Wall clock time and date at job start Mon Mar 30 2020 05:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 H 1.09000 * 109.47167 * 304.99903 * 3 2 1 5 5 C 1.50697 * 109.47355 * 184.99932 * 3 2 1 6 6 H 1.08007 * 119.99897 * 240.00186 * 5 3 2 7 7 C 1.37878 * 120.00142 * 59.72030 * 5 3 2 8 8 N 1.31509 * 119.99929 * 0.28119 * 7 5 3 9 9 Si 1.86804 * 120.00100 * 180.27795 * 7 5 3 10 10 H 1.48502 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46814 * 119.99975 * 9 7 5 12 12 H 1.48499 * 109.46822 * 240.00002 * 9 7 5 13 13 N 1.46501 * 109.47354 * 64.99758 * 3 2 1 14 14 C 1.34782 * 120.00038 * 275.00240 * 13 3 2 15 15 O 1.21600 * 119.99797 * 359.97438 * 14 13 3 16 16 C 1.47430 * 119.99986 * 179.97438 * 14 13 3 17 17 C 1.39794 * 120.19932 * 354.06315 * 16 14 13 18 18 C 1.37715 * 119.96811 * 179.97438 * 17 16 14 19 19 C 1.38628 * 120.36545 * 0.02562 * 18 17 16 20 20 C 1.38101 * 120.40392 * 0.02562 * 19 18 17 21 21 F 1.35100 * 119.98958 * 179.97438 * 20 19 18 22 22 C 1.39169 * 120.01901 * 359.69966 * 20 19 18 23 23 N 1.39021 * 120.17774 * 180.30161 * 22 20 19 24 24 H 1.09004 * 109.47384 * 60.00211 * 1 2 3 25 25 H 1.09003 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47378 * 300.00095 * 1 2 3 27 27 H 1.08999 * 109.47378 * 239.99905 * 2 1 3 28 28 H 1.09004 * 109.46917 * 119.99533 * 2 1 3 29 29 H 0.97001 * 120.00303 * 180.02562 * 8 7 5 30 30 H 0.97000 * 120.00073 * 94.99829 * 13 3 2 31 31 H 1.08003 * 120.01186 * 0.02562 * 17 16 14 32 32 H 1.07992 * 119.81229 * 180.02562 * 18 17 16 33 33 H 1.08009 * 119.79944 * 180.02562 * 19 18 17 34 34 H 0.96999 * 119.99116 * 185.72489 * 23 22 20 35 35 H 0.96993 * 120.00357 * 5.72256 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1435 0.8733 -1.2252 8 7 3.4065 0.3320 -2.1703 9 14 6.0055 0.8687 -1.3749 10 1 6.5993 1.5345 -0.1877 11 1 6.4924 -0.5321 -1.4514 12 1 6.4050 1.5995 -2.6043 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6645 1.3669 15 8 -0.3414 2.6326 0.4316 16 6 0.0448 3.3232 2.6268 17 6 0.8820 3.2556 3.7443 18 6 0.5130 3.8731 4.9186 19 6 -0.6866 4.5629 5.0008 20 6 -1.5258 4.6385 3.9065 21 9 -2.6932 5.3125 3.9960 22 6 -1.1665 4.0254 2.7100 23 7 -2.0057 4.1047 1.6045 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.8298 -0.0701 -2.9450 30 1 2.2719 2.1232 1.9978 31 1 1.8181 2.7200 3.6864 32 1 1.1618 3.8196 5.7802 33 1 -0.9668 5.0442 5.9262 34 1 -1.7941 3.6084 0.7984 35 1 -2.8028 4.6562 1.6393 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156262854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:36 Heat of formation + Delta-G solvation = -79.711335 kcal Electronic energy + Delta-G solvation = -20173.377497 eV Core-core repulsion = 16891.642537 eV Total energy + Delta-G solvation = -3281.734960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.78519 -41.32017 -39.21581 -37.05007 -35.51838 -34.27590 -33.09840 -31.39387 -29.67015 -28.80611 -25.46521 -24.57270 -23.14747 -22.13931 -21.22845 -19.54188 -18.56518 -17.91176 -17.77925 -17.17709 -16.88159 -16.67610 -16.20102 -16.12475 -15.76109 -15.30584 -14.88523 -14.58254 -14.10187 -13.93854 -13.58143 -13.28070 -13.17427 -12.87400 -12.78224 -12.67579 -12.65501 -12.13267 -12.04949 -11.73792 -11.57422 -11.03120 -10.67311 -10.50694 -9.93393 -9.59686 -8.54584 -8.15018 -6.31889 -0.12692 0.46881 1.45443 1.47186 1.58444 1.96134 2.35075 2.57880 2.87126 2.90557 3.15148 3.35464 3.79399 3.97881 4.10744 4.38542 4.50738 4.58221 4.64781 4.78366 4.93805 5.00584 5.09437 5.26543 5.31374 5.44087 5.46073 5.55012 5.61448 5.80359 5.85830 5.92586 6.17142 6.43522 6.73758 6.84746 6.97264 7.35303 7.57140 8.90477 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030035 B = 0.004951 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.025887 B = 5653.720742 C = 6175.315861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.002 0.998 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.695 5.695 14 C 0.553 3.447 15 O -0.586 6.586 16 C -0.222 4.222 17 C -0.041 4.041 18 C -0.156 4.156 19 C -0.067 4.067 20 C -0.020 4.020 21 F -0.147 7.147 22 C 0.233 3.767 23 N -0.855 5.855 24 H 0.028 0.972 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.403 0.597 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.415 0.585 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 6.292 15.095 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.343 5.343 14 C 0.343 3.657 15 O -0.470 6.470 16 C -0.231 4.231 17 C -0.060 4.060 18 C -0.176 4.176 19 C -0.087 4.087 20 C -0.044 4.044 21 F -0.126 7.126 22 C 0.120 3.880 23 N -0.403 5.403 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.239 0.761 31 H 0.165 0.835 32 H 0.189 0.811 33 H 0.185 0.815 34 H 0.257 0.743 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.679 6.137 14.178 16.460 hybrid contribution 0.438 0.032 -0.802 0.915 sum -5.240 6.170 13.376 15.635 Atomic orbital electron populations 1.21677 0.97026 0.99082 1.00281 1.21786 0.93721 0.99119 1.01364 1.18415 0.93753 0.89171 0.81160 0.98058 1.21600 0.91348 1.38672 1.06831 0.90954 1.25736 1.03170 0.94388 0.95037 1.70047 1.36946 1.38331 1.09994 0.85344 0.79305 0.77773 0.78192 1.18337 1.20531 1.21205 1.46089 1.14952 1.55493 1.17722 1.18397 0.82117 0.78028 0.87140 1.90343 1.51909 1.62578 1.42146 1.19316 0.97422 1.10274 0.96104 1.21482 0.97900 0.95417 0.91239 1.21050 0.97385 1.00411 0.98773 1.21477 0.93065 0.96835 0.97285 1.17243 0.86735 1.05573 0.94828 1.91418 1.45876 1.78669 1.96669 1.17979 0.89800 0.92607 0.87591 1.43390 1.27123 1.53782 1.15980 0.95266 0.93784 0.93893 0.90918 0.94040 0.92651 0.76063 0.83464 0.81109 0.81478 0.74325 0.77044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.51 71.98 0.61 -4.86 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.69 16 3 C 0.28 13.94 2.24 44.24 0.10 14.04 16 4 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 5 C -0.55 -28.22 8.73 25.60 0.22 -27.99 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.89 5.29 84.66 0.45 1.33 16 8 N -0.91 -51.51 11.28 21.45 0.24 -51.27 16 9 Si 0.97 41.31 29.54 68.60 2.03 43.34 16 10 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.69 -28.09 4.97 -449.37 -2.23 -30.32 16 14 C 0.55 21.89 6.31 86.66 0.55 22.44 16 15 O -0.59 -26.40 10.78 -4.03 -0.04 -26.44 16 16 C -0.22 -6.99 5.89 -19.99 -0.12 -7.11 16 17 C -0.04 -0.96 9.52 22.52 0.21 -0.74 16 18 C -0.16 -2.71 10.02 22.24 0.22 -2.49 16 19 C -0.07 -1.25 10.00 22.33 0.22 -1.03 16 20 C -0.02 -0.50 7.30 22.46 0.16 -0.33 16 21 F -0.15 -3.71 16.64 44.97 0.75 -2.96 16 22 C 0.23 7.06 6.77 38.72 0.26 7.32 16 23 N -0.86 -26.06 8.93 -50.78 -0.45 -26.52 16 24 H 0.03 1.38 7.84 -2.38 -0.02 1.36 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.04 1.85 5.65 -2.39 -0.01 1.84 16 27 H 0.07 3.95 5.94 -2.39 -0.01 3.94 16 28 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.40 13.71 6.60 -92.71 -0.61 13.10 16 31 H 0.15 2.91 6.45 -2.91 -0.02 2.89 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.41 14.58 5.34 -94.63 -0.51 14.08 16 35 H 0.40 10.15 8.32 -92.71 -0.77 9.38 16 Total: -1.00 -63.54 291.67 2.62 -60.92 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.73 Total: 38.37 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 3.07 Total: -5.12 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -2.45 Total: -108.11 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.04 Total: -26.44 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.75 Total: -2.96 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -63.54 2.62 -60.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156262854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.793 kcal (2) G-P(sol) polarization free energy of solvation -63.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds