Wall clock time and date at job start Mon Mar 30 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46495 * 109.47474 * 2 1 4 4 C 1.46497 * 120.00250 * 264.86036 * 3 2 1 5 5 C 1.50695 * 109.47299 * 273.86169 * 4 3 2 6 6 H 1.07998 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99905 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00019 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47096 * 89.99808 * 9 7 5 11 11 H 1.48497 * 109.47379 * 209.99798 * 9 7 5 12 12 H 1.48500 * 109.47245 * 329.99946 * 9 7 5 13 13 C 1.34783 * 119.99895 * 84.86099 * 3 2 1 14 14 O 1.21550 * 120.00014 * 3.45314 * 13 3 2 15 15 C 1.47866 * 119.99902 * 183.45741 * 13 3 2 16 16 C 1.39492 * 120.09727 * 309.44928 * 15 13 3 17 17 C 1.38650 * 119.82770 * 180.02562 * 16 15 13 18 18 N 1.39701 * 119.99294 * 179.97438 * 17 16 15 19 19 C 1.38987 * 120.02102 * 0.02562 * 17 16 15 20 20 C 1.38419 * 120.19297 * 359.97438 * 19 17 16 21 21 F 1.35092 * 119.90884 * 179.97438 * 20 19 17 22 22 C 1.38261 * 120.17495 * 359.97438 * 20 19 17 23 23 H 1.09007 * 109.47476 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47176 * 299.99595 * 1 2 3 25 25 H 1.09003 * 109.47412 * 59.99838 * 1 2 3 26 26 H 1.09002 * 109.46904 * 239.99955 * 2 1 3 27 27 H 1.09006 * 109.47134 * 120.00601 * 2 1 3 28 28 H 1.09008 * 109.46859 * 33.86195 * 4 3 2 29 29 H 1.09001 * 109.46885 * 153.85698 * 4 3 2 30 30 H 0.97000 * 119.99891 * 180.02562 * 8 7 5 31 31 H 1.08008 * 120.08574 * 0.02562 * 16 15 13 32 32 H 0.97002 * 119.99975 * 0.02562 * 18 17 16 33 33 H 0.97004 * 119.99988 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.90391 * 179.97438 * 19 17 16 35 35 H 1.08001 * 120.00705 * 180.27526 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3697 2.0339 -1.2636 5 6 3.7977 1.7075 -1.6175 6 1 4.3849 1.0772 -0.9662 7 6 4.3544 2.2135 -2.7730 8 7 3.6392 2.9806 -3.5664 9 14 6.1247 1.8095 -3.2114 10 1 6.1616 0.5717 -4.0310 11 1 6.7120 2.9329 -3.9848 12 1 6.9081 1.6025 -1.9669 13 6 2.1444 2.0513 1.1626 14 8 1.9131 1.4903 2.2157 15 6 2.5641 3.4692 1.1568 16 6 3.6975 3.8603 0.4440 17 6 4.0863 5.1912 0.4428 18 7 5.2212 5.5866 -0.2695 19 6 3.3479 6.1319 1.1510 20 6 2.2231 5.7447 1.8587 21 9 1.5099 6.6638 2.5455 22 6 1.8275 4.4199 1.8645 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 1.7088 1.6764 -2.0533 29 1 2.2590 3.1131 -1.1580 30 1 4.0308 3.3363 -4.3794 31 1 4.2708 3.1283 -0.1057 32 1 5.7368 4.9302 -0.7635 33 1 5.4930 6.5178 -0.2706 34 1 3.6527 7.1680 1.1492 35 1 0.9469 4.1216 2.4139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165676235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:54 Heat of formation + Delta-G solvation = -75.524292 kcal Electronic energy + Delta-G solvation = -20527.998348 eV Core-core repulsion = 17246.444951 eV Total energy + Delta-G solvation = -3281.553396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.87374 -41.28618 -39.43691 -37.00111 -35.28358 -34.73117 -32.65475 -30.95776 -29.64712 -28.94197 -25.60099 -24.92439 -23.56227 -23.02700 -20.45835 -18.86252 -18.42651 -18.26561 -17.38798 -17.12551 -16.98917 -16.56098 -16.32274 -15.99239 -15.83340 -15.71049 -14.82109 -14.44167 -14.30708 -13.91545 -13.77829 -13.52118 -13.30350 -13.12863 -12.73316 -12.64826 -12.61913 -12.52142 -12.08637 -11.80227 -11.68859 -11.45511 -10.87661 -10.56440 -9.71135 -9.50017 -8.51628 -8.15850 -6.29203 0.01425 0.43775 1.42622 1.48424 1.55827 1.73468 2.21442 2.43826 2.78429 2.86740 3.12767 3.45677 3.61620 4.06002 4.17288 4.27474 4.39639 4.42197 4.54075 4.57858 4.81501 4.84907 4.96959 5.05760 5.13139 5.21848 5.27917 5.33469 5.51028 5.69326 5.83338 5.84622 6.08645 6.51398 6.51933 6.81104 7.01115 7.21474 7.40293 8.89340 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.009343 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.819271 B = 2996.159806 C = 4558.236098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.108 3.892 3 N -0.588 5.588 4 C 0.247 3.753 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.035 3.965 8 N -0.908 5.908 9 Si 0.946 3.054 10 H -0.283 1.283 11 H -0.277 1.277 12 H -0.266 1.266 13 C 0.554 3.446 14 O -0.588 6.588 15 C -0.067 4.067 16 C -0.166 4.166 17 C 0.238 3.762 18 N -0.856 5.856 19 C -0.215 4.215 20 C 0.128 3.872 21 F -0.139 7.139 22 C -0.184 4.184 23 H 0.090 0.910 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.018 0.982 29 H 0.034 0.966 30 H 0.268 0.732 31 H 0.153 0.847 32 H 0.404 0.596 33 H 0.412 0.588 34 H 0.161 0.839 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 4.219 3.898 5.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.317 5.317 4 C 0.127 3.873 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.167 4.167 8 N -0.546 5.546 9 Si 0.771 3.229 10 H -0.209 1.209 11 H -0.202 1.202 12 H -0.190 1.190 13 C 0.343 3.657 14 O -0.471 6.471 15 C -0.070 4.070 16 C -0.188 4.188 17 C 0.131 3.869 18 N -0.395 5.395 19 C -0.239 4.239 20 C 0.109 3.891 21 F -0.118 7.118 22 C -0.205 4.205 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.170 0.830 32 H 0.233 0.767 33 H 0.242 0.758 34 H 0.179 0.821 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.840 4.046 4.248 5.926 hybrid contribution 0.842 -0.044 -0.635 1.055 sum 1.682 4.003 3.613 5.648 Atomic orbital electron populations 1.22027 0.94733 1.03206 1.01222 1.21470 0.95165 0.82088 1.02690 1.48244 1.61854 1.14165 1.07468 1.19285 0.95127 0.93515 0.79413 1.21477 0.97598 1.31624 1.07253 0.92688 1.25500 1.01213 0.94406 0.95535 1.70025 1.38149 1.33114 1.13282 0.85742 0.80537 0.77984 0.78589 1.20868 1.20189 1.18989 1.18537 0.76862 0.86776 0.83508 1.90655 1.54195 1.70339 1.31955 1.19332 0.96680 0.92707 0.98321 1.21685 0.99186 0.96651 1.01317 1.17354 0.87838 0.91532 0.90196 1.42358 1.28031 1.13152 1.55989 1.20694 0.97531 1.01190 1.04489 1.17020 0.91858 0.85445 0.94822 1.91463 1.77365 1.65422 1.77526 1.20717 1.03323 0.91477 1.05022 0.89114 0.93908 0.92859 0.89645 0.91360 0.96414 0.94773 0.92306 0.82977 0.76671 0.75756 0.82105 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 10.20 71.98 0.73 -4.06 16 2 C 0.11 3.98 6.12 86.38 0.53 4.50 16 3 N -0.59 -25.26 2.47 -829.56 -2.05 -27.31 16 4 C 0.25 11.56 4.65 85.63 0.40 11.96 16 5 C -0.54 -26.08 6.63 25.60 0.17 -25.91 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.04 1.70 5.46 84.66 0.46 2.16 16 8 N -0.91 -46.23 13.29 21.45 0.28 -45.95 16 9 Si 0.95 37.84 29.54 68.60 2.03 39.86 16 10 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 12 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 13 C 0.55 24.65 7.18 86.79 0.62 25.27 16 14 O -0.59 -28.09 16.69 -3.87 -0.06 -28.16 16 15 C -0.07 -2.74 4.82 -20.11 -0.10 -2.83 16 16 C -0.17 -6.53 7.49 22.67 0.17 -6.36 16 17 C 0.24 7.78 6.75 38.17 0.26 8.04 16 18 N -0.86 -22.39 9.09 -51.47 -0.47 -22.86 16 19 C -0.22 -6.38 9.86 22.49 0.22 -6.16 16 20 C 0.13 4.23 7.29 22.32 0.16 4.39 16 21 F -0.14 -4.31 17.26 44.97 0.78 -3.54 16 22 C -0.18 -6.83 9.71 22.59 0.22 -6.61 16 23 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 3.03 8.03 -2.39 -0.02 3.01 16 27 H 0.07 2.52 7.53 -2.38 -0.02 2.51 16 28 H 0.02 0.88 8.10 -2.38 -0.02 0.86 16 29 H 0.03 1.70 5.74 -2.39 -0.01 1.69 16 30 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 31 H 0.15 6.60 4.84 -2.91 -0.01 6.59 16 32 H 0.40 10.99 8.84 -92.71 -0.82 10.17 16 33 H 0.41 7.83 8.84 -92.71 -0.82 7.01 16 34 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -57.52 304.39 3.86 -53.66 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.50 Total: 29.89 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 3.85 Total: 4.39 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -2.23 Total: -96.11 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.16 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.54 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.86 kcal Total: -57.52 3.86 -53.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165676235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.860 kcal (2) G-P(sol) polarization free energy of solvation -57.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds