Wall clock time and date at job start Mon Mar 30 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46749 * 2 1 4 4 H 1.09002 * 109.47271 * 55.00243 * 3 2 1 5 5 C 1.50705 * 109.47053 * 175.00077 * 3 2 1 6 6 H 1.07993 * 120.00434 * 119.99670 * 5 3 2 7 7 C 1.37878 * 119.99694 * 300.00117 * 5 3 2 8 8 N 1.31515 * 120.00122 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 120.00046 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.46930 * 90.00394 * 9 7 5 11 11 H 1.48508 * 109.46771 * 210.00169 * 9 7 5 12 12 H 1.48496 * 109.47172 * 330.00075 * 9 7 5 13 13 N 1.46501 * 109.47296 * 294.99594 * 3 2 1 14 14 C 1.34776 * 119.99382 * 85.00255 * 13 3 2 15 15 O 1.21598 * 120.00161 * 0.02562 * 14 13 3 16 16 C 1.47444 * 119.99369 * 180.02562 * 14 13 3 17 17 C 1.39785 * 120.20050 * 354.06876 * 16 14 13 18 18 C 1.37711 * 119.96615 * 179.97438 * 17 16 14 19 19 C 1.38627 * 120.37163 * 359.97438 * 18 17 16 20 20 C 1.38101 * 120.39659 * 0.02562 * 19 18 17 21 21 F 1.35105 * 119.98744 * 180.02562 * 20 19 18 22 22 C 1.39167 * 120.02586 * 359.69938 * 20 19 18 23 23 N 1.39014 * 120.18294 * 180.30552 * 22 20 19 24 24 H 1.08997 * 109.46780 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47217 * 60.00101 * 1 2 3 26 26 H 1.08999 * 109.46987 * 300.00268 * 1 2 3 27 27 H 1.09005 * 109.47302 * 119.99723 * 2 1 3 28 28 H 1.08996 * 109.47220 * 240.00194 * 2 1 3 29 29 H 0.97001 * 120.00753 * 179.97438 * 8 7 5 30 30 H 0.96997 * 120.00450 * 265.00473 * 13 3 2 31 31 H 1.08007 * 120.01349 * 359.95178 * 17 16 14 32 32 H 1.08004 * 119.81242 * 180.02562 * 18 17 16 33 33 H 1.07996 * 119.80512 * 179.97438 * 19 18 17 34 34 H 0.97007 * 119.99334 * 185.72821 * 23 22 20 35 35 H 0.96999 * 120.00108 * 5.72030 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1101 2.5707 10 1 2.8745 -1.3259 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3413 2.6325 -0.4316 16 6 0.0449 3.3230 -2.6270 17 6 0.9747 3.4715 -3.6601 18 6 0.6050 4.0870 -4.8352 19 6 -0.6869 4.5614 -5.0016 20 6 -1.6178 4.4228 -3.9909 21 9 -2.8747 4.8877 -4.1621 22 6 -1.2635 3.7983 -2.7987 23 7 -2.1997 3.6514 -1.7816 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 5.8771 0.4827 2.1133 30 1 2.2719 2.1232 -1.9978 31 1 1.9828 3.1039 -3.5366 32 1 1.3253 4.2000 -5.6320 33 1 -0.9670 5.0430 -5.9268 34 1 -1.9296 3.2916 -0.9222 35 1 -3.1229 3.9087 -1.9313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156262751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:33 Heat of formation + Delta-G solvation = -73.661448 kcal Electronic energy + Delta-G solvation = -20268.401819 eV Core-core repulsion = 16986.929202 eV Total energy + Delta-G solvation = -3281.472617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.78933 -41.40756 -39.30346 -37.20408 -35.53862 -34.37167 -33.51419 -31.46893 -29.71175 -29.25063 -25.35692 -24.41615 -23.21877 -22.41054 -21.37423 -19.65451 -18.67491 -18.06257 -17.90166 -17.33792 -16.99863 -16.68788 -16.37223 -16.09398 -15.80693 -15.30550 -15.12951 -14.85600 -14.21920 -13.96913 -13.85927 -13.65336 -13.38587 -12.95202 -12.85893 -12.71351 -12.68010 -12.39023 -11.85177 -11.75235 -11.37805 -11.23319 -10.86016 -10.70056 -9.98367 -9.71189 -8.55703 -8.37112 -6.42574 -0.15418 0.45465 1.27802 1.36085 1.45237 1.89970 2.26593 2.37281 2.83795 2.88682 2.99272 3.31983 3.75395 3.95543 4.06847 4.23765 4.32675 4.37008 4.45078 4.65404 4.83284 4.93729 4.98778 5.02260 5.12111 5.22823 5.29575 5.40378 5.45294 5.51743 5.61706 5.84046 6.13489 6.42438 6.58882 6.78508 6.89545 7.20628 7.44847 8.77927 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033030 B = 0.005257 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.515083 B = 5325.183671 C = 5880.181433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.026 0.974 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.935 3.065 10 H -0.261 1.261 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.691 5.691 14 C 0.559 3.441 15 O -0.581 6.581 16 C -0.223 4.223 17 C -0.042 4.042 18 C -0.157 4.157 19 C -0.066 4.066 20 C -0.019 4.019 21 F -0.147 7.147 22 C 0.237 3.763 23 N -0.853 5.853 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.270 0.730 30 H 0.406 0.594 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.416 0.584 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.628 4.673 -12.850 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.176 4.176 3 C 0.145 3.855 4 H 0.044 0.956 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.183 1.183 13 N -0.339 5.339 14 C 0.350 3.650 15 O -0.465 6.465 16 C -0.232 4.232 17 C -0.061 4.061 18 C -0.177 4.177 19 C -0.086 4.086 20 C -0.043 4.043 21 F -0.126 7.126 22 C 0.124 3.876 23 N -0.401 5.401 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.243 0.757 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.185 0.815 34 H 0.258 0.742 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.001 4.563 -12.003 18.274 hybrid contribution -0.213 -0.334 0.974 1.051 sum -13.215 4.229 -11.030 17.725 Atomic orbital electron populations 1.21762 0.95218 1.00514 1.01625 1.22210 0.95866 0.98449 1.01069 1.18830 0.93329 0.89659 0.83663 0.95615 1.21279 0.90267 1.38544 1.07013 0.92362 1.25520 0.95681 0.95873 0.99796 1.69969 1.10264 1.46140 1.30834 0.86055 0.79386 0.79942 0.78352 1.18639 1.22254 1.18345 1.45826 1.15322 1.55551 1.17179 1.18324 0.81789 0.77806 0.87130 1.90340 1.51730 1.62636 1.41769 1.19237 0.94439 1.12435 0.97063 1.21475 0.98664 0.94248 0.91696 1.21037 0.96342 1.01875 0.98483 1.21473 0.92425 0.96747 0.97911 1.17226 0.81949 1.08913 0.96209 1.91424 1.38004 1.87410 1.95732 1.17920 0.89448 0.91794 0.88459 1.43368 1.10301 1.70366 1.16044 0.92472 0.92859 0.94085 0.93745 0.91352 0.92106 0.75745 0.83728 0.81353 0.81544 0.74212 0.76958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 8.51 71.98 0.61 -4.42 16 2 C -0.14 -5.79 5.11 30.60 0.16 -5.64 16 3 C 0.25 11.48 1.83 44.25 0.08 11.56 16 4 H 0.03 1.33 6.63 -2.39 -0.02 1.31 16 5 C -0.53 -28.40 9.31 25.60 0.24 -28.16 16 6 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16 7 C 0.03 1.73 5.45 84.65 0.46 2.19 16 8 N -0.93 -55.29 13.96 21.45 0.30 -54.99 16 9 Si 0.94 44.12 24.41 68.60 1.67 45.80 16 10 H -0.26 -11.59 6.83 99.48 0.68 -10.91 16 11 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.26 -12.06 6.53 99.48 0.65 -11.41 16 13 N -0.69 -26.30 4.97 -449.35 -2.23 -28.53 16 14 C 0.56 20.37 6.31 86.67 0.55 20.92 16 15 O -0.58 -23.55 10.78 -4.02 -0.04 -23.59 16 16 C -0.22 -6.58 5.89 -19.99 -0.12 -6.70 16 17 C -0.04 -0.94 9.52 22.52 0.21 -0.73 16 18 C -0.16 -2.68 10.02 22.24 0.22 -2.46 16 19 C -0.07 -1.18 10.00 22.33 0.22 -0.96 16 20 C -0.02 -0.45 7.30 22.46 0.16 -0.29 16 21 F -0.15 -3.49 16.64 44.97 0.75 -2.74 16 22 C 0.24 6.66 6.77 38.72 0.26 6.92 16 23 N -0.85 -23.57 8.93 -50.78 -0.45 -24.03 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.98 5.64 -2.39 -0.01 1.97 16 26 H 0.04 1.62 7.84 -2.39 -0.02 1.60 16 27 H 0.04 1.96 3.22 -2.38 -0.01 1.96 16 28 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.41 13.54 6.60 -92.71 -0.61 12.93 16 31 H 0.15 2.89 6.45 -2.91 -0.02 2.88 16 32 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.42 13.11 5.34 -94.60 -0.51 12.61 16 35 H 0.40 9.13 8.32 -92.71 -0.77 8.36 16 Total: -1.00 -64.32 284.93 2.25 -62.07 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.81 Total: 33.76 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 3.07 Total: -7.75 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -2.39 Total: -107.55 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.04 Total: -23.59 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.75 Total: -2.74 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.67 Total: 45.80 kcal Total: -64.32 2.25 -62.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156262751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.591 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds