Wall clock time and date at job start Mon Mar 30 2020 05:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.46777 * 2 1 4 4 C 1.38270 * 119.94028 * 265.02426 * 3 2 1 5 5 C 1.38095 * 120.09699 * 180.02562 * 4 3 2 6 6 C 1.38947 * 119.97612 * 359.97438 * 5 4 3 7 7 N 1.39670 * 120.05831 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00053 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47394 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99522 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99758 * 180.02562 * 9 8 7 12 12 C 1.37099 * 119.99478 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00044 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99671 * 179.97438 * 12 11 9 15 15 N 1.31413 * 119.99813 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99980 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47102 * 90.00293 * 16 14 12 18 18 H 1.48502 * 109.46879 * 209.99886 * 16 14 12 19 19 H 1.48500 * 109.47112 * 329.99785 * 16 14 12 20 20 C 1.38846 * 119.87742 * 359.72463 * 6 5 4 21 21 C 1.38344 * 119.90021 * 0.52912 * 20 6 5 22 22 F 1.35104 * 119.98639 * 179.76651 * 21 20 6 23 23 H 1.09004 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47651 * 299.99742 * 1 2 3 25 25 H 1.09001 * 109.47276 * 60.00269 * 1 2 3 26 26 H 1.08995 * 109.47199 * 240.00438 * 2 1 3 27 27 H 1.09001 * 109.47276 * 119.99731 * 2 1 3 28 28 H 1.07999 * 119.95186 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.01154 * 180.02562 * 5 4 3 30 30 H 0.96997 * 120.00460 * 359.97438 * 7 6 5 31 31 H 1.09002 * 109.46920 * 300.00207 * 8 7 6 32 32 H 1.09007 * 109.47197 * 59.99737 * 8 7 6 33 33 H 0.96994 * 120.00017 * 0.02562 * 11 9 8 34 34 H 0.97002 * 119.99926 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.04565 * 180.27290 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3602 2.0369 -1.1937 5 6 2.8212 3.3386 -1.1974 6 6 2.9554 4.0310 -0.0002 7 7 3.4211 5.3478 -0.0020 8 6 3.5615 6.0768 1.2609 9 6 4.0786 7.4652 0.9848 10 8 4.3068 7.8117 -0.1549 11 7 4.2874 8.3216 2.0043 12 6 4.7583 9.5845 1.7531 13 1 4.9615 9.8930 0.7383 14 6 4.9730 10.4676 2.8041 15 7 5.4239 11.6783 2.5632 16 14 4.6208 9.9340 4.5593 17 1 5.8423 9.3274 5.1468 18 1 4.2185 11.1152 5.3644 19 1 3.5217 8.9355 4.5620 20 6 2.6199 3.4135 1.1973 21 6 2.1635 2.1075 1.1956 22 9 1.8409 1.5034 2.3602 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2556 1.4992 -2.1245 29 1 3.0766 3.8186 -2.1306 30 1 3.6514 5.7796 -0.8394 31 1 2.5911 6.1413 1.7531 32 1 4.2629 5.5503 1.9083 33 1 4.1052 8.0443 2.9157 34 1 5.5742 12.2947 3.2970 35 1 2.7189 3.9506 2.1290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152443334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:10 Heat of formation + Delta-G solvation = -84.032142 kcal Electronic energy + Delta-G solvation = -19098.446280 eV Core-core repulsion = 15816.523956 eV Total energy + Delta-G solvation = -3281.922324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.83941 -40.79390 -39.99666 -36.94625 -36.04999 -34.00582 -33.79417 -31.47964 -30.25140 -28.12329 -26.14224 -24.21035 -23.58877 -21.81125 -21.42099 -20.46140 -19.11413 -17.69975 -17.50928 -16.82951 -16.78445 -16.58921 -16.36947 -15.96671 -15.78301 -15.04817 -14.79030 -14.67166 -14.50011 -14.39521 -14.04436 -13.96051 -13.58871 -13.22730 -13.02110 -12.74632 -12.47081 -12.38097 -12.01595 -11.79496 -11.70598 -11.59887 -10.83878 -10.66775 -10.34370 -9.74606 -8.47356 -8.38046 -6.09993 0.31328 0.52333 1.29189 1.32933 1.43022 1.78601 2.17789 2.20831 2.75709 2.89228 3.08856 3.42344 3.84956 3.92923 3.96587 4.17757 4.31337 4.33517 4.41564 4.52757 4.59132 4.64388 4.83869 5.01312 5.11765 5.13709 5.22870 5.36666 5.41961 5.45455 5.60022 5.83783 5.89905 6.25813 6.49401 6.68941 6.77101 7.27337 7.78032 8.69439 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035744 B = 0.003627 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.163809 B = 7718.236118 C = 8391.244831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.037 4.037 5 C -0.207 4.207 6 C 0.234 3.766 7 N -0.731 5.731 8 C 0.121 3.879 9 C 0.442 3.558 10 O -0.619 6.619 11 N -0.578 5.578 12 C -0.334 4.334 13 H 0.059 0.941 14 C -0.010 4.010 15 N -0.928 5.928 16 Si 0.962 3.038 17 H -0.256 1.256 18 H -0.274 1.274 19 H -0.230 1.230 20 C -0.248 4.248 21 C 0.130 3.870 22 F -0.146 7.146 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.159 0.841 29 H 0.137 0.863 30 H 0.408 0.592 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.393 0.607 34 H 0.281 0.719 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.830 -23.667 -0.256 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.187 4.187 4 C -0.055 4.055 5 C -0.230 4.230 6 C 0.129 3.871 7 N -0.361 5.361 8 C -0.007 4.007 9 C 0.230 3.770 10 O -0.505 6.505 11 N -0.218 5.218 12 C -0.463 4.463 13 H 0.077 0.923 14 C -0.210 4.210 15 N -0.567 5.567 16 Si 0.782 3.218 17 H -0.180 1.180 18 H -0.199 1.199 19 H -0.153 1.153 20 C -0.272 4.272 21 C 0.110 3.890 22 F -0.124 7.124 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.177 0.823 29 H 0.155 0.845 30 H 0.246 0.754 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.229 0.771 34 H 0.091 0.909 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.602 -23.123 -0.698 24.681 hybrid contribution 0.225 0.871 0.888 1.265 sum -8.377 -22.252 0.191 23.777 Atomic orbital electron populations 1.21741 0.94597 1.02310 1.01604 1.20380 0.96321 0.90917 1.03488 1.19917 1.08297 0.98888 0.91616 1.20899 0.93824 0.93077 0.97707 1.20904 1.09060 0.96424 0.96609 1.17659 0.91586 0.83943 0.93876 1.44486 1.71928 1.10920 1.08795 1.20969 1.02927 0.88634 0.88158 1.20672 0.83142 0.88106 0.85072 1.90532 1.57687 1.79040 1.23247 1.41923 1.59268 1.12145 1.08493 1.19017 1.42626 0.88963 0.95669 0.92254 1.26121 0.95810 0.94705 1.04319 1.69790 1.44665 1.07153 1.35137 0.85405 0.80472 0.79601 0.76362 1.18013 1.19910 1.15281 1.20608 1.12528 0.95518 0.98574 1.17379 0.99338 0.91026 0.81252 1.91441 1.90412 1.83344 1.47235 0.91051 0.94140 0.92232 0.89006 0.91708 0.82336 0.84500 0.75412 0.87789 0.87691 0.77108 0.90902 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.07 -1.13 5.83 29.85 0.17 -0.96 16 3 C -0.18 -3.70 5.14 -19.79 -0.10 -3.80 16 4 C -0.04 -0.67 9.67 22.24 0.22 -0.45 16 5 C -0.21 -4.54 9.89 22.41 0.22 -4.32 16 6 C 0.23 6.04 6.65 38.21 0.25 6.30 16 7 N -0.73 -21.57 5.70 -343.14 -1.96 -23.53 16 8 C 0.12 3.62 5.39 85.63 0.46 4.08 16 9 C 0.44 19.03 7.85 87.66 0.69 19.72 16 10 O -0.62 -32.45 15.24 -3.05 -0.05 -32.49 16 11 N -0.58 -26.14 5.09 -306.98 -1.56 -27.71 16 12 C -0.33 -18.95 10.16 84.04 0.85 -18.10 16 13 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 14 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 15 N -0.93 -54.61 13.96 21.66 0.30 -54.30 16 16 Si 0.96 37.45 27.74 68.60 1.90 39.35 16 17 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 18 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 19 H -0.23 -7.46 6.52 99.48 0.65 -6.81 16 20 C -0.25 -6.17 9.29 22.44 0.21 -5.96 16 21 C 0.13 3.11 7.24 22.36 0.16 3.27 16 22 F -0.15 -3.60 16.56 44.97 0.74 -2.85 16 23 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.09 1.04 8.05 -2.39 -0.02 1.02 16 27 H 0.06 1.05 7.79 -2.39 -0.02 1.03 16 28 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.41 13.25 7.45 -92.71 -0.69 12.56 16 31 H 0.10 2.62 7.94 -2.39 -0.02 2.60 16 32 H 0.11 2.63 7.96 -2.38 -0.02 2.61 16 33 H 0.39 14.55 5.76 -92.71 -0.53 14.02 16 34 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.14 3.15 6.73 -2.91 -0.02 3.13 16 Total: -1.00 -70.22 305.45 3.55 -66.67 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.15 Total: 36.51 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 4.32 Total: -1.65 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -3.22 Total: -105.54 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.05 Total: -32.49 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.74 Total: -2.85 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 1.90 Total: 39.35 kcal Total: -70.22 3.55 -66.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152443334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.360 kcal (2) G-P(sol) polarization free energy of solvation -70.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds