Wall clock time and date at job start Mon Mar 30 2020 05:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46973 * 2 1 4 4 C 1.50697 * 109.47209 * 120.00252 * 2 1 3 5 5 H 1.08001 * 119.99875 * 119.99730 * 4 2 1 6 6 C 1.37872 * 120.00047 * 299.99551 * 4 2 1 7 7 N 1.31523 * 120.00016 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00214 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47347 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47623 * 300.00287 * 8 6 4 11 11 H 1.48506 * 109.46817 * 60.00565 * 8 6 4 12 12 N 1.46509 * 109.46772 * 240.00193 * 2 1 3 13 13 C 1.46498 * 119.99939 * 299.99972 * 12 2 1 14 14 C 1.34773 * 119.99867 * 119.99850 * 12 2 1 15 15 O 1.21555 * 120.00002 * 355.47524 * 14 12 2 16 16 C 1.47872 * 119.99659 * 175.46792 * 14 12 2 17 17 C 1.39486 * 120.09752 * 41.49248 * 16 14 12 18 18 C 1.38657 * 119.82563 * 179.97438 * 17 16 14 19 19 N 1.39694 * 119.99085 * 179.97438 * 18 17 16 20 20 C 1.38986 * 120.01857 * 0.02562 * 18 17 16 21 21 C 1.38411 * 120.19857 * 0.02562 * 20 18 17 22 22 F 1.35094 * 119.91357 * 179.97438 * 21 20 18 23 23 C 1.38270 * 120.17349 * 359.70605 * 21 20 18 24 24 H 1.09001 * 109.46653 * 299.99717 * 1 2 3 25 25 H 1.08993 * 109.46969 * 59.99871 * 1 2 3 26 26 H 1.08993 * 109.46973 * 180.02562 * 1 2 3 27 27 H 0.96993 * 119.99898 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47008 * 95.16770 * 13 12 2 29 29 H 1.09001 * 109.46995 * 215.17216 * 13 12 2 30 30 H 1.09001 * 109.47166 * 335.16589 * 13 12 2 31 31 H 1.07995 * 120.09041 * 359.95622 * 17 16 14 32 32 H 0.97006 * 120.00078 * 0.02562 * 19 18 17 33 33 H 0.96998 * 120.00244 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.89790 * 180.02562 * 20 18 17 35 35 H 1.08000 * 120.01335 * 180.27247 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8297 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 1.8262 -0.4207 5.2204 10 1 1.8260 -2.5203 4.0077 11 1 3.8066 -1.1209 4.0080 12 7 2.0184 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0192 1.1494 -1.9344 16 6 3.3683 -0.7586 -3.2380 17 6 2.5960 -1.6850 -3.9385 18 6 3.1408 -2.3594 -5.0206 19 7 2.3706 -3.2883 -5.7243 20 6 4.4535 -2.1122 -5.4047 21 6 5.2211 -1.1939 -4.7095 22 9 6.4965 -0.9584 -5.0875 23 6 4.6841 -0.5127 -3.6327 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.7084 1.1608 3.4844 28 1 0.7895 -2.1447 -2.0761 29 1 2.5004 -2.6048 -1.9050 30 1 1.4400 -2.5735 -0.4757 31 1 1.5763 -1.8768 -3.6388 32 1 1.4545 -3.4613 -5.4562 33 1 2.7515 -3.7599 -6.4816 34 1 4.8758 -2.6382 -6.2480 35 1 5.2840 0.2065 -3.0948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165965646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:33 Heat of formation + Delta-G solvation = -69.399896 kcal Electronic energy + Delta-G solvation = -20046.186583 eV Core-core repulsion = 16764.898761 eV Total energy + Delta-G solvation = -3281.287823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.93770 -41.34591 -39.51760 -37.23392 -35.37910 -34.82715 -32.38958 -30.66295 -29.69359 -27.76399 -27.30211 -25.31805 -23.45028 -22.59342 -20.51940 -18.87241 -18.38036 -18.33817 -17.50209 -17.23976 -16.94170 -16.60965 -16.37586 -16.16490 -15.86777 -15.57176 -14.78386 -14.39962 -14.13818 -13.98897 -13.76941 -13.57246 -13.18422 -12.95427 -12.79108 -12.72593 -12.69631 -12.41417 -12.19041 -12.11719 -11.55172 -11.22071 -10.82782 -10.51147 -9.84475 -9.39466 -8.59676 -8.14720 -6.31569 -0.13415 0.31621 1.42356 1.45067 1.52270 1.75904 2.20857 2.44887 2.66202 2.83080 3.13428 3.39145 3.51335 3.98298 4.06388 4.22533 4.41891 4.48543 4.66201 4.72139 4.81017 4.90745 4.98622 5.04964 5.07656 5.10709 5.28184 5.47112 5.58685 5.65705 5.70396 6.02596 6.15010 6.48078 6.72540 6.75263 7.01419 7.23372 7.42263 8.89716 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.004994 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.797094 B = 5605.310823 C = 5879.609225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.259 3.741 3 H 0.008 0.992 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.283 1.283 10 H -0.260 1.260 11 H -0.279 1.279 12 N -0.586 5.586 13 C 0.076 3.924 14 C 0.536 3.464 15 O -0.599 6.599 16 C -0.054 4.054 17 C -0.176 4.176 18 C 0.253 3.747 19 N -0.851 5.851 20 C -0.210 4.210 21 C 0.136 3.864 22 F -0.141 7.141 23 C -0.188 4.188 24 H 0.068 0.932 25 H 0.021 0.979 26 H 0.051 0.949 27 H 0.265 0.735 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.414 0.586 33 H 0.414 0.586 34 H 0.166 0.834 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -13.137 -16.787 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.026 0.974 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.790 3.210 9 H -0.209 1.209 10 H -0.185 1.185 11 H -0.205 1.205 12 N -0.315 5.315 13 C -0.066 4.066 14 C 0.325 3.675 15 O -0.482 6.482 16 C -0.058 4.058 17 C -0.199 4.199 18 C 0.144 3.856 19 N -0.391 5.391 20 C -0.234 4.234 21 C 0.116 3.884 22 F -0.120 7.120 23 C -0.210 4.210 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.173 0.827 32 H 0.244 0.756 33 H 0.245 0.755 34 H 0.184 0.816 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.384 -12.436 -16.551 20.748 hybrid contribution 0.455 0.222 1.021 1.139 sum 1.838 -12.215 -15.530 19.843 Atomic orbital electron populations 1.21857 0.96577 1.00395 1.00063 1.18639 0.92079 0.92210 0.81322 0.97372 1.21526 1.32148 1.13225 0.91024 0.92019 1.25729 0.94999 0.95618 1.01986 1.70019 1.37119 1.23806 1.24559 0.85500 0.78305 0.79080 0.78070 1.20866 1.18481 1.20474 1.48154 1.47948 1.13486 1.21903 1.22161 1.01113 0.80377 1.02920 1.18939 0.78877 0.86470 0.83254 1.90707 1.62754 1.17718 1.77041 1.19280 0.94240 0.97012 0.95255 1.21131 1.01886 0.99104 0.97816 1.17176 0.89839 0.88874 0.89671 1.42384 1.16228 1.44464 1.35991 1.20770 0.93989 1.03607 1.05006 1.17140 0.79252 0.97268 0.94701 1.91482 1.36331 1.93582 1.90580 1.20772 0.96057 1.04150 1.00052 0.91312 0.96018 0.93027 0.92569 0.90380 0.89821 0.90866 0.82732 0.75567 0.75455 0.81605 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.97 71.98 0.65 -5.62 16 2 C 0.26 13.70 2.63 44.25 0.12 13.82 16 3 H 0.01 0.53 6.91 -2.39 -0.02 0.51 16 4 C -0.54 -29.55 7.95 25.60 0.20 -29.35 16 5 H 0.06 3.26 7.42 -2.91 -0.02 3.24 16 6 C 0.02 0.91 5.30 84.65 0.45 1.35 16 7 N -0.92 -52.95 11.32 21.45 0.24 -52.70 16 8 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.59 -25.45 2.75 -830.17 -2.29 -27.74 16 13 C 0.08 2.37 7.87 127.77 1.01 3.38 16 14 C 0.54 23.98 7.33 86.79 0.64 24.62 16 15 O -0.60 -32.82 16.28 -3.89 -0.06 -32.89 16 16 C -0.05 -1.83 5.15 -20.11 -0.10 -1.93 16 17 C -0.18 -4.23 7.46 22.67 0.17 -4.06 16 18 C 0.25 4.51 6.75 38.17 0.26 4.77 16 19 N -0.85 -7.53 9.09 -51.47 -0.47 -7.99 16 20 C -0.21 -4.05 9.86 22.49 0.22 -3.83 16 21 C 0.14 3.63 7.29 22.32 0.16 3.79 16 22 F -0.14 -3.81 17.26 44.97 0.78 -3.03 16 23 C -0.19 -6.25 9.62 22.59 0.22 -6.03 16 24 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 2.20 7.67 -2.39 -0.02 2.18 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.08 1.89 6.85 -2.39 -0.02 1.88 16 29 H 0.08 2.23 5.99 -2.39 -0.01 2.21 16 30 H 0.07 2.44 7.10 -2.39 -0.02 2.42 16 31 H 0.16 3.16 5.52 -2.91 -0.02 3.15 16 32 H 0.41 2.38 8.84 -92.70 -0.82 1.56 16 33 H 0.41 1.73 8.84 -92.71 -0.82 0.91 16 34 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -73.02 297.52 3.72 -69.30 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -0.49 Total: 9.08 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 3.98 Total: 0.91 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -2.51 Total: -88.43 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.06 Total: -32.89 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.78 Total: -3.03 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -73.02 3.72 -69.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165965646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.104 kcal (2) G-P(sol) polarization free energy of solvation -73.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds