Wall clock time and date at job start Mon Mar 30 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00521 * 2 1 4 4 C 1.38817 * 120.01466 * 0.02562 * 3 2 1 5 5 C 1.38174 * 120.09177 * 180.02562 * 4 3 2 6 6 C 1.38155 * 120.12860 * 0.02562 * 5 4 3 7 7 N 1.48009 * 119.98398 * 179.97438 * 6 5 4 8 8 O 1.21795 * 119.99608 * 0.02562 * 7 6 5 9 9 O 1.21799 * 119.99943 * 180.02562 * 7 6 5 10 10 C 1.38935 * 120.03622 * 359.97438 * 6 5 4 11 11 N 1.39671 * 120.04884 * 179.97438 * 10 6 5 12 12 C 1.46894 * 111.00317 * 243.95304 * 11 10 6 13 13 C 1.46902 * 110.99597 * 119.99816 * 11 10 6 14 14 C 1.50706 * 109.46577 * 190.00228 * 13 11 10 15 15 H 1.07995 * 120.00167 * 359.72326 * 14 13 11 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 13 11 17 17 N 1.31514 * 119.99350 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99430 * 18 16 14 20 20 H 1.48494 * 109.47031 * 209.99977 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99678 * 18 16 14 22 22 C 1.38570 * 120.01741 * 180.27645 * 3 2 1 23 23 H 1.09003 * 109.46899 * 299.99811 * 1 2 3 24 24 H 1.08993 * 109.46933 * 59.99778 * 1 2 3 25 25 H 1.09003 * 109.47501 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.95492 * 359.97438 * 4 3 2 27 27 H 1.07994 * 119.93771 * 179.97438 * 5 4 3 28 28 H 1.09007 * 109.47149 * 296.04986 * 12 11 10 29 29 H 1.09002 * 109.47016 * 56.04409 * 12 11 10 30 30 H 1.08993 * 109.47669 * 176.04422 * 12 11 10 31 31 H 1.09000 * 109.47263 * 70.00428 * 13 11 10 32 32 H 1.09001 * 109.47582 * 309.99708 * 13 11 10 33 33 H 0.97005 * 119.99656 * 180.02562 * 17 16 14 34 34 H 1.07996 * 120.06988 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9161 3.6072 0.0000 6 6 3.2955 3.6843 -0.0016 7 7 3.9625 5.0056 -0.0027 8 8 3.2952 6.0245 -0.0018 9 8 5.1786 5.0739 -0.0046 10 6 4.0570 2.5222 -0.0021 11 7 5.4516 2.5999 -0.0043 12 6 6.0089 2.0273 -1.2369 13 6 6.0171 1.9452 1.1829 14 6 7.4885 2.2575 1.2758 15 1 7.9575 2.8764 0.5253 16 6 8.2370 1.7480 2.3156 17 7 9.5211 2.0201 2.3963 18 14 7.4276 0.6700 3.6087 19 1 7.5030 -0.7516 3.1859 20 1 8.1317 0.8389 4.9052 21 1 6.0046 1.0658 3.7629 22 6 3.4298 1.2836 -0.0058 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2119 2.3183 0.0005 27 1 1.3258 4.5115 0.0000 28 1 5.7765 0.9632 -1.2807 29 1 5.5732 2.5300 -2.1004 30 1 7.0902 2.1637 -1.2445 31 1 5.8788 0.8669 1.1037 32 1 5.5108 2.3118 2.0759 33 1 10.0479 1.6613 3.1276 34 1 4.0193 0.3787 -0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155789598.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:40 Heat of formation + Delta-G solvation = 11.944461 kcal Electronic energy + Delta-G solvation = -20458.986086 eV Core-core repulsion = 17168.852830 eV Total energy + Delta-G solvation = -3290.133256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60431 -40.43709 -38.54816 -36.23278 -35.58729 -32.58302 -31.33435 -30.29812 -28.15402 -27.71683 -25.68556 -25.07849 -22.98810 -21.77665 -20.53448 -18.78527 -18.17994 -18.03335 -16.86811 -16.82370 -16.43002 -16.14358 -15.31277 -14.73090 -14.51633 -14.36160 -13.76362 -13.58035 -13.08792 -12.88337 -12.62983 -12.37076 -11.76491 -11.53505 -11.40615 -11.27331 -10.86429 -10.80214 -10.57385 -10.46216 -10.37330 -9.96423 -9.39572 -9.11625 -8.80390 -8.62785 -7.82988 -6.08486 -4.06744 0.27268 0.89446 1.78757 2.00842 2.80817 3.23304 3.28998 3.32214 3.32857 4.09765 4.32401 4.37110 4.54658 4.70396 4.75378 4.92850 5.00809 5.07996 5.22214 5.40729 5.49841 5.67990 5.81722 5.87154 5.97173 6.14884 6.48693 6.61025 6.75423 6.85349 7.00858 7.43564 7.52690 7.81825 8.36672 8.55590 9.02781 9.50742 11.04176 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.007348 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.335747 B = 3809.656607 C = 4916.731618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.183 3.817 4 C -0.225 4.225 5 C -0.013 4.013 6 C -0.072 4.072 7 N 0.031 4.969 8 O -0.226 6.226 9 O -0.075 6.075 10 C 0.217 3.783 11 N -0.490 5.490 12 C 0.044 3.956 13 C 0.170 3.830 14 C -0.507 4.507 15 H 0.090 0.910 16 C 0.073 3.927 17 N -0.893 5.893 18 Si 0.869 3.131 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.193 4.193 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.024 0.976 29 H 0.051 0.949 30 H 0.097 0.903 31 H -0.006 1.006 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.439 -3.919 -5.897 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.135 3.865 4 C -0.245 4.245 5 C -0.033 4.033 6 C -0.157 4.157 7 N 0.552 4.448 8 O -0.423 6.423 9 O -0.311 6.311 10 C 0.120 3.880 11 N -0.212 5.212 12 C -0.102 4.102 13 C 0.047 3.953 14 C -0.546 4.546 15 H 0.108 0.892 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.696 3.304 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.214 4.214 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.011 0.989 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.506 -4.208 -5.762 20.769 hybrid contribution -0.722 -1.035 0.868 1.532 sum -20.227 -5.243 -4.894 21.461 Atomic orbital electron populations 1.23188 0.77727 1.04526 1.01797 1.86151 1.21994 1.26451 1.87379 1.19204 0.92066 0.84463 0.90757 1.21108 1.00673 0.90827 1.11842 1.20681 0.91498 0.99219 0.91878 1.21096 0.92429 0.83324 1.18839 1.43276 1.01558 1.01830 0.98177 1.94448 1.65624 1.24695 1.57496 1.94725 0.94319 1.93538 1.48557 1.18772 0.92591 0.89013 0.87586 1.60063 0.97364 1.58310 1.05444 1.22329 1.02972 0.95743 0.89179 1.20340 0.97431 0.91192 0.86383 1.20909 0.89845 1.31977 1.11827 0.89225 1.24830 0.94709 0.96073 0.97313 1.69873 1.05986 1.45074 1.32229 0.86969 0.80037 0.81303 0.82099 1.20189 1.20869 1.19404 1.21220 0.91915 0.99318 1.08989 0.92116 0.92147 0.87762 0.83651 0.82890 0.95780 0.93052 0.88409 0.98888 0.95350 0.92511 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.45 10.49 -19.41 -0.20 -3.66 16 3 C 0.18 2.34 6.68 -39.24 -0.26 2.08 16 4 C -0.23 -2.47 9.04 -39.39 -0.36 -2.83 16 5 C -0.01 -0.17 9.54 -39.64 -0.38 -0.55 16 6 C -0.07 -1.25 6.87 -79.72 -0.55 -1.80 16 7 N 0.03 0.62 4.45 34.07 0.15 0.77 16 8 O -0.23 -4.39 18.44 -29.46 -0.54 -4.93 16 9 O -0.08 -1.70 17.09 -29.46 -0.50 -2.20 16 10 C 0.22 3.95 4.65 -83.81 -0.39 3.56 16 11 N -0.49 -10.31 2.59 -180.34 -0.47 -10.78 16 12 C 0.04 0.80 9.08 60.06 0.55 1.35 16 13 C 0.17 4.06 3.37 -4.97 -0.02 4.05 16 14 C -0.51 -14.14 9.07 -34.44 -0.31 -14.46 16 15 H 0.09 2.71 7.34 -52.49 -0.39 2.33 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 17 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 18 Si 0.87 21.18 27.47 -169.99 -4.67 16.52 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 22 C -0.19 -3.01 8.64 -39.24 -0.34 -3.35 16 23 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 24 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 25 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.15 1.05 6.29 -52.49 -0.33 0.72 16 27 H 0.15 1.70 7.60 -52.49 -0.40 1.30 16 28 H 0.02 0.40 7.46 -51.92 -0.39 0.01 16 29 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.10 1.96 6.85 -51.93 -0.36 1.60 16 31 H -0.01 -0.15 6.91 -51.93 -0.36 -0.51 16 32 H 0.03 0.71 7.12 -51.93 -0.37 0.34 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.15 2.32 7.16 -52.49 -0.38 1.95 16 LS Contribution 294.12 15.07 4.43 4.43 Total: -1.00 -32.38 294.12 -5.96 -38.34 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -3.77 Total: -3.44 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.83 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.46 Total: -36.23 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.25 Total: -10.79 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.38 -5.96 -38.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155789598.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.288 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds