Wall clock time and date at job start Mon Mar 30 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 116.99992 * 2 1 4 4 C 1.38756 * 120.05422 * 180.25108 * 3 2 1 5 5 C 1.38122 * 119.94114 * 180.25385 * 4 3 2 6 6 C 1.50695 * 119.96801 * 179.76809 * 5 4 3 7 7 N 1.46502 * 109.47152 * 269.72436 * 6 5 4 8 8 C 1.46494 * 119.99881 * 90.00677 * 7 6 5 9 9 C 1.36941 * 120.00052 * 270.00276 * 7 6 5 10 10 H 1.08003 * 120.00035 * 23.04038 * 9 7 6 11 11 C 1.38815 * 119.99709 * 203.04712 * 9 7 6 12 12 N 1.31614 * 120.00052 * 13.04739 * 11 9 7 13 13 Si 1.86801 * 119.99682 * 193.04590 * 11 9 7 14 14 H 1.48510 * 109.46895 * 60.00072 * 13 11 9 15 15 H 1.48497 * 109.47163 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47276 * 300.00029 * 13 11 9 17 17 C 1.38289 * 120.05502 * 359.49640 * 5 4 3 18 18 C 1.38242 * 120.11033 * 0.25133 * 17 5 4 19 19 N 1.48003 * 119.96776 * 179.97438 * 18 17 5 20 20 O 1.21799 * 120.00444 * 0.02562 * 19 18 17 21 21 O 1.21803 * 120.00135 * 179.97438 * 19 18 17 22 22 C 1.38161 * 120.05988 * 0.02562 * 18 17 5 23 23 H 1.09000 * 109.47459 * 59.99691 * 1 2 3 24 24 H 1.08999 * 109.47579 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47185 * 299.99711 * 1 2 3 26 26 H 1.07994 * 120.02575 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.47557 * 29.72652 * 6 5 4 28 28 H 1.09004 * 109.46958 * 149.73028 * 6 5 4 29 29 H 1.08996 * 109.47547 * 95.12552 * 8 7 6 30 30 H 1.09005 * 109.47267 * 215.12234 * 8 7 6 31 31 H 1.09000 * 109.47016 * 335.12296 * 8 7 6 32 32 H 0.97005 * 119.99390 * 180.02562 * 12 11 9 33 33 H 1.08005 * 119.94099 * 180.23091 * 17 5 4 34 34 H 1.07992 * 120.02923 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4316 1.2848 -0.0053 5 6 4.0562 2.5167 0.0001 6 6 5.5610 2.5977 -0.0004 7 7 6.0490 2.6242 1.3807 8 6 6.3613 1.3707 2.0714 9 6 6.2133 3.8209 2.0260 10 1 5.6620 4.6905 1.6998 11 6 7.0885 3.9162 3.0993 12 7 7.9448 2.9457 3.3383 13 14 7.0508 5.4219 4.2042 14 1 5.7073 5.5471 4.8245 15 1 8.0759 5.2801 5.2692 16 1 7.3386 6.6350 3.3977 17 6 3.3019 3.6758 0.0001 18 6 1.9213 3.6047 0.0001 19 7 1.1171 4.8472 0.0007 20 8 1.6716 5.9316 0.0007 21 8 -0.0994 4.7853 0.0002 22 6 1.2916 2.3749 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 4.0210 0.3799 -0.0098 27 1 5.9715 1.7284 -0.5142 28 1 5.8758 3.5059 -0.5144 29 1 7.4262 1.1589 1.9763 30 1 6.1020 1.4626 3.1262 31 1 5.7879 0.5578 1.6258 32 1 8.5561 3.0123 4.0885 33 1 3.7922 4.6381 0.0005 34 1 0.2131 2.3200 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164172443.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:29 Heat of formation + Delta-G solvation = 10.366425 kcal Electronic energy + Delta-G solvation = -20090.202999 eV Core-core repulsion = 16800.001314 eV Total energy + Delta-G solvation = -3290.201685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.00380 -40.26614 -37.95278 -36.37236 -35.55901 -32.51359 -31.19587 -30.20535 -27.83628 -26.35882 -26.35570 -25.64381 -22.32821 -22.13759 -20.79218 -18.90298 -18.49382 -17.35711 -17.01072 -16.86586 -16.31839 -16.01413 -15.95884 -15.03317 -14.06253 -13.87688 -13.71801 -13.23171 -12.76383 -12.52525 -12.19276 -11.74533 -11.58170 -11.42605 -11.38810 -11.29190 -10.97500 -10.96239 -10.85955 -10.76828 -10.49795 -10.10993 -10.04769 -9.16669 -8.67153 -8.48799 -6.94782 -5.85270 -3.34333 0.03102 1.18718 1.56781 1.60479 3.00028 3.34877 3.39974 3.41538 3.48779 4.42563 4.54169 4.61863 4.83311 4.89308 4.92580 5.14657 5.23982 5.28464 5.34100 5.46405 5.55100 5.79180 5.93070 6.02760 6.33427 6.39070 6.55512 6.59482 6.64154 7.08672 7.22825 7.59059 7.69896 7.83729 8.24208 9.08296 9.69561 10.16176 11.19117 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.006359 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.563387 B = 4402.387836 C = 5500.649637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.128 3.872 4 C -0.092 4.092 5 C -0.041 4.041 6 C 0.180 3.820 7 N -0.589 5.589 8 C 0.158 3.842 9 C -0.268 4.268 10 H 0.070 0.930 11 C 0.010 3.990 12 N -0.903 5.903 13 Si 0.905 3.095 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.279 1.279 17 C -0.068 4.068 18 C -0.010 4.010 19 N 0.032 4.968 20 O -0.156 6.156 21 O -0.177 6.177 22 C -0.170 4.170 23 H 0.057 0.943 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.145 0.855 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.000 1.000 32 H 0.255 0.745 33 H 0.153 0.847 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 -5.781 -7.866 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.081 3.919 4 C -0.112 4.112 5 C -0.046 4.046 6 C 0.052 3.948 7 N -0.309 5.309 8 C 0.014 3.986 9 C -0.397 4.397 10 H 0.088 0.912 11 C -0.190 4.190 12 N -0.547 5.547 13 Si 0.734 3.266 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.205 1.205 17 C -0.089 4.089 18 C -0.092 4.092 19 N 0.550 4.450 20 O -0.373 6.373 21 O -0.390 6.390 22 C -0.190 4.190 23 H 0.076 0.924 24 H 0.122 0.878 25 H 0.077 0.923 26 H 0.163 0.837 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.171 0.829 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.057 -6.613 -7.681 15.000 hybrid contribution -0.652 1.240 0.866 1.647 sum -11.709 -5.374 -6.815 14.575 Atomic orbital electron populations 1.23141 0.78080 1.04289 1.01711 1.86130 1.21630 1.25673 1.88763 1.18722 0.92082 0.83567 0.97481 1.20841 0.90800 0.99452 1.00095 1.21360 1.00789 0.89908 0.92551 1.19866 0.84904 1.01417 0.88637 1.43916 1.74745 1.03963 1.08290 1.20892 0.97929 0.84019 0.95749 1.19140 1.19798 0.88457 1.12314 0.91216 1.25010 0.95857 0.97822 1.00267 1.70054 1.21156 1.33124 1.30358 0.86330 0.77360 0.82489 0.80391 1.20973 1.21472 1.20531 1.20997 0.89685 1.01597 0.96572 1.20808 0.91544 0.83489 1.13407 1.43670 1.01207 1.02938 0.97141 1.94549 1.74224 1.15571 1.52997 1.94476 0.96237 1.94123 1.54147 1.20764 1.01536 0.89993 1.06755 0.92406 0.87828 0.92337 0.83737 0.92256 0.91249 0.94446 0.93936 0.98172 0.93464 0.82934 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.81 10.50 -19.43 -0.20 -4.01 16 3 C 0.13 1.79 6.69 -39.22 -0.26 1.52 16 4 C -0.09 -1.37 9.64 -39.43 -0.38 -1.75 16 5 C -0.04 -0.68 5.46 -104.65 -0.57 -1.25 16 6 C 0.18 3.30 5.77 -5.19 -0.03 3.27 16 7 N -0.59 -13.76 2.91 -182.50 -0.53 -14.29 16 8 C 0.16 3.66 8.98 59.84 0.54 4.19 16 9 C -0.27 -7.02 9.65 -15.06 -0.15 -7.17 16 10 H 0.07 1.79 7.86 -52.48 -0.41 1.38 16 11 C 0.01 0.26 5.10 -17.43 -0.09 0.17 16 12 N -0.90 -25.45 10.71 55.49 0.59 -24.86 16 13 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.07 -1.16 9.21 -39.56 -0.36 -1.52 16 18 C -0.01 -0.16 6.85 -79.98 -0.55 -0.70 16 19 N 0.03 0.57 4.45 33.95 0.15 0.72 16 20 O -0.16 -2.86 18.44 -29.46 -0.54 -3.41 16 21 O -0.18 -3.03 18.45 -29.46 -0.54 -3.57 16 22 C -0.17 -2.43 8.54 -39.43 -0.34 -2.76 16 23 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.47 7.66 -51.92 -0.40 0.07 16 26 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.06 0.96 8.01 -51.93 -0.42 0.55 16 28 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 29 H 0.04 0.93 7.34 -51.93 -0.38 0.55 16 30 H 0.04 1.07 7.35 -51.93 -0.38 0.69 16 31 H 0.00 -0.01 8.03 -51.93 -0.42 -0.42 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.15 2.62 7.61 -52.48 -0.40 2.22 16 34 H 0.15 1.82 5.85 -52.49 -0.31 1.51 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -29.78 301.92 -6.66 -36.43 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.91 Total: -3.29 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.20 Total: -4.82 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.22 Total: -38.43 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -1.29 Total: -10.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.78 -6.66 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164172443.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.801 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds