Wall clock time and date at job start Mon Mar 30 2020 05:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.46777 * 2 1 4 4 C 1.38270 * 119.94028 * 265.02426 * 3 2 1 5 5 C 1.38095 * 120.09699 * 180.02562 * 4 3 2 6 6 C 1.38947 * 119.97612 * 359.97438 * 5 4 3 7 7 N 1.39670 * 120.05831 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00053 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47394 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99522 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99758 * 180.02562 * 9 8 7 12 12 C 1.37099 * 119.99478 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00044 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99671 * 179.97438 * 12 11 9 15 15 N 1.31413 * 119.99813 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99980 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47102 * 90.00293 * 16 14 12 18 18 H 1.48502 * 109.46879 * 209.99886 * 16 14 12 19 19 H 1.48500 * 109.47112 * 329.99785 * 16 14 12 20 20 C 1.38846 * 119.87742 * 359.72463 * 6 5 4 21 21 C 1.38344 * 119.90021 * 0.52912 * 20 6 5 22 22 F 1.35104 * 119.98639 * 179.76651 * 21 20 6 23 23 H 1.09004 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47651 * 299.99742 * 1 2 3 25 25 H 1.09001 * 109.47276 * 60.00269 * 1 2 3 26 26 H 1.08995 * 109.47199 * 240.00438 * 2 1 3 27 27 H 1.09001 * 109.47276 * 119.99731 * 2 1 3 28 28 H 1.07999 * 119.95186 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.01154 * 180.02562 * 5 4 3 30 30 H 0.96997 * 120.00460 * 359.97438 * 7 6 5 31 31 H 1.09002 * 109.46920 * 300.00207 * 8 7 6 32 32 H 1.09007 * 109.47197 * 59.99737 * 8 7 6 33 33 H 0.96994 * 120.00017 * 0.02562 * 11 9 8 34 34 H 0.97002 * 119.99926 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.04565 * 180.27290 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3602 2.0369 -1.1937 5 6 2.8212 3.3386 -1.1974 6 6 2.9554 4.0310 -0.0002 7 7 3.4211 5.3478 -0.0020 8 6 3.5615 6.0768 1.2609 9 6 4.0786 7.4652 0.9848 10 8 4.3068 7.8117 -0.1549 11 7 4.2874 8.3216 2.0043 12 6 4.7583 9.5845 1.7531 13 1 4.9615 9.8930 0.7383 14 6 4.9730 10.4676 2.8041 15 7 5.4239 11.6783 2.5632 16 14 4.6208 9.9340 4.5593 17 1 5.8423 9.3274 5.1468 18 1 4.2185 11.1152 5.3644 19 1 3.5217 8.9355 4.5620 20 6 2.6199 3.4135 1.1973 21 6 2.1635 2.1075 1.1956 22 9 1.8409 1.5034 2.3602 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2556 1.4992 -2.1245 29 1 3.0766 3.8186 -2.1306 30 1 3.6514 5.7796 -0.8394 31 1 2.5911 6.1413 1.7531 32 1 4.2629 5.5503 1.9083 33 1 4.1052 8.0443 2.9157 34 1 5.5742 12.2947 3.2970 35 1 2.7189 3.9506 2.1290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152443334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:11 Heat of formation + Delta-G solvation = -63.764880 kcal Electronic energy + Delta-G solvation = -19097.567426 eV Core-core repulsion = 15816.523956 eV Total energy + Delta-G solvation = -3281.043470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.86660 -39.56015 -38.51313 -35.83106 -34.19563 -33.00975 -31.84985 -30.54540 -29.12219 -26.83958 -24.48831 -23.34664 -22.55161 -20.91361 -19.63656 -18.69222 -17.90383 -16.59800 -16.02822 -15.82285 -15.55126 -15.21588 -14.95966 -14.69043 -14.52947 -14.03464 -13.79928 -13.35045 -13.25075 -12.99133 -12.79788 -12.50804 -12.38728 -12.15261 -11.81831 -11.54707 -11.28428 -11.05819 -10.93225 -10.69621 -10.10861 -9.86221 -9.73800 -8.82848 -8.80633 -8.35796 -7.34959 -6.45141 -3.98098 1.25298 1.45594 2.94165 2.98948 3.07935 3.40371 3.49294 3.69300 3.98745 4.31215 4.50646 4.69764 4.73626 4.98713 5.08545 5.19657 5.23943 5.36625 5.40943 5.45726 5.62099 5.66879 5.69048 5.75882 5.82830 6.01711 6.07346 6.13302 6.26682 6.45986 6.81914 7.27557 7.43600 7.84812 7.98801 8.40156 8.77143 9.24606 9.58027 10.67071 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035744 B = 0.003627 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.163809 B = 7718.236118 C = 8391.244831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.040 4.040 5 C -0.205 4.205 6 C 0.252 3.748 7 N -0.718 5.718 8 C 0.107 3.893 9 C 0.438 3.562 10 O -0.576 6.576 11 N -0.576 5.576 12 C -0.311 4.311 13 H 0.121 0.879 14 C 0.045 3.955 15 N -0.873 5.873 16 Si 0.880 3.120 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.268 1.268 20 C -0.241 4.241 21 C 0.148 3.852 22 F -0.141 7.141 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.415 0.585 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.374 0.626 34 H 0.276 0.724 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.590 -20.614 -1.592 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.192 4.192 4 C -0.059 4.059 5 C -0.228 4.228 6 C 0.145 3.855 7 N -0.348 5.348 8 C -0.022 4.022 9 C 0.224 3.776 10 O -0.460 6.460 11 N -0.214 5.214 12 C -0.440 4.440 13 H 0.139 0.861 14 C -0.159 4.159 15 N -0.512 5.512 16 Si 0.706 3.294 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.193 1.193 20 C -0.265 4.265 21 C 0.128 3.872 22 F -0.120 7.120 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.254 0.746 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.207 0.793 34 H 0.087 0.913 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.341 -20.015 -2.035 21.415 hybrid contribution -0.152 0.005 1.484 1.492 sum -7.493 -20.010 -0.551 21.374 Atomic orbital electron populations 1.21757 0.95155 1.01356 1.02156 1.20292 0.95909 0.92240 1.02559 1.19553 1.09715 0.97922 0.91969 1.20556 0.95096 0.93604 0.96670 1.20641 1.09642 0.95862 0.96671 1.17529 0.90463 0.84526 0.93011 1.44535 1.70528 1.10184 1.09569 1.21028 1.01393 0.92564 0.87183 1.19580 0.85509 0.86396 0.86111 1.90548 1.56625 1.77625 1.21245 1.42126 1.58661 1.13487 1.07138 1.19442 1.40453 0.86326 0.97751 0.86099 1.25073 0.96958 0.95264 0.98605 1.69618 1.43258 1.05368 1.32974 0.86662 0.79078 0.79142 0.84525 1.19372 1.19921 1.19316 1.20504 1.12448 0.95155 0.98430 1.17172 0.98428 0.90798 0.80772 1.91455 1.90279 1.83324 1.46920 0.92687 0.92710 0.92574 0.91120 0.91405 0.85423 0.85487 0.74550 0.90349 0.90340 0.79315 0.91330 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.15 0.37 -0.88 16 2 C -0.07 -0.67 5.83 -27.88 -0.16 -0.83 16 3 C -0.19 -2.14 5.14 -104.51 -0.54 -2.68 16 4 C -0.04 -0.43 9.67 -39.62 -0.38 -0.81 16 5 C -0.21 -2.46 9.89 -39.37 -0.39 -2.85 16 6 C 0.25 3.46 6.65 -83.80 -0.56 2.90 16 7 N -0.72 -11.02 5.70 -59.81 -0.34 -11.36 16 8 C 0.11 1.70 5.39 -5.19 -0.03 1.68 16 9 C 0.44 9.44 7.85 -10.98 -0.09 9.35 16 10 O -0.58 -14.60 15.24 5.55 0.08 -14.51 16 11 N -0.58 -13.13 5.09 -10.96 -0.06 -13.18 16 12 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 13 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 14 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 15 N -0.87 -24.78 13.96 55.50 0.77 -24.01 16 16 Si 0.88 18.66 27.74 -169.99 -4.71 13.95 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 19 H -0.27 -5.14 6.52 56.52 0.37 -4.78 16 20 C -0.24 -3.23 9.29 -39.32 -0.37 -3.60 16 21 C 0.15 1.92 7.24 -39.45 -0.29 1.63 16 22 F -0.14 -1.86 16.56 2.25 0.04 -1.82 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 27 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 28 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.42 6.75 7.45 -40.82 -0.30 6.45 16 31 H 0.08 1.11 7.94 -51.93 -0.41 0.70 16 32 H 0.08 1.10 7.96 -51.93 -0.41 0.69 16 33 H 0.37 7.39 5.76 -40.82 -0.24 7.16 16 34 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.13 1.67 6.73 -52.49 -0.35 1.32 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -30.31 305.45 -6.50 -36.81 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -4.21 Total: 13.15 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.68 Total: -3.63 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.38 Total: -48.55 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.08 Total: -14.51 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.71 Total: 13.95 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.31 -6.50 -36.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152443334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.953 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds