Wall clock time and date at job start Mon Mar 30 2020 05:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46973 * 2 1 4 4 C 1.50697 * 109.47209 * 120.00252 * 2 1 3 5 5 H 1.08001 * 119.99875 * 119.99730 * 4 2 1 6 6 C 1.37872 * 120.00047 * 299.99551 * 4 2 1 7 7 N 1.31523 * 120.00016 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00214 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47347 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47623 * 300.00287 * 8 6 4 11 11 H 1.48506 * 109.46817 * 60.00565 * 8 6 4 12 12 N 1.46509 * 109.46772 * 240.00193 * 2 1 3 13 13 C 1.46498 * 119.99939 * 299.99972 * 12 2 1 14 14 C 1.34773 * 119.99867 * 119.99850 * 12 2 1 15 15 O 1.21555 * 120.00002 * 355.47524 * 14 12 2 16 16 C 1.47872 * 119.99659 * 175.46792 * 14 12 2 17 17 C 1.39486 * 120.09752 * 41.49248 * 16 14 12 18 18 C 1.38657 * 119.82563 * 179.97438 * 17 16 14 19 19 N 1.39694 * 119.99085 * 179.97438 * 18 17 16 20 20 C 1.38986 * 120.01857 * 0.02562 * 18 17 16 21 21 C 1.38411 * 120.19857 * 0.02562 * 20 18 17 22 22 F 1.35094 * 119.91357 * 179.97438 * 21 20 18 23 23 C 1.38270 * 120.17349 * 359.70605 * 21 20 18 24 24 H 1.09001 * 109.46653 * 299.99717 * 1 2 3 25 25 H 1.08993 * 109.46969 * 59.99871 * 1 2 3 26 26 H 1.08993 * 109.46973 * 180.02562 * 1 2 3 27 27 H 0.96993 * 119.99898 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47008 * 95.16770 * 13 12 2 29 29 H 1.09001 * 109.46995 * 215.17216 * 13 12 2 30 30 H 1.09001 * 109.47166 * 335.16589 * 13 12 2 31 31 H 1.07995 * 120.09041 * 359.95622 * 17 16 14 32 32 H 0.97006 * 120.00078 * 0.02562 * 19 18 17 33 33 H 0.96998 * 120.00244 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.89790 * 180.02562 * 20 18 17 35 35 H 1.08000 * 120.01335 * 180.27247 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8297 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 1.8262 -0.4207 5.2204 10 1 1.8260 -2.5203 4.0077 11 1 3.8066 -1.1209 4.0080 12 7 2.0184 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0192 1.1494 -1.9344 16 6 3.3683 -0.7586 -3.2380 17 6 2.5960 -1.6850 -3.9385 18 6 3.1408 -2.3594 -5.0206 19 7 2.3706 -3.2883 -5.7243 20 6 4.4535 -2.1122 -5.4047 21 6 5.2211 -1.1939 -4.7095 22 9 6.4965 -0.9584 -5.0875 23 6 4.6841 -0.5127 -3.6327 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.7084 1.1608 3.4844 28 1 0.7895 -2.1447 -2.0761 29 1 2.5004 -2.6048 -1.9050 30 1 1.4400 -2.5735 -0.4757 31 1 1.5763 -1.8768 -3.6388 32 1 1.4545 -3.4613 -5.4562 33 1 2.7515 -3.7599 -6.4816 34 1 4.8758 -2.6382 -6.2480 35 1 5.2840 0.2065 -3.0948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165965646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:33 Heat of formation + Delta-G solvation = -47.912727 kcal Electronic energy + Delta-G solvation = -20045.254830 eV Core-core repulsion = 16764.898761 eV Total energy + Delta-G solvation = -3280.356069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.85286 -39.94912 -38.20330 -35.43820 -34.38117 -32.96627 -30.94996 -29.04675 -28.68777 -26.30254 -25.23962 -23.95061 -22.35869 -21.00928 -19.00430 -17.46001 -17.42872 -16.51562 -16.20818 -15.81401 -15.52611 -15.46336 -15.15205 -14.93021 -14.34333 -14.08851 -13.10053 -13.00750 -12.91081 -12.54219 -12.45989 -11.88353 -11.66170 -11.57160 -11.23265 -11.05281 -10.86387 -10.75865 -10.48942 -10.27864 -10.17771 -9.24832 -9.10709 -8.73512 -8.43760 -7.76086 -7.61978 -6.08542 -4.16922 0.99550 1.39608 3.21948 3.27809 3.33069 3.35073 3.52055 3.71728 4.02672 4.37204 4.44353 4.76665 5.00644 5.12851 5.22793 5.34014 5.49025 5.75711 5.80950 5.90467 6.07477 6.15340 6.35744 6.41974 6.71647 6.74428 6.81896 7.03924 7.23501 7.38433 7.49811 7.53258 7.69440 7.99364 8.16809 8.46313 8.79043 8.97610 9.49506 10.96784 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.004994 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.797094 B = 5605.310823 C = 5879.609225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.581 5.581 13 C 0.079 3.921 14 C 0.544 3.456 15 O -0.541 6.541 16 C -0.036 4.036 17 C -0.181 4.181 18 C 0.234 3.766 19 N -0.874 5.874 20 C -0.225 4.225 21 C 0.139 3.861 22 F -0.139 7.139 23 C -0.162 4.162 24 H 0.094 0.906 25 H 0.012 0.988 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.402 0.598 33 H 0.399 0.601 34 H 0.132 0.868 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -9.637 -14.901 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.064 4.064 14 C 0.330 3.670 15 O -0.420 6.420 16 C -0.040 4.040 17 C -0.204 4.204 18 C 0.129 3.871 19 N -0.413 5.413 20 C -0.249 4.249 21 C 0.119 3.881 22 F -0.117 7.117 23 C -0.183 4.183 24 H 0.113 0.887 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.157 0.843 32 H 0.230 0.770 33 H 0.227 0.773 34 H 0.150 0.850 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.867 -8.854 -14.618 17.191 hybrid contribution 0.319 -0.827 0.557 1.047 sum 2.185 -9.681 -14.061 17.210 Atomic orbital electron populations 1.22081 0.97986 0.99433 1.00920 1.19012 0.91054 0.94587 0.79628 0.91743 1.21275 1.32038 1.13141 0.90223 0.92195 1.24887 0.94892 0.94965 0.98956 1.69871 1.36159 1.22536 1.23927 0.86538 0.79284 0.79534 0.81928 1.21153 1.20237 1.20203 1.48180 1.48071 1.11689 1.23203 1.21881 0.98785 0.83358 1.02412 1.18186 0.79667 0.86849 0.82288 1.90757 1.60925 1.15020 1.75339 1.19739 0.93546 0.95050 0.95701 1.21091 1.01697 1.00058 0.97589 1.17252 0.89866 0.89283 0.90656 1.42401 1.16036 1.46334 1.36568 1.20460 0.94243 1.05097 1.05082 1.17134 0.79086 0.96868 0.95038 1.91489 1.36117 1.93457 1.90685 1.20915 0.95960 1.03046 0.98420 0.88748 0.96914 0.95128 0.92579 0.93861 0.92122 0.89934 0.84251 0.76967 0.77319 0.85025 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.26 6.54 2.63 -69.08 -0.18 6.36 16 3 H 0.06 1.90 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -14.14 7.95 -34.44 -0.27 -14.41 16 5 H 0.06 1.57 7.42 -52.49 -0.39 1.19 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.58 -12.43 2.75 -176.36 -0.49 -12.91 16 13 C 0.08 1.31 7.87 59.85 0.47 1.78 16 14 C 0.54 11.68 7.33 -12.32 -0.09 11.59 16 15 O -0.54 -13.76 16.28 5.32 0.09 -13.67 16 16 C -0.04 -0.61 5.15 -105.00 -0.54 -1.15 16 17 C -0.18 -2.43 7.46 -38.96 -0.29 -2.72 16 18 C 0.23 2.61 6.75 -83.84 -0.57 2.04 16 19 N -0.87 -6.31 9.09 32.38 0.29 -6.02 16 20 C -0.22 -2.62 9.86 -39.24 -0.39 -3.00 16 21 C 0.14 1.94 7.29 -39.51 -0.29 1.65 16 22 F -0.14 -1.95 17.26 2.25 0.04 -1.91 16 23 C -0.16 -2.62 9.62 -39.08 -0.38 -2.99 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.04 0.60 6.85 -51.93 -0.36 0.25 16 29 H 0.06 0.89 5.99 -51.93 -0.31 0.58 16 30 H 0.08 1.45 7.10 -51.93 -0.37 1.08 16 31 H 0.14 1.70 5.52 -52.49 -0.29 1.41 16 32 H 0.40 2.30 8.84 -40.82 -0.36 1.94 16 33 H 0.40 2.04 8.84 -40.82 -0.36 1.68 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -31.32 297.52 -6.17 -37.49 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.91 Total: 3.23 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.28 Total: -2.29 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.44 Total: -43.20 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.32 -6.17 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165965646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.418 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds