Wall clock time and date at job start Mon Mar 30 2020 04:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00307 * 2 1 4 4 H 1.48505 * 109.47028 * 240.00261 * 3 2 1 5 5 H 1.48501 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47356 * 120.00177 * 3 2 1 7 7 C 1.37876 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47068 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47134 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47257 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00074 * 180.02562 * 12 11 10 14 14 O 1.21605 * 119.99882 * 359.97438 * 13 12 11 15 15 C 1.47434 * 119.99994 * 180.02562 * 13 12 11 16 16 C 1.39787 * 120.19749 * 6.02562 * 15 13 12 17 17 C 1.37706 * 119.96786 * 180.30048 * 16 15 13 18 18 C 1.38635 * 120.36985 * 359.97438 * 17 16 15 19 19 C 1.38102 * 120.39846 * 0.02562 * 18 17 16 20 20 F 1.35097 * 119.98818 * 179.97438 * 19 18 17 21 21 C 1.39164 * 120.02367 * 0.02562 * 19 18 17 22 22 N 1.39008 * 120.18514 * 179.97438 * 21 19 18 23 23 H 0.97012 * 119.99650 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.47242 * 59.99897 * 9 7 2 25 25 H 1.09001 * 109.47355 * 299.99780 * 9 7 2 26 26 H 1.08994 * 109.47037 * 60.00337 * 10 9 7 27 27 H 1.08999 * 109.47297 * 299.99730 * 10 9 7 28 28 H 1.09007 * 109.46814 * 59.99879 * 11 10 9 29 29 H 1.09007 * 109.47216 * 300.00342 * 11 10 9 30 30 H 0.96999 * 119.99545 * 359.97438 * 12 11 10 31 31 H 1.07997 * 120.01835 * 0.25350 * 16 15 13 32 32 H 1.08008 * 119.81999 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.80336 * 180.02562 * 18 17 16 34 34 H 0.97001 * 120.00860 * 203.83140 * 22 21 19 35 35 H 0.97010 * 120.00064 * 23.83065 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4320 -6.1007 -0.0007 13 6 1.9827 -7.3713 -0.0019 14 8 0.7871 -7.5934 -0.0019 15 6 2.9407 -8.4920 -0.0019 16 6 4.3108 -8.2458 0.1260 17 6 5.2019 -9.2956 0.1192 18 6 4.7485 -10.5990 -0.0136 19 6 3.3983 -10.8596 -0.1410 20 9 2.9656 -12.1329 -0.2705 21 6 2.4833 -9.8110 -0.1373 22 7 1.1235 -10.0695 -0.2659 23 1 -0.4850 0.8402 0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6044 0.8905 27 1 2.8718 -3.6045 -0.8895 28 1 0.8537 -5.0445 -0.8904 29 1 0.8530 -5.0451 0.8897 30 1 3.3856 -5.9234 -0.0011 31 1 4.6703 -7.2327 0.2295 32 1 6.2600 -9.1026 0.2178 33 1 5.4554 -11.4154 -0.0174 34 1 0.5289 -9.3820 -0.6044 35 1 0.7692 -10.9376 -0.0171 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156301058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:57 Heat of formation + Delta-G solvation = -70.461666 kcal Electronic energy + Delta-G solvation = -18970.832823 eV Core-core repulsion = 15689.498958 eV Total energy + Delta-G solvation = -3281.333864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.02214 -40.35992 -38.25452 -35.74103 -34.59619 -33.35835 -31.76569 -30.50994 -28.91348 -26.79152 -24.34093 -22.99889 -22.24061 -20.86051 -20.25288 -18.31574 -17.35167 -17.15885 -16.43510 -16.20036 -15.94168 -15.52589 -15.29047 -15.06427 -14.69520 -14.47760 -13.94560 -13.66656 -13.31473 -12.67321 -12.33090 -12.16446 -12.00392 -11.84100 -11.74606 -10.90689 -10.89638 -10.75616 -10.64432 -9.93058 -9.90073 -9.42155 -9.20002 -9.15731 -8.82905 -8.39067 -7.84056 -6.03827 -4.07162 0.57690 1.11849 2.74486 3.23478 3.30742 3.35710 3.37663 3.60552 3.67991 4.08247 4.42393 4.48390 4.60175 4.78671 5.00264 5.31976 5.34067 5.56984 5.64737 5.73090 5.74930 5.89156 6.08975 6.11598 6.38369 6.47920 6.55464 6.76996 6.95803 7.24415 7.57041 7.60549 7.70575 7.72993 7.94518 8.29516 8.36058 8.99266 9.57162 11.07421 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.045307 B = 0.003046 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.861075 B = 9191.372500 C = 9777.018741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.717 5.717 13 C 0.563 3.437 14 O -0.550 6.550 15 C -0.193 4.193 16 C -0.047 4.047 17 C -0.160 4.160 18 C -0.084 4.084 19 C 0.007 3.993 20 F -0.142 7.142 21 C 0.247 3.753 22 N -0.853 5.853 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.399 0.601 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.419 0.581 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.610 -21.056 -0.151 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.367 5.367 13 C 0.351 3.649 14 O -0.430 6.430 15 C -0.202 4.202 16 C -0.066 4.066 17 C -0.180 4.180 18 C -0.103 4.103 19 C -0.017 4.017 20 F -0.120 7.120 21 C 0.135 3.865 22 N -0.398 5.398 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.234 0.766 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.258 0.742 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.531 -21.047 -0.174 22.710 hybrid contribution 0.521 0.711 -0.015 0.881 sum 9.052 -20.336 -0.189 22.260 Atomic orbital electron populations 1.69957 1.06077 1.26835 1.50417 1.25028 0.94860 0.99317 0.95231 0.86636 0.79563 0.83057 0.78604 1.20228 1.21269 1.20221 1.21165 0.92969 0.90943 1.51147 0.92667 1.19023 0.93826 0.90813 0.97662 1.21903 0.99825 0.93280 1.00955 1.21699 0.91827 0.84929 1.02175 1.46080 1.10974 1.05624 1.74054 1.17947 0.87672 0.82806 0.76430 1.90559 1.16485 1.84242 1.51667 1.19445 0.94325 0.91837 1.14598 1.21213 0.91199 0.99841 0.94380 1.20691 1.00183 0.91197 1.05918 1.21115 0.93124 0.98492 0.97600 1.17189 0.92263 0.78321 1.13918 1.91451 1.90364 1.35920 1.94312 1.17644 0.85444 0.91326 0.92114 1.42852 1.04945 1.19917 1.72065 0.92845 0.96277 0.96259 0.92640 0.92647 0.91564 0.91543 0.76633 0.84891 0.84694 0.84542 0.74184 0.77431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.12 1.98 5.67 -4.04 -0.02 1.95 16 12 N -0.72 -9.98 5.50 -61.38 -0.34 -10.32 16 13 C 0.56 8.30 7.74 -12.52 -0.10 8.20 16 14 O -0.55 -9.56 13.81 5.27 0.07 -9.49 16 15 C -0.19 -2.35 5.89 -104.81 -0.62 -2.97 16 16 C -0.05 -0.43 9.52 -39.20 -0.37 -0.81 16 17 C -0.16 -1.25 10.02 -39.63 -0.40 -1.65 16 18 C -0.08 -0.71 10.00 -39.48 -0.39 -1.11 16 19 C 0.01 0.07 7.30 -39.29 -0.29 -0.21 16 20 F -0.14 -1.55 16.79 2.25 0.04 -1.52 16 21 C 0.25 2.97 6.77 -83.50 -0.57 2.40 16 22 N -0.85 -9.87 8.46 32.60 0.28 -9.60 16 23 H 0.26 7.38 8.31 -40.81 -0.34 7.04 16 24 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.40 4.41 6.54 -40.82 -0.27 4.14 16 31 H 0.13 0.95 6.45 -52.49 -0.34 0.61 16 32 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.42 5.42 6.08 -40.82 -0.25 5.17 16 35 H 0.40 3.77 8.55 -40.82 -0.35 3.43 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -31.65 305.07 -7.21 -38.86 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.13 Total: 6.51 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -3.44 Total: -9.41 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.67 Total: -45.81 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.65 -7.21 -38.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156301058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.603 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds