Wall clock time and date at job start Mon Mar 30 2020 05:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46749 * 2 1 4 4 H 1.09002 * 109.47271 * 55.00243 * 3 2 1 5 5 C 1.50705 * 109.47053 * 175.00077 * 3 2 1 6 6 H 1.07993 * 120.00434 * 119.99670 * 5 3 2 7 7 C 1.37878 * 119.99694 * 300.00117 * 5 3 2 8 8 N 1.31515 * 120.00122 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 120.00046 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.46930 * 90.00394 * 9 7 5 11 11 H 1.48508 * 109.46771 * 210.00169 * 9 7 5 12 12 H 1.48496 * 109.47172 * 330.00075 * 9 7 5 13 13 N 1.46501 * 109.47296 * 294.99594 * 3 2 1 14 14 C 1.34776 * 119.99382 * 85.00255 * 13 3 2 15 15 O 1.21598 * 120.00161 * 0.02562 * 14 13 3 16 16 C 1.47444 * 119.99369 * 180.02562 * 14 13 3 17 17 C 1.39785 * 120.20050 * 354.06876 * 16 14 13 18 18 C 1.37711 * 119.96615 * 179.97438 * 17 16 14 19 19 C 1.38627 * 120.37163 * 359.97438 * 18 17 16 20 20 C 1.38101 * 120.39659 * 0.02562 * 19 18 17 21 21 F 1.35105 * 119.98744 * 180.02562 * 20 19 18 22 22 C 1.39167 * 120.02586 * 359.69938 * 20 19 18 23 23 N 1.39014 * 120.18294 * 180.30552 * 22 20 19 24 24 H 1.08997 * 109.46780 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47217 * 60.00101 * 1 2 3 26 26 H 1.08999 * 109.46987 * 300.00268 * 1 2 3 27 27 H 1.09005 * 109.47302 * 119.99723 * 2 1 3 28 28 H 1.08996 * 109.47220 * 240.00194 * 2 1 3 29 29 H 0.97001 * 120.00753 * 179.97438 * 8 7 5 30 30 H 0.96997 * 120.00450 * 265.00473 * 13 3 2 31 31 H 1.08007 * 120.01349 * 359.95178 * 17 16 14 32 32 H 1.08004 * 119.81242 * 180.02562 * 18 17 16 33 33 H 1.07996 * 119.80512 * 179.97438 * 19 18 17 34 34 H 0.97007 * 119.99334 * 185.72821 * 23 22 20 35 35 H 0.96999 * 120.00108 * 5.72030 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1101 2.5707 10 1 2.8745 -1.3259 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3413 2.6325 -0.4316 16 6 0.0449 3.3230 -2.6270 17 6 0.9747 3.4715 -3.6601 18 6 0.6050 4.0870 -4.8352 19 6 -0.6869 4.5614 -5.0016 20 6 -1.6178 4.4228 -3.9909 21 9 -2.8747 4.8877 -4.1621 22 6 -1.2635 3.7983 -2.7987 23 7 -2.1997 3.6514 -1.7816 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 5.8771 0.4827 2.1133 30 1 2.2719 2.1232 -1.9978 31 1 1.9828 3.1039 -3.5366 32 1 1.3253 4.2000 -5.6320 33 1 -0.9670 5.0430 -5.9268 34 1 -1.9296 3.2916 -0.9222 35 1 -3.1229 3.9087 -1.9313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156262751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:34 Heat of formation + Delta-G solvation = -52.849549 kcal Electronic energy + Delta-G solvation = -20267.499348 eV Core-core repulsion = 16986.929202 eV Total energy + Delta-G solvation = -3280.570146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.81086 -40.11726 -38.07857 -35.63696 -34.36476 -32.56965 -31.87072 -30.27946 -28.66482 -27.47299 -24.07085 -22.73010 -22.14063 -20.97749 -19.77672 -18.30805 -17.29194 -16.94544 -16.55147 -15.78377 -15.65290 -15.52656 -15.04305 -14.72350 -14.46454 -14.25221 -13.54553 -13.08365 -12.95583 -12.74100 -12.29193 -11.96050 -11.84539 -11.80874 -11.71479 -11.13273 -10.94504 -10.79513 -10.67412 -9.96972 -9.62099 -9.29328 -9.22379 -8.89469 -8.78901 -8.17581 -7.51987 -6.24503 -4.27461 0.87383 1.42550 3.10656 3.20677 3.32865 3.36816 3.72880 3.93421 3.97555 4.28022 4.37644 4.74460 4.88140 5.08980 5.12508 5.29618 5.64093 5.89852 5.92211 5.93576 5.98333 6.12697 6.16363 6.37704 6.61229 6.64902 6.73634 6.78759 6.90262 7.15369 7.23103 7.43087 7.48774 7.95235 8.08651 8.45947 8.71205 8.85619 9.35808 10.87463 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033030 B = 0.005257 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.515083 B = 5325.183671 C = 5880.181433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.689 5.689 14 C 0.561 3.439 15 O -0.559 6.559 16 C -0.199 4.199 17 C -0.040 4.040 18 C -0.169 4.169 19 C -0.081 4.081 20 C -0.007 4.007 21 F -0.145 7.145 22 C 0.252 3.748 23 N -0.850 5.850 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.268 0.732 30 H 0.396 0.604 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.423 0.577 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.502 4.575 -10.945 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.335 5.335 14 C 0.349 3.651 15 O -0.441 6.441 16 C -0.208 4.208 17 C -0.060 4.060 18 C -0.190 4.190 19 C -0.101 4.101 20 C -0.031 4.031 21 F -0.124 7.124 22 C 0.139 3.861 23 N -0.398 5.398 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.268 0.732 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.850 4.452 -10.053 16.165 hybrid contribution -0.559 -0.411 0.514 0.863 sum -12.409 4.040 -9.540 16.165 Atomic orbital electron populations 1.21881 0.96985 0.99109 1.02189 1.22290 0.94353 0.99870 1.01226 1.19208 0.95788 0.88542 0.82610 0.93101 1.21030 0.88493 1.39965 1.07960 0.90122 1.24824 0.94857 0.95098 0.97641 1.69861 1.08688 1.44378 1.29822 0.86904 0.80941 0.79951 0.80933 1.20230 1.22152 1.18486 1.46041 1.14402 1.54999 1.18104 1.17865 0.82640 0.78418 0.86168 1.90348 1.51219 1.61938 1.40582 1.19426 0.93280 1.10460 0.97590 1.21249 0.98675 0.94385 0.91659 1.20632 0.95839 1.03849 0.98664 1.21032 0.93015 0.98436 0.97589 1.17044 0.81435 1.08531 0.96122 1.91426 1.37852 1.87391 1.95771 1.17715 0.89515 0.91189 0.87684 1.43426 1.09723 1.70253 1.16400 0.94946 0.92937 0.92850 0.92683 0.92206 0.92234 0.76905 0.84765 0.84949 0.84844 0.73231 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.51 37.16 0.32 -2.49 16 2 C -0.14 -2.99 5.11 -26.73 -0.14 -3.13 16 3 C 0.24 5.54 1.83 -69.08 -0.13 5.41 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 5 C -0.54 -14.09 9.31 -34.44 -0.32 -14.41 16 6 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 9 Si 0.88 21.32 24.41 -169.99 -4.15 17.17 16 10 H -0.28 -6.46 6.83 56.52 0.39 -6.07 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 13 N -0.69 -13.15 4.97 -56.00 -0.28 -13.43 16 14 C 0.56 10.27 6.31 -12.51 -0.08 10.19 16 15 O -0.56 -11.23 10.78 5.28 0.06 -11.18 16 16 C -0.20 -3.04 5.89 -104.81 -0.62 -3.65 16 17 C -0.04 -0.50 9.52 -39.20 -0.37 -0.88 16 18 C -0.17 -1.79 10.02 -39.63 -0.40 -2.18 16 19 C -0.08 -0.88 10.00 -39.49 -0.40 -1.28 16 20 C -0.01 -0.09 7.30 -39.29 -0.29 -0.38 16 21 F -0.15 -1.88 16.64 2.25 0.04 -1.84 16 22 C 0.25 3.69 6.77 -83.50 -0.57 3.12 16 23 N -0.85 -11.86 8.93 32.60 0.29 -11.57 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.00 5.64 -51.93 -0.29 0.71 16 26 H 0.05 1.08 7.84 -51.93 -0.41 0.68 16 27 H 0.06 1.25 3.22 -51.93 -0.17 1.09 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.40 6.67 6.60 -40.82 -0.27 6.40 16 31 H 0.13 1.48 6.45 -52.48 -0.34 1.15 16 32 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.42 6.62 5.34 -40.94 -0.22 6.40 16 35 H 0.39 4.54 8.32 -40.82 -0.34 4.20 16 LS Contribution 284.93 15.07 4.29 4.29 Total: -1.00 -29.60 284.93 -5.72 -35.32 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -3.67 Total: 13.98 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.08 Total: -7.59 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.79 Total: -50.16 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.06 Total: -11.18 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.15 Total: 17.17 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.60 -5.72 -35.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156262751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.526 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds