Wall clock time and date at job start Mon Mar 30 2020 05:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46342 * 2 1 4 4 C 1.50698 * 109.47118 * 240.00721 * 2 1 3 5 5 H 1.08008 * 119.99729 * 239.99590 * 4 2 1 6 6 C 1.37870 * 120.00588 * 59.99757 * 4 2 1 7 7 N 1.31511 * 119.99853 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00251 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46877 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47290 * 119.99610 * 8 6 4 11 11 H 1.48507 * 109.46821 * 239.99808 * 8 6 4 12 12 N 1.46498 * 109.47115 * 120.00169 * 2 1 3 13 13 C 1.46497 * 120.00107 * 60.00253 * 12 2 1 14 14 C 1.34776 * 119.99576 * 240.00372 * 12 2 1 15 15 O 1.21551 * 120.00457 * 6.97441 * 14 12 2 16 16 C 1.47868 * 119.99651 * 186.97594 * 14 12 2 17 17 C 1.39492 * 120.09653 * 200.60713 * 16 14 12 18 18 C 1.38657 * 119.82448 * 180.02562 * 17 16 14 19 19 N 1.39707 * 119.99226 * 179.97438 * 18 17 16 20 20 C 1.38987 * 120.02123 * 0.02562 * 18 17 16 21 21 C 1.38409 * 120.19643 * 0.02562 * 20 18 17 22 22 F 1.35102 * 119.91332 * 180.02562 * 21 20 18 23 23 C 1.38273 * 120.17467 * 359.71912 * 21 20 18 24 24 H 1.09005 * 109.47013 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47206 * 60.00210 * 1 2 3 26 26 H 1.08992 * 109.47478 * 299.99441 * 1 2 3 27 27 H 0.97002 * 120.00241 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.46766 * 86.31038 * 13 12 2 29 29 H 1.09002 * 109.46816 * 206.31201 * 13 12 2 30 30 H 1.09001 * 109.46934 * 326.31376 * 13 12 2 31 31 H 1.07999 * 120.08994 * 359.97438 * 17 16 14 32 32 H 0.97002 * 119.99348 * 359.97438 * 19 18 17 33 33 H 0.96997 * 120.00130 * 180.02562 * 19 18 17 34 34 H 1.07998 * 119.90058 * 179.97438 * 20 18 17 35 35 H 1.07995 * 120.01031 * 180.27954 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1662 -1.5865 -4.8161 11 1 3.1466 -0.1869 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0833 15 8 2.9828 1.1586 1.9593 16 6 3.4125 -0.7697 3.2075 17 6 3.8406 -0.0801 4.3420 18 6 4.4212 -0.7741 5.3926 19 7 4.8518 -0.0870 6.5303 20 6 4.5759 -2.1531 5.3140 21 6 4.1524 -2.8381 4.1883 22 9 4.3051 -4.1786 4.1181 23 6 3.5676 -2.1548 3.1380 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5137 0.8899 27 1 0.7081 1.1610 -3.4844 28 1 2.3794 -2.7375 0.9163 29 1 1.6878 -2.3018 2.4975 30 1 0.6629 -2.2837 1.0423 31 1 3.7210 0.9916 4.4015 32 1 4.7448 0.8756 6.5848 33 1 5.2582 -0.5723 7.2652 34 1 5.0288 -2.6917 6.1333 35 1 3.2340 -2.6925 2.2629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165965776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:36 Heat of formation + Delta-G solvation = -53.306354 kcal Electronic energy + Delta-G solvation = -20081.033890 eV Core-core repulsion = 16800.443936 eV Total energy + Delta-G solvation = -3280.589954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -49.88202 -41.40458 -39.51232 -37.27110 -35.74432 -34.59990 -32.14246 -31.11503 -29.57647 -27.90049 -27.30902 -25.31993 -23.28389 -22.69550 -20.60974 -18.85479 -18.46680 -18.17032 -17.61814 -17.19816 -16.97474 -16.66037 -16.19021 -16.12113 -15.88646 -15.59407 -14.78299 -14.50359 -14.35522 -13.89088 -13.73480 -13.51319 -13.28124 -12.99575 -12.84589 -12.75174 -12.68043 -12.23811 -12.12086 -12.01872 -11.43834 -11.17076 -10.78620 -10.51988 -9.90850 -9.37574 -8.60712 -8.14939 -6.31731 -0.20492 0.32164 1.41969 1.43641 1.55149 1.85105 2.20740 2.44835 2.72319 2.82163 3.13205 3.31522 3.56034 3.98735 4.06969 4.21057 4.37725 4.49215 4.63127 4.71668 4.76391 4.88588 4.95845 5.02819 5.04067 5.10908 5.27858 5.45404 5.58398 5.65282 5.74134 6.01787 6.13906 6.43662 6.72477 6.75411 6.95981 7.23270 7.42263 8.89900 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.005140 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.002916 B = 5446.402910 C = 5976.277528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.012 0.988 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.589 5.589 13 C 0.070 3.930 14 C 0.536 3.464 15 O -0.595 6.595 16 C -0.063 4.063 17 C -0.163 4.163 18 C 0.245 3.755 19 N -0.855 5.855 20 C -0.207 4.207 21 C 0.136 3.864 22 F -0.136 7.136 23 C -0.208 4.208 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.265 0.735 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.410 0.590 33 H 0.415 0.585 34 H 0.166 0.834 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.582 -8.287 17.675 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.030 0.970 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.318 5.318 13 C -0.072 4.072 14 C 0.325 3.675 15 O -0.478 6.478 16 C -0.067 4.067 17 C -0.187 4.187 18 C 0.137 3.863 19 N -0.395 5.395 20 C -0.231 4.231 21 C 0.116 3.884 22 F -0.115 7.115 23 C -0.229 4.229 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.240 0.760 33 H 0.246 0.754 34 H 0.183 0.817 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.561 -7.637 17.442 19.836 hybrid contribution 0.232 0.074 -0.976 1.006 sum 5.793 -7.563 16.465 19.023 Atomic orbital electron populations 1.21885 0.96941 1.00289 1.00085 1.18639 0.91941 0.92298 0.81269 0.97006 1.21584 1.32041 1.13146 0.90972 0.92001 1.25729 0.95008 0.95617 1.01990 1.70027 1.37211 1.23882 1.24443 0.85380 0.78222 0.78473 0.78774 1.18918 1.19910 1.21117 1.48126 1.48212 1.13385 1.22068 1.22452 1.01664 0.80673 1.02362 1.18888 0.79177 0.86538 0.82865 1.90679 1.63930 1.16721 1.76512 1.19343 0.99991 0.93251 0.94066 1.20716 1.04408 1.00474 0.93093 1.17183 0.91096 0.90504 0.87483 1.42394 1.68914 1.10932 1.17308 1.20808 1.09304 0.92973 1.00044 1.17178 0.98942 0.77082 0.95185 1.91505 1.93567 1.29781 1.96639 1.22014 1.05456 0.93655 1.01745 0.93176 0.91126 0.96113 0.92572 0.91562 0.88230 0.90781 0.85303 0.75959 0.75412 0.81667 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.94 71.98 0.64 -5.93 16 2 C 0.26 13.89 2.63 44.25 0.12 14.01 16 3 H 0.01 0.76 6.92 -2.39 -0.02 0.74 16 4 C -0.54 -29.66 8.37 25.60 0.21 -29.45 16 5 H 0.06 3.31 7.54 -2.91 -0.02 3.28 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -53.10 11.32 21.44 0.24 -52.86 16 8 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 N -0.59 -26.25 2.75 -830.20 -2.29 -28.53 16 13 C 0.07 2.36 7.92 127.77 1.01 3.37 16 14 C 0.54 23.93 7.52 86.79 0.65 24.59 16 15 O -0.60 -31.56 15.88 -3.88 -0.06 -31.62 16 16 C -0.06 -2.12 5.56 -20.11 -0.11 -2.24 16 17 C -0.16 -4.66 9.43 22.67 0.21 -4.45 16 18 C 0.25 5.05 6.75 38.17 0.26 5.31 16 19 N -0.86 -10.55 9.09 -51.46 -0.47 -11.01 16 20 C -0.21 -4.04 9.86 22.49 0.22 -3.82 16 21 C 0.14 3.28 7.29 22.32 0.16 3.45 16 22 F -0.14 -3.23 17.26 44.97 0.78 -2.46 16 23 C -0.21 -5.98 7.59 22.59 0.17 -5.81 16 24 H 0.05 2.22 6.68 -2.38 -0.02 2.20 16 25 H 0.07 3.83 6.07 -2.38 -0.01 3.81 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.07 2.12 6.89 -2.39 -0.02 2.10 16 29 H 0.10 2.78 5.26 -2.39 -0.01 2.76 16 30 H 0.07 2.44 6.44 -2.39 -0.02 2.43 16 31 H 0.13 3.82 7.79 -2.91 -0.02 3.80 16 32 H 0.41 4.27 8.84 -92.71 -0.82 3.45 16 33 H 0.41 2.78 8.84 -92.71 -0.82 1.96 16 34 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.16 4.59 4.03 -2.91 -0.01 4.58 16 Total: -1.00 -70.58 294.12 3.75 -66.82 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.48 Total: 13.95 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 4.00 Total: 0.37 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -2.51 Total: -92.40 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.06 Total: -31.62 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.58 3.75 -66.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165965776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.517 kcal (2) G-P(sol) polarization free energy of solvation -70.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds