Wall clock time and date at job start Mon Mar 30 2020 05:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.34777 * 119.99828 * 274.72131 * 5 3 2 7 7 O 1.21443 * 120.00325 * 0.28121 * 6 5 3 8 8 C 1.48827 * 120.00046 * 180.27751 * 6 5 3 9 9 O 1.21503 * 120.00063 * 0.02562 * 8 6 5 10 10 N 1.34777 * 120.00046 * 179.97438 * 8 6 5 11 11 C 1.36121 * 119.99923 * 179.97438 * 10 8 6 12 12 H 1.08002 * 120.00360 * 0.02562 * 11 10 8 13 13 C 1.39592 * 120.00132 * 180.02562 * 11 10 8 14 14 N 1.31008 * 120.00327 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99583 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00288 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00022 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99853 * 15 13 11 19 19 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 20 20 N 1.30499 * 125.64529 * 305.02612 * 19 3 2 21 21 C 1.34131 * 109.25316 * 180.02562 * 20 19 3 22 22 C 1.34665 * 108.02016 * 359.97438 * 21 20 19 23 23 N 1.35041 * 125.65156 * 124.71554 * 19 3 2 24 24 H 0.96998 * 126.39419 * 0.02562 * 23 19 3 25 25 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 26 26 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 28 28 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 29 29 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 30 30 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 31 31 H 0.97000 * 120.00317 * 0.02562 * 10 8 6 32 32 H 0.97005 * 120.00180 * 179.97438 * 14 13 11 33 33 H 1.08008 * 125.99266 * 180.02562 * 21 20 19 34 34 H 1.08005 * 126.59047 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4374 2.6692 1.3650 7 8 -0.3383 2.6371 0.4311 8 6 0.0459 3.3400 2.6346 9 8 0.8221 3.3726 3.5689 10 7 -1.1691 3.9123 2.7476 11 6 -1.5272 4.5253 3.9090 12 1 -0.8377 4.5536 4.7397 13 6 -2.7858 5.1176 4.0263 14 7 -3.1308 5.7072 5.1442 15 14 -3.9787 5.0682 2.5896 16 1 -4.8189 3.8474 2.6855 17 1 -4.8482 6.2716 2.6266 18 1 -3.2176 5.0465 1.3147 19 6 3.5420 1.4443 -0.1238 20 7 4.3706 0.8115 0.6611 21 6 5.6278 1.0397 0.2532 22 6 5.5763 1.8439 -0.8257 23 7 4.2531 2.0961 -1.0689 24 1 3.8934 2.6433 -1.7845 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.2720 2.1232 1.9978 31 1 -1.7886 3.8867 2.0016 32 1 -4.0053 6.1191 5.2255 33 1 6.5244 0.6466 0.7095 34 1 6.4172 2.2153 -1.3926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139659509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:47 Heat of formation + Delta-G solvation = -10.863147 kcal Electronic energy + Delta-G solvation = -19944.690105 eV Core-core repulsion = 16685.860588 eV Total energy + Delta-G solvation = -3258.829517 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -42.27198 -39.83884 -37.64072 -35.70467 -34.27532 -32.67925 -32.14129 -31.77474 -29.98148 -26.69250 -25.62202 -22.83622 -21.84310 -21.80998 -20.16634 -19.59927 -19.10990 -18.22257 -16.69748 -16.36167 -15.57715 -15.32482 -14.91070 -14.59181 -14.31152 -14.11504 -13.68920 -13.58369 -13.46815 -12.91360 -12.64833 -12.41712 -12.26605 -11.63968 -11.37077 -11.28299 -10.82967 -10.70679 -10.54220 -10.21847 -10.19671 -10.10215 -9.77487 -8.92891 -8.72378 -8.42203 -8.38366 -6.58988 -4.00445 1.76286 2.25409 2.75524 2.92311 3.03576 3.06377 3.09548 3.46982 3.94895 4.08019 4.20224 4.67360 4.74662 4.97291 5.03718 5.12787 5.19368 5.36436 5.47058 5.60120 5.71844 5.85497 5.93625 6.05828 6.26478 6.53923 6.54845 6.62305 7.09291 7.25691 7.63462 7.89396 7.91651 8.22254 8.48533 8.73751 9.18812 9.61234 10.51111 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031606 B = 0.004594 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.708727 B = 6093.256001 C = 6496.236839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.235 3.765 4 H 0.099 0.901 5 N -0.700 5.700 6 C 0.517 3.483 7 O -0.546 6.546 8 C 0.404 3.596 9 O -0.575 6.575 10 N -0.527 5.527 11 C -0.308 4.308 12 H 0.128 0.872 13 C 0.053 3.947 14 N -0.849 5.849 15 Si 0.876 3.124 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.260 1.260 19 C 0.198 3.802 20 N -0.471 5.471 21 C -0.027 4.027 22 C -0.053 4.053 23 N -0.560 5.560 24 H 0.420 0.580 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.418 0.582 31 H 0.384 0.616 32 H 0.281 0.719 33 H 0.172 0.828 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.225 -7.625 -14.990 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.128 3.872 4 H 0.117 0.883 5 N -0.355 5.355 6 C 0.302 3.698 7 O -0.423 6.423 8 C 0.189 3.811 9 O -0.461 6.461 10 N -0.164 5.164 11 C -0.438 4.438 12 H 0.145 0.855 13 C -0.156 4.156 14 N -0.486 5.486 15 Si 0.701 3.299 16 H -0.189 1.189 17 H -0.196 1.196 18 H -0.185 1.185 19 C -0.066 4.066 20 N -0.191 5.191 21 C -0.176 4.176 22 C -0.187 4.187 23 N -0.163 5.163 24 H 0.258 0.742 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.255 0.745 31 H 0.218 0.782 32 H 0.092 0.908 33 H 0.189 0.811 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.823 -8.012 -14.215 19.581 hybrid contribution -0.405 0.901 -1.720 1.984 sum 10.419 -7.111 -15.935 20.324 Atomic orbital electron populations 1.21842 0.94189 1.00971 1.03479 1.21860 0.97015 0.94054 1.03144 1.19118 0.83419 0.95509 0.89165 0.88332 1.45693 1.17310 1.56597 1.15918 1.20618 0.81529 0.78349 0.89285 1.90684 1.51074 1.59658 1.40907 1.18786 0.84917 0.89001 0.88434 1.90647 1.51315 1.64104 1.40041 1.41809 1.13395 1.46231 1.14943 1.19570 1.01371 1.30754 0.92099 0.85493 1.25230 0.97199 0.95843 0.97288 1.69440 1.21706 1.32507 1.24968 0.86676 0.81645 0.79421 0.82182 1.18862 1.19580 1.18469 1.23224 0.95629 0.97526 0.90244 1.70243 1.00635 1.22080 1.26098 1.22423 0.95668 1.02292 0.97207 1.22812 0.86016 1.06562 1.03306 1.43291 1.07037 1.39787 1.26208 0.74195 0.92154 0.93147 0.91862 0.91370 0.90309 0.74524 0.78175 0.90777 0.81091 0.80463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.52 37.16 0.32 -1.72 16 2 C -0.12 -1.54 5.56 -26.73 -0.15 -1.69 16 3 C 0.23 3.15 2.80 -69.08 -0.19 2.96 16 4 H 0.10 1.25 7.57 -51.93 -0.39 0.86 16 5 N -0.70 -11.71 5.01 -55.56 -0.28 -11.99 16 6 C 0.52 10.30 6.44 -11.88 -0.08 10.23 16 7 O -0.55 -10.95 13.62 5.42 0.07 -10.87 16 8 C 0.40 9.74 7.82 -11.88 -0.09 9.65 16 9 O -0.58 -15.40 16.03 5.36 0.09 -15.32 16 10 N -0.53 -13.16 5.06 -11.59 -0.06 -13.22 16 11 C -0.31 -8.59 10.16 -15.14 -0.15 -8.74 16 12 H 0.13 3.96 7.37 -52.49 -0.39 3.57 16 13 C 0.05 1.40 5.51 -17.40 -0.10 1.30 16 14 N -0.85 -23.58 13.94 55.53 0.77 -22.80 16 15 Si 0.88 19.16 27.74 -169.99 -4.72 14.44 16 16 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.26 -5.47 6.53 56.52 0.37 -5.10 16 19 C 0.20 2.49 6.87 -155.42 -1.07 1.42 16 20 N -0.47 -6.52 11.21 -10.81 -0.12 -6.64 16 21 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 22 C -0.05 -0.46 12.04 -16.56 -0.20 -0.66 16 23 N -0.56 -5.27 6.15 -10.23 -0.06 -5.34 16 24 H 0.42 2.73 8.96 -40.82 -0.37 2.37 16 25 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.05 5.66 -51.93 -0.29 0.76 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.42 7.32 8.05 -40.82 -0.33 6.99 16 31 H 0.38 8.92 5.22 -40.82 -0.21 8.71 16 32 H 0.28 7.13 8.30 -40.82 -0.34 6.79 16 33 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 296.61 15.07 4.47 4.47 Total: -1.00 -32.23 296.61 -5.43 -37.66 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -3.67 Total: 17.37 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -1.92 Total: 12.24 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.25 Total: -59.98 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: 0.16 Total: -26.19 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.72 Total: 14.44 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.23 -5.43 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139659509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.797 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds