Wall clock time and date at job start Mon Mar 30 2020 05:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.34777 * 119.99828 * 274.72131 * 5 3 2 7 7 O 1.21443 * 120.00325 * 0.28121 * 6 5 3 8 8 C 1.48827 * 120.00046 * 180.27751 * 6 5 3 9 9 O 1.21503 * 120.00063 * 0.02562 * 8 6 5 10 10 N 1.34777 * 120.00046 * 179.97438 * 8 6 5 11 11 C 1.36121 * 119.99923 * 179.97438 * 10 8 6 12 12 H 1.08002 * 120.00360 * 0.02562 * 11 10 8 13 13 C 1.39592 * 120.00132 * 180.02562 * 11 10 8 14 14 N 1.31008 * 120.00327 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99583 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00288 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00022 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99853 * 15 13 11 19 19 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 20 20 N 1.30499 * 125.64529 * 305.02612 * 19 3 2 21 21 C 1.34131 * 109.25316 * 180.02562 * 20 19 3 22 22 C 1.34665 * 108.02016 * 359.97438 * 21 20 19 23 23 N 1.35041 * 125.65156 * 124.71554 * 19 3 2 24 24 H 0.96998 * 126.39419 * 0.02562 * 23 19 3 25 25 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 26 26 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 28 28 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 29 29 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 30 30 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 31 31 H 0.97000 * 120.00317 * 0.02562 * 10 8 6 32 32 H 0.97005 * 120.00180 * 179.97438 * 14 13 11 33 33 H 1.08008 * 125.99266 * 180.02562 * 21 20 19 34 34 H 1.08005 * 126.59047 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4374 2.6692 1.3650 7 8 -0.3383 2.6371 0.4311 8 6 0.0459 3.3400 2.6346 9 8 0.8221 3.3726 3.5689 10 7 -1.1691 3.9123 2.7476 11 6 -1.5272 4.5253 3.9090 12 1 -0.8377 4.5536 4.7397 13 6 -2.7858 5.1176 4.0263 14 7 -3.1308 5.7072 5.1442 15 14 -3.9787 5.0682 2.5896 16 1 -4.8189 3.8474 2.6855 17 1 -4.8482 6.2716 2.6266 18 1 -3.2176 5.0465 1.3147 19 6 3.5420 1.4443 -0.1238 20 7 4.3706 0.8115 0.6611 21 6 5.6278 1.0397 0.2532 22 6 5.5763 1.8439 -0.8257 23 7 4.2531 2.0961 -1.0689 24 1 3.8934 2.6433 -1.7845 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.2720 2.1232 1.9978 31 1 -1.7886 3.8867 2.0016 32 1 -4.0053 6.1191 5.2255 33 1 6.5244 0.6466 0.7095 34 1 6.4172 2.2153 -1.3926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139659509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:46 Heat of formation + Delta-G solvation = -36.903910 kcal Electronic energy + Delta-G solvation = -19945.819317 eV Core-core repulsion = 16685.860588 eV Total energy + Delta-G solvation = -3259.958729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.10075 -41.49088 -39.46093 -37.10384 -36.23757 -34.00814 -33.50343 -33.27099 -30.91092 -28.24738 -27.11857 -24.49743 -22.88748 -22.61075 -21.44590 -21.06748 -20.93963 -19.42751 -18.25271 -17.89484 -17.10952 -16.92048 -16.38594 -15.80928 -15.46223 -15.24669 -15.11430 -14.90376 -14.75935 -14.46201 -14.34438 -14.05558 -13.46568 -13.08059 -12.74982 -12.55550 -12.51565 -12.35133 -11.99624 -11.81960 -11.70871 -11.06765 -11.05688 -10.47701 -10.38180 -10.26296 -9.44316 -8.62044 -6.16545 0.50899 0.91243 1.29370 1.34495 1.39949 1.67130 2.10884 2.12512 2.23179 2.32318 3.04337 3.08463 3.29769 3.73729 3.83054 4.00070 4.22232 4.40787 4.49005 4.56006 4.69225 4.87383 4.98173 5.09235 5.14135 5.26434 5.30663 5.45775 5.73788 5.78524 6.05078 6.34089 6.42875 6.57908 6.86779 7.07893 7.14660 7.63057 8.52625 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031606 B = 0.004594 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.708727 B = 6093.256001 C = 6496.236839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.235 3.765 4 H 0.111 0.889 5 N -0.687 5.687 6 C 0.531 3.469 7 O -0.542 6.542 8 C 0.404 3.596 9 O -0.607 6.607 10 N -0.529 5.529 11 C -0.341 4.341 12 H 0.075 0.925 13 C 0.011 3.989 14 N -0.893 5.893 15 Si 0.950 3.050 16 H -0.252 1.252 17 H -0.258 1.258 18 H -0.244 1.244 19 C 0.174 3.826 20 N -0.504 5.504 21 C -0.060 4.060 22 C -0.024 4.024 23 N -0.549 5.549 24 H 0.435 0.565 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.413 0.587 31 H 0.394 0.606 32 H 0.290 0.710 33 H 0.187 0.813 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.685 -8.159 -18.467 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.130 3.870 4 H 0.129 0.871 5 N -0.340 5.340 6 C 0.314 3.686 7 O -0.420 6.420 8 C 0.189 3.811 9 O -0.494 6.494 10 N -0.167 5.167 11 C -0.470 4.470 12 H 0.093 0.907 13 C -0.194 4.194 14 N -0.530 5.530 15 Si 0.769 3.231 16 H -0.176 1.176 17 H -0.182 1.182 18 H -0.168 1.168 19 C -0.090 4.090 20 N -0.225 5.225 21 C -0.208 4.208 22 C -0.160 4.160 23 N -0.153 5.153 24 H 0.276 0.724 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.250 0.750 31 H 0.231 0.769 32 H 0.101 0.899 33 H 0.204 0.796 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 11.288 -8.549 -17.713 22.677 hybrid contribution -0.312 1.000 -0.620 1.217 sum 10.975 -7.549 -18.333 22.662 Atomic orbital electron populations 1.21801 0.94908 1.01610 1.01885 1.21803 0.96159 0.93631 1.03759 1.19293 0.84674 0.95653 0.87374 0.87095 1.45705 1.15732 1.55324 1.17211 1.19662 0.82734 0.78787 0.87436 1.90686 1.51282 1.59893 1.40119 1.19700 0.84151 0.87638 0.89634 1.90623 1.52201 1.64728 1.41858 1.41652 1.14043 1.46628 1.14416 1.19165 1.01805 1.33754 0.92272 0.90709 1.26111 0.98458 0.94357 1.00490 1.69552 1.22855 1.33261 1.27357 0.85569 0.78899 0.80290 0.78330 1.17560 1.18154 1.16833 1.22834 0.94995 0.99378 0.91816 1.70155 1.02149 1.23007 1.27221 1.22886 0.95345 1.03897 0.98710 1.23470 0.86465 1.04062 1.01976 1.43282 1.07158 1.39069 1.25815 0.72449 0.91928 0.91548 0.95036 0.88847 0.91529 0.75036 0.76934 0.89911 0.79559 0.76258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.52 71.98 0.61 -3.14 16 2 C -0.11 -2.70 5.56 30.60 0.17 -2.53 16 3 C 0.24 5.90 2.80 44.24 0.12 6.03 16 4 H 0.11 2.52 7.57 -2.39 -0.02 2.51 16 5 N -0.69 -22.55 5.01 -448.03 -2.24 -24.79 16 6 C 0.53 20.89 6.44 87.08 0.56 21.45 16 7 O -0.54 -20.88 13.62 -3.54 -0.05 -20.93 16 8 C 0.40 19.89 7.82 87.08 0.68 20.57 16 9 O -0.61 -33.85 16.03 -3.73 -0.06 -33.91 16 10 N -0.53 -26.89 5.06 -308.87 -1.56 -28.45 16 11 C -0.34 -19.82 10.16 84.35 0.86 -18.96 16 12 H 0.07 5.03 7.37 -2.91 -0.02 5.01 16 13 C 0.01 0.58 5.51 85.14 0.47 1.05 16 14 N -0.89 -51.00 13.94 21.77 0.30 -50.69 16 15 Si 0.95 38.91 27.74 68.60 1.90 40.81 16 16 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.24 -9.33 6.53 99.48 0.65 -8.68 16 19 C 0.17 4.01 6.87 138.13 0.95 4.96 16 20 N -0.50 -13.31 11.21 -188.13 -2.11 -15.42 16 21 C -0.06 -1.20 11.87 83.52 0.99 -0.20 16 22 C -0.02 -0.33 12.04 83.09 1.00 0.67 16 23 N -0.55 -8.59 6.15 -186.27 -1.15 -9.74 16 24 H 0.43 4.09 8.96 -92.71 -0.83 3.26 16 25 H 0.06 1.58 7.85 -2.39 -0.02 1.56 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.03 1.01 5.66 -2.39 -0.01 0.99 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.41 14.57 8.05 -92.71 -0.75 13.82 16 31 H 0.39 18.05 5.22 -92.71 -0.48 17.57 16 32 H 0.29 14.92 8.30 -92.70 -0.77 14.15 16 33 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.22 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -73.21 296.61 0.51 -72.70 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: -0.94 Total: 40.52 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 6.42 Total: 29.90 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -6.76 Total: -129.10 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -0.11 Total: -54.84 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 1.90 Total: 40.81 kcal Total: -73.21 0.51 -72.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139659509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.798 kcal (2) G-P(sol) polarization free energy of solvation -73.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds