Wall clock time and date at job start Mon Mar 30 2020 04:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00307 * 2 1 4 4 H 1.48505 * 109.47028 * 240.00261 * 3 2 1 5 5 H 1.48501 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47356 * 120.00177 * 3 2 1 7 7 C 1.37876 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47068 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47134 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47257 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00074 * 180.02562 * 12 11 10 14 14 O 1.21605 * 119.99882 * 359.97438 * 13 12 11 15 15 C 1.47434 * 119.99994 * 180.02562 * 13 12 11 16 16 C 1.39787 * 120.19749 * 6.02562 * 15 13 12 17 17 C 1.37706 * 119.96786 * 180.30048 * 16 15 13 18 18 C 1.38635 * 120.36985 * 359.97438 * 17 16 15 19 19 C 1.38102 * 120.39846 * 0.02562 * 18 17 16 20 20 F 1.35097 * 119.98818 * 179.97438 * 19 18 17 21 21 C 1.39164 * 120.02367 * 0.02562 * 19 18 17 22 22 N 1.39008 * 120.18514 * 179.97438 * 21 19 18 23 23 H 0.97012 * 119.99650 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.47242 * 59.99897 * 9 7 2 25 25 H 1.09001 * 109.47355 * 299.99780 * 9 7 2 26 26 H 1.08994 * 109.47037 * 60.00337 * 10 9 7 27 27 H 1.08999 * 109.47297 * 299.99730 * 10 9 7 28 28 H 1.09007 * 109.46814 * 59.99879 * 11 10 9 29 29 H 1.09007 * 109.47216 * 300.00342 * 11 10 9 30 30 H 0.96999 * 119.99545 * 359.97438 * 12 11 10 31 31 H 1.07997 * 120.01835 * 0.25350 * 16 15 13 32 32 H 1.08008 * 119.81999 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.80336 * 180.02562 * 18 17 16 34 34 H 0.97001 * 120.00860 * 203.83140 * 22 21 19 35 35 H 0.97010 * 120.00064 * 23.83065 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4320 -6.1007 -0.0007 13 6 1.9827 -7.3713 -0.0019 14 8 0.7871 -7.5934 -0.0019 15 6 2.9407 -8.4920 -0.0019 16 6 4.3108 -8.2458 0.1260 17 6 5.2019 -9.2956 0.1192 18 6 4.7485 -10.5990 -0.0136 19 6 3.3983 -10.8596 -0.1410 20 9 2.9656 -12.1329 -0.2705 21 6 2.4833 -9.8110 -0.1373 22 7 1.1235 -10.0695 -0.2659 23 1 -0.4850 0.8402 0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6044 0.8905 27 1 2.8718 -3.6045 -0.8895 28 1 0.8537 -5.0445 -0.8904 29 1 0.8530 -5.0451 0.8897 30 1 3.3856 -5.9234 -0.0011 31 1 4.6703 -7.2327 0.2295 32 1 6.2600 -9.1026 0.2178 33 1 5.4554 -11.4154 -0.0174 34 1 0.5289 -9.3820 -0.6044 35 1 0.7692 -10.9376 -0.0171 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156301058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:56 Heat of formation + Delta-G solvation = -91.935513 kcal Electronic energy + Delta-G solvation = -18971.763999 eV Core-core repulsion = 15689.498958 eV Total energy + Delta-G solvation = -3282.265040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.81986 -41.36566 -39.20949 -37.08560 -35.69725 -35.01431 -33.28229 -31.65876 -29.71267 -28.50713 -25.62428 -24.35616 -23.12420 -22.29671 -21.57688 -19.25858 -18.56449 -18.13758 -17.94275 -17.21538 -16.90782 -16.67857 -16.54310 -16.39433 -15.96666 -15.38026 -15.33467 -14.87766 -14.22267 -14.12705 -13.75572 -13.67301 -13.32609 -12.87326 -12.73734 -12.70146 -12.53027 -12.39157 -11.69253 -11.65952 -11.53037 -11.24073 -10.84090 -10.53785 -10.23380 -9.84037 -8.66054 -8.18570 -6.30082 -0.22384 0.37195 1.42922 1.45853 1.53622 1.77384 2.11180 2.43573 2.75731 2.85278 3.15379 3.26846 3.68139 3.91610 4.01414 4.18664 4.22487 4.33101 4.55861 4.59350 4.89026 4.95216 4.95454 5.00073 5.18202 5.25495 5.39592 5.40163 5.53212 5.71861 5.79570 5.85182 6.23006 6.38819 6.52154 6.77410 6.87620 7.20671 7.39675 8.93357 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.045307 B = 0.003046 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.861075 B = 9191.372500 C = 9777.018741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.130 3.870 12 N -0.707 5.707 13 C 0.559 3.441 14 O -0.585 6.585 15 C -0.214 4.214 16 C -0.043 4.043 17 C -0.149 4.149 18 C -0.072 4.072 19 C -0.010 4.010 20 F -0.147 7.147 21 C 0.227 3.773 22 N -0.858 5.858 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.415 0.585 31 H 0.156 0.844 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.412 0.588 35 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.120 -21.332 -0.024 25.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.140 4.140 11 C 0.007 3.993 12 N -0.358 5.358 13 C 0.349 3.651 14 O -0.467 6.467 15 C -0.223 4.223 16 C -0.062 4.062 17 C -0.168 4.168 18 C -0.091 4.091 19 C -0.034 4.034 20 F -0.126 7.126 21 C 0.116 3.884 22 N -0.403 5.403 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.253 0.747 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.183 0.817 34 H 0.249 0.751 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 12.097 -21.350 -0.042 24.539 hybrid contribution -0.546 0.721 -0.053 0.906 sum 11.552 -20.628 -0.095 23.643 Atomic orbital electron populations 1.70111 1.07984 1.27839 1.51703 1.26028 0.95729 1.03582 0.94794 0.85473 0.78186 0.77903 0.79317 1.18969 1.21316 1.18952 1.21672 0.93824 0.91992 1.50469 0.91378 1.18939 0.94453 0.92981 0.95031 1.21608 0.98467 0.91635 1.02311 1.21269 0.91904 0.85326 1.00848 1.45797 1.11288 1.04654 1.74051 1.18418 0.87769 0.83383 0.75505 1.90546 1.18212 1.84767 1.53178 1.19330 0.95088 0.90705 1.17168 1.21534 0.89938 1.01646 0.93058 1.21123 1.01688 0.90226 1.03809 1.21540 0.92428 0.99906 0.95270 1.17408 0.93086 0.77830 1.15079 1.91434 1.90582 1.36133 1.94488 1.17917 0.85657 0.91980 0.92887 1.42833 1.05145 1.19968 1.72358 0.92845 0.99008 0.99007 0.91154 0.91180 0.93002 0.93082 0.74687 0.82608 0.81029 0.81707 0.75141 0.76748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.10 -3.81 5.27 30.60 0.16 -3.65 16 11 C 0.13 4.48 5.67 86.38 0.49 4.97 16 12 N -0.71 -18.99 5.50 -466.35 -2.57 -21.56 16 13 C 0.56 16.41 7.74 86.67 0.67 17.08 16 14 O -0.58 -21.07 13.81 -4.05 -0.06 -21.13 16 15 C -0.21 -4.97 5.89 -19.99 -0.12 -5.09 16 16 C -0.04 -0.66 9.52 22.52 0.21 -0.44 16 17 C -0.15 -1.69 10.02 22.24 0.22 -1.47 16 18 C -0.07 -0.98 10.00 22.33 0.22 -0.75 16 19 C -0.01 -0.20 7.30 22.46 0.16 -0.04 16 20 F -0.15 -3.10 16.79 44.97 0.76 -2.35 16 21 C 0.23 5.37 6.77 38.72 0.26 5.63 16 22 N -0.86 -20.61 8.46 -50.78 -0.43 -21.04 16 23 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 24 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.41 8.18 6.54 -92.71 -0.61 7.57 16 31 H 0.16 1.59 6.45 -2.91 -0.02 1.57 16 32 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 33 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.41 11.26 6.08 -92.71 -0.56 10.70 16 35 H 0.40 8.05 8.55 -92.70 -0.79 7.26 16 Total: -1.00 -70.20 305.07 2.33 -67.87 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.82 Total: 21.26 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 3.13 Total: -11.72 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -2.71 Total: -99.24 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.06 Total: -21.13 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.76 Total: -2.35 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -70.20 2.33 -67.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156301058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.063 kcal (2) G-P(sol) polarization free energy of solvation -70.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds