Wall clock time and date at job start Mon Mar 30 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 H 1.09000 * 109.47167 * 304.99903 * 3 2 1 5 5 C 1.50697 * 109.47355 * 184.99932 * 3 2 1 6 6 H 1.08007 * 119.99897 * 240.00186 * 5 3 2 7 7 C 1.37878 * 120.00142 * 59.72030 * 5 3 2 8 8 N 1.31509 * 119.99929 * 0.28119 * 7 5 3 9 9 Si 1.86804 * 120.00100 * 180.27795 * 7 5 3 10 10 H 1.48502 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46814 * 119.99975 * 9 7 5 12 12 H 1.48499 * 109.46822 * 240.00002 * 9 7 5 13 13 N 1.46501 * 109.47354 * 64.99758 * 3 2 1 14 14 C 1.34782 * 120.00038 * 275.00240 * 13 3 2 15 15 O 1.21600 * 119.99797 * 359.97438 * 14 13 3 16 16 C 1.47430 * 119.99986 * 179.97438 * 14 13 3 17 17 C 1.39794 * 120.19932 * 354.06315 * 16 14 13 18 18 C 1.37715 * 119.96811 * 179.97438 * 17 16 14 19 19 C 1.38628 * 120.36545 * 0.02562 * 18 17 16 20 20 C 1.38101 * 120.40392 * 0.02562 * 19 18 17 21 21 F 1.35100 * 119.98958 * 179.97438 * 20 19 18 22 22 C 1.39169 * 120.01901 * 359.69966 * 20 19 18 23 23 N 1.39021 * 120.17774 * 180.30161 * 22 20 19 24 24 H 1.09004 * 109.47384 * 60.00211 * 1 2 3 25 25 H 1.09003 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47378 * 300.00095 * 1 2 3 27 27 H 1.08999 * 109.47378 * 239.99905 * 2 1 3 28 28 H 1.09004 * 109.46917 * 119.99533 * 2 1 3 29 29 H 0.97001 * 120.00303 * 180.02562 * 8 7 5 30 30 H 0.97000 * 120.00073 * 94.99829 * 13 3 2 31 31 H 1.08003 * 120.01186 * 0.02562 * 17 16 14 32 32 H 1.07992 * 119.81229 * 180.02562 * 18 17 16 33 33 H 1.08009 * 119.79944 * 180.02562 * 19 18 17 34 34 H 0.96999 * 119.99116 * 185.72489 * 23 22 20 35 35 H 0.96993 * 120.00357 * 5.72256 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1435 0.8733 -1.2252 8 7 3.4065 0.3320 -2.1703 9 14 6.0055 0.8687 -1.3749 10 1 6.5993 1.5345 -0.1877 11 1 6.4924 -0.5321 -1.4514 12 1 6.4050 1.5995 -2.6043 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6645 1.3669 15 8 -0.3414 2.6326 0.4316 16 6 0.0448 3.3232 2.6268 17 6 0.8820 3.2556 3.7443 18 6 0.5130 3.8731 4.9186 19 6 -0.6866 4.5629 5.0008 20 6 -1.5258 4.6385 3.9065 21 9 -2.6932 5.3125 3.9960 22 6 -1.1665 4.0254 2.7100 23 7 -2.0057 4.1047 1.6045 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.8298 -0.0701 -2.9450 30 1 2.2719 2.1232 1.9978 31 1 1.8181 2.7200 3.6864 32 1 1.1618 3.8196 5.7802 33 1 -0.9668 5.0442 5.9262 34 1 -1.7941 3.6084 0.7984 35 1 -2.8028 4.6562 1.6393 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156262854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:37 Heat of formation + Delta-G solvation = -61.170656 kcal Electronic energy + Delta-G solvation = -20172.573513 eV Core-core repulsion = 16891.642537 eV Total energy + Delta-G solvation = -3280.930976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.75672 -39.97124 -37.91309 -35.40969 -34.24827 -32.53815 -31.40725 -30.06754 -28.58996 -26.95459 -24.00824 -22.94825 -22.05103 -20.60119 -19.47805 -18.19900 -17.20254 -16.86119 -16.32399 -15.61066 -15.51128 -15.35553 -14.81960 -14.56523 -14.39407 -14.26404 -13.31326 -12.91012 -12.72521 -12.65930 -11.97253 -11.78744 -11.69407 -11.50657 -11.29088 -10.98980 -10.87731 -10.72874 -10.33935 -10.22538 -9.66723 -9.13972 -9.07109 -8.81437 -8.54193 -7.93813 -7.43574 -6.16042 -4.25514 0.94951 1.48718 3.21373 3.22436 3.29947 3.32295 3.85876 4.03128 4.09349 4.30922 4.48810 4.81536 4.93618 5.15760 5.20160 5.38426 5.72424 5.97167 6.00369 6.21520 6.35945 6.42634 6.42953 6.61928 6.79957 7.01182 7.14847 7.27289 7.34873 7.53018 7.59680 7.68977 7.85549 8.02361 8.16493 8.58688 8.73056 9.05410 9.41896 10.89304 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030035 B = 0.004951 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.025887 B = 5653.720742 C = 6175.315861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.696 5.696 14 C 0.558 3.442 15 O -0.557 6.557 16 C -0.197 4.197 17 C -0.042 4.042 18 C -0.171 4.171 19 C -0.083 4.083 20 C -0.008 4.008 21 F -0.146 7.146 22 C 0.252 3.748 23 N -0.849 5.849 24 H 0.050 0.950 25 H 0.023 0.977 26 H 0.038 0.962 27 H 0.100 0.900 28 H 0.032 0.968 29 H 0.264 0.736 30 H 0.390 0.610 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.424 0.576 35 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 5.722 12.055 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.342 5.342 14 C 0.345 3.655 15 O -0.439 6.439 16 C -0.205 4.205 17 C -0.062 4.062 18 C -0.191 4.191 19 C -0.103 4.103 20 C -0.032 4.032 21 F -0.125 7.125 22 C 0.138 3.862 23 N -0.398 5.398 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.223 0.777 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.269 0.731 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.689 5.541 11.081 14.080 hybrid contribution 0.822 0.148 0.075 0.838 sum -5.868 5.689 11.156 13.829 Atomic orbital electron populations 1.21844 0.98357 0.98121 1.01186 1.21939 0.92626 0.99695 1.02403 1.18852 0.94379 0.89234 0.80771 0.93107 1.21256 0.90601 1.38922 1.06507 0.91983 1.24877 0.98646 0.94737 0.95352 1.69896 1.35074 1.37497 1.09447 0.86399 0.84810 0.77786 0.78149 1.19706 1.20866 1.20883 1.46385 1.14082 1.55093 1.18671 1.17836 0.82911 0.78613 0.86091 1.90349 1.51188 1.61702 1.40636 1.19531 0.95908 1.08372 0.96737 1.21223 0.97932 0.95495 0.91504 1.20608 0.97407 1.02506 0.98610 1.21006 0.93913 0.98339 0.97018 1.17051 0.86175 1.05240 0.94725 1.91420 1.45714 1.78657 1.96694 1.17735 0.89730 0.91887 0.86827 1.43449 1.26556 1.53548 1.16206 0.93137 0.95827 0.94268 0.88177 0.94961 0.92587 0.77675 0.84951 0.85096 0.84939 0.73140 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.55 2.24 -69.08 -0.16 6.39 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.71 8.73 -34.44 -0.30 -14.01 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.17 11.28 55.43 0.63 -23.54 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 13 N -0.70 -13.96 4.97 -56.01 -0.28 -14.24 16 14 C 0.56 10.85 6.31 -12.52 -0.08 10.77 16 15 O -0.56 -12.00 10.78 5.28 0.06 -11.94 16 16 C -0.20 -3.17 5.89 -104.81 -0.62 -3.78 16 17 C -0.04 -0.55 9.52 -39.19 -0.37 -0.92 16 18 C -0.17 -1.88 10.02 -39.63 -0.40 -2.28 16 19 C -0.08 -0.95 10.00 -39.49 -0.39 -1.34 16 20 C -0.01 -0.11 7.30 -39.29 -0.29 -0.39 16 21 F -0.15 -1.96 16.64 2.25 0.04 -1.93 16 22 C 0.25 3.88 6.77 -83.50 -0.57 3.32 16 23 N -0.85 -12.65 8.93 32.60 0.29 -12.36 16 24 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 27 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.39 6.79 6.60 -40.82 -0.27 6.52 16 31 H 0.13 1.51 6.45 -52.48 -0.34 1.17 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.42 7.11 5.34 -40.94 -0.22 6.89 16 35 H 0.39 4.86 8.32 -40.82 -0.34 4.52 16 LS Contribution 291.67 15.07 4.40 4.40 Total: -1.00 -28.43 291.67 -6.79 -35.22 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -3.80 Total: 15.65 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -3.09 Total: -6.43 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.64 Total: -50.14 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.06 Total: -11.94 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.43 -6.79 -35.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156262854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.950 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds