Wall clock time and date at job start Mon Mar 30 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46495 * 109.47474 * 2 1 4 4 C 1.46497 * 120.00250 * 264.86036 * 3 2 1 5 5 C 1.50695 * 109.47299 * 273.86169 * 4 3 2 6 6 H 1.07998 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99905 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00019 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47096 * 89.99808 * 9 7 5 11 11 H 1.48497 * 109.47379 * 209.99798 * 9 7 5 12 12 H 1.48500 * 109.47245 * 329.99946 * 9 7 5 13 13 C 1.34783 * 119.99895 * 84.86099 * 3 2 1 14 14 O 1.21550 * 120.00014 * 3.45314 * 13 3 2 15 15 C 1.47866 * 119.99902 * 183.45741 * 13 3 2 16 16 C 1.39492 * 120.09727 * 309.44928 * 15 13 3 17 17 C 1.38650 * 119.82770 * 180.02562 * 16 15 13 18 18 N 1.39701 * 119.99294 * 179.97438 * 17 16 15 19 19 C 1.38987 * 120.02102 * 0.02562 * 17 16 15 20 20 C 1.38419 * 120.19297 * 359.97438 * 19 17 16 21 21 F 1.35092 * 119.90884 * 179.97438 * 20 19 17 22 22 C 1.38261 * 120.17495 * 359.97438 * 20 19 17 23 23 H 1.09007 * 109.47476 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47176 * 299.99595 * 1 2 3 25 25 H 1.09003 * 109.47412 * 59.99838 * 1 2 3 26 26 H 1.09002 * 109.46904 * 239.99955 * 2 1 3 27 27 H 1.09006 * 109.47134 * 120.00601 * 2 1 3 28 28 H 1.09008 * 109.46859 * 33.86195 * 4 3 2 29 29 H 1.09001 * 109.46885 * 153.85698 * 4 3 2 30 30 H 0.97000 * 119.99891 * 180.02562 * 8 7 5 31 31 H 1.08008 * 120.08574 * 0.02562 * 16 15 13 32 32 H 0.97002 * 119.99975 * 0.02562 * 18 17 16 33 33 H 0.97004 * 119.99988 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.90391 * 179.97438 * 19 17 16 35 35 H 1.08001 * 120.00705 * 180.27526 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3697 2.0339 -1.2636 5 6 3.7977 1.7075 -1.6175 6 1 4.3849 1.0772 -0.9662 7 6 4.3544 2.2135 -2.7730 8 7 3.6392 2.9806 -3.5664 9 14 6.1247 1.8095 -3.2114 10 1 6.1616 0.5717 -4.0310 11 1 6.7120 2.9329 -3.9848 12 1 6.9081 1.6025 -1.9669 13 6 2.1444 2.0513 1.1626 14 8 1.9131 1.4903 2.2157 15 6 2.5641 3.4692 1.1568 16 6 3.6975 3.8603 0.4440 17 6 4.0863 5.1912 0.4428 18 7 5.2212 5.5866 -0.2695 19 6 3.3479 6.1319 1.1510 20 6 2.2231 5.7447 1.8587 21 9 1.5099 6.6638 2.5455 22 6 1.8275 4.4199 1.8645 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 1.7088 1.6764 -2.0533 29 1 2.2590 3.1131 -1.1580 30 1 4.0308 3.3363 -4.3794 31 1 4.2708 3.1283 -0.1057 32 1 5.7368 4.9302 -0.7635 33 1 5.4930 6.5178 -0.2706 34 1 3.6527 7.1680 1.1492 35 1 0.9469 4.1216 2.4139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165676235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:55 Heat of formation + Delta-G solvation = -59.630525 kcal Electronic energy + Delta-G solvation = -20527.309142 eV Core-core repulsion = 17246.444951 eV Total energy + Delta-G solvation = -3280.864191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.52384 -39.68959 -37.95546 -35.27489 -33.94014 -32.92727 -31.14403 -29.49282 -28.25969 -27.14535 -24.10749 -23.10772 -22.11842 -21.60985 -18.91293 -17.23628 -16.96669 -16.57827 -15.84752 -15.58020 -15.51214 -15.19128 -14.69613 -14.62148 -14.35824 -14.12400 -13.34863 -12.91957 -12.62088 -12.47447 -12.22349 -11.94043 -11.75815 -11.59274 -11.28993 -11.07989 -11.00281 -10.82792 -10.50229 -10.22954 -10.06404 -9.83137 -9.18117 -8.69632 -8.26033 -7.77723 -7.19785 -6.28935 -4.36140 1.46462 1.85954 3.10211 3.19818 3.21590 3.37601 3.79684 4.12701 4.17753 4.29700 4.83493 5.00980 5.12090 5.41537 5.58186 5.66301 5.80840 5.87725 5.89616 5.95006 6.25787 6.26012 6.41168 6.52942 6.63525 6.71353 6.76298 6.98979 7.18170 7.22584 7.50761 7.65055 7.80342 7.96599 8.09488 8.27216 8.68701 8.93314 9.28916 10.76478 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.009343 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.819271 B = 2996.159806 C = 4558.236098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.587 5.587 4 C 0.230 3.770 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.559 3.441 14 O -0.565 6.565 15 C -0.048 4.048 16 C -0.149 4.149 17 C 0.236 3.764 18 N -0.869 5.869 19 C -0.227 4.227 20 C 0.124 3.876 21 F -0.146 7.146 22 C -0.172 4.172 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.266 0.734 31 H 0.173 0.827 32 H 0.404 0.596 33 H 0.394 0.606 34 H 0.127 0.873 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.125 3.303 4.031 5.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.007 4.007 3 N -0.316 5.316 4 C 0.110 3.890 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.347 3.653 14 O -0.446 6.446 15 C -0.052 4.052 16 C -0.171 4.171 17 C 0.130 3.870 18 N -0.408 5.408 19 C -0.251 4.251 20 C 0.104 3.896 21 F -0.124 7.124 22 C -0.193 4.193 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.190 0.810 32 H 0.234 0.766 33 H 0.222 0.778 34 H 0.145 0.855 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.050 3.119 4.389 5.384 hybrid contribution 1.120 0.220 -0.688 1.333 sum 1.071 3.338 3.700 5.097 Atomic orbital electron populations 1.22117 0.96801 1.01320 1.02027 1.21256 0.93425 0.83429 1.02613 1.48192 1.62035 1.13230 1.08174 1.19623 0.95780 0.94310 0.79271 1.21450 0.97337 1.31839 1.07248 0.91839 1.24933 0.97999 0.94756 0.95836 1.69933 1.36605 1.32206 1.12875 0.86660 0.84563 0.78432 0.78894 1.20346 1.20955 1.19554 1.18239 0.77279 0.86027 0.83799 1.90689 1.52926 1.69609 1.31399 1.19371 0.95723 0.93223 0.96850 1.21880 0.99008 0.95668 1.00523 1.17329 0.87131 0.92342 0.90179 1.42391 1.29231 1.12043 1.57106 1.20428 0.98701 0.99832 1.06146 1.17006 0.91627 0.85938 0.94999 1.91444 1.77439 1.65868 1.77692 1.20685 1.03105 0.90845 1.04709 0.92324 0.92711 0.92591 0.90081 0.91184 0.94729 0.93396 0.92418 0.81043 0.76650 0.77833 0.85524 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.20 37.15 0.38 -2.23 16 2 C 0.12 2.12 6.12 -4.05 -0.02 2.10 16 3 N -0.59 -12.35 2.47 -176.17 -0.43 -12.79 16 4 C 0.23 5.27 4.65 -5.20 -0.02 5.25 16 5 C -0.54 -12.93 6.63 -34.44 -0.23 -13.16 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.88 -22.48 13.29 55.43 0.74 -21.74 16 9 Si 0.89 18.71 29.54 -169.99 -5.02 13.69 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 C 0.56 12.15 7.18 -12.32 -0.09 12.06 16 14 O -0.57 -13.22 16.69 5.32 0.09 -13.13 16 15 C -0.05 -0.97 4.82 -105.00 -0.51 -1.47 16 16 C -0.15 -2.93 7.49 -38.96 -0.29 -3.22 16 17 C 0.24 4.04 6.75 -83.84 -0.57 3.48 16 18 N -0.87 -12.36 9.09 32.38 0.29 -12.06 16 19 C -0.23 -3.66 9.86 -39.24 -0.39 -4.05 16 20 C 0.12 2.15 7.29 -39.51 -0.29 1.86 16 21 F -0.15 -2.41 17.26 2.25 0.04 -2.37 16 22 C -0.17 -3.21 9.71 -39.09 -0.38 -3.59 16 23 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 27 H 0.07 1.29 7.53 -51.93 -0.39 0.89 16 28 H 0.03 0.84 8.10 -51.92 -0.42 0.42 16 29 H 0.05 1.16 5.74 -51.93 -0.30 0.86 16 30 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 31 H 0.17 3.67 4.84 -52.48 -0.25 3.42 16 32 H 0.40 5.87 8.84 -40.82 -0.36 5.51 16 33 H 0.39 4.38 8.84 -40.82 -0.36 4.02 16 34 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -27.24 304.39 -6.37 -33.62 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.16 Total: 11.61 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.50 Total: -1.40 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.60 Total: -46.59 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.24 -6.37 -33.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165676235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.015 kcal (2) G-P(sol) polarization free energy of solvation -27.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds