Wall clock time and date at job start Mon Mar 30 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99951 * 2 1 4 4 C 1.46900 * 111.00214 * 123.95171 * 2 1 3 5 5 C 1.53004 * 109.47221 * 170.00158 * 4 2 1 6 6 S 1.81402 * 109.47016 * 179.97438 * 5 4 2 7 7 C 1.76202 * 102.99824 * 180.02562 * 6 5 4 8 8 C 1.39681 * 119.84494 * 359.97438 * 7 6 5 9 9 C 1.38020 * 120.54134 * 180.02562 * 8 7 6 10 10 C 1.38757 * 120.22859 * 0.23439 * 9 8 7 11 11 N 1.38838 * 120.16045 * 179.74513 * 10 9 8 12 12 C 1.41587 * 119.68375 * 359.52271 * 10 9 8 13 13 C 1.41029 * 120.26946 * 180.22753 * 12 10 9 14 14 H 1.08001 * 119.99440 * 333.89074 * 13 12 10 15 15 C 1.39871 * 120.00623 * 153.88618 * 13 12 10 16 16 N 1.30910 * 119.99453 * 343.97521 * 15 13 12 17 17 Si 1.86791 * 120.00144 * 163.96901 * 15 13 12 18 18 H 1.48504 * 109.46993 * 94.96999 * 17 15 13 19 19 H 1.48501 * 109.47181 * 214.96696 * 17 15 13 20 20 H 1.48496 * 109.47348 * 334.96939 * 17 15 13 21 21 C 1.38069 * 119.84352 * 180.02562 * 7 6 5 22 22 H 1.09000 * 109.47397 * 296.03965 * 1 2 3 23 23 H 1.08993 * 109.47530 * 56.04746 * 1 2 3 24 24 H 1.09010 * 109.46869 * 176.04500 * 1 2 3 25 25 H 1.09000 * 109.47236 * 183.95606 * 3 2 1 26 26 H 1.09001 * 109.46778 * 303.95754 * 3 2 1 27 27 H 1.09001 * 109.46756 * 63.95121 * 3 2 1 28 28 H 1.08997 * 109.47066 * 50.00483 * 4 2 1 29 29 H 1.08998 * 109.47370 * 290.00087 * 4 2 1 30 30 H 1.08997 * 109.46835 * 60.00183 * 5 4 2 31 31 H 1.08998 * 109.46890 * 300.00222 * 5 4 2 32 32 H 1.07993 * 119.72742 * 0.02562 * 8 7 6 33 33 H 1.07996 * 119.88483 * 179.97438 * 9 8 7 34 34 H 0.96993 * 119.99897 * 359.97438 * 11 10 9 35 35 H 0.96996 * 119.99772 * 180.02562 * 11 10 9 36 36 H 0.97005 * 119.99670 * 179.97438 * 16 15 13 37 37 H 1.07994 * 120.12224 * 359.97371 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5045 -0.9552 0.9703 6 16 4.1547 -1.9004 2.3755 7 6 5.8753 -2.0153 2.0137 8 6 6.3815 -1.4315 0.8500 9 6 7.7267 -1.5133 0.5522 10 6 8.5918 -2.1825 1.4061 11 7 9.9438 -2.2684 1.1024 12 6 8.0899 -2.7734 2.5908 13 6 8.9590 -3.4524 3.4698 14 1 9.8704 -3.8936 3.0942 15 6 8.6407 -3.5544 4.8280 16 7 7.7256 -2.7746 5.3461 17 14 9.5210 -4.8033 5.9024 18 1 10.6676 -4.1497 6.5833 19 1 8.5779 -5.3333 6.9197 20 1 10.0175 -5.9198 5.0585 21 6 6.7168 -2.6830 2.8812 22 1 -0.3634 0.4511 0.9233 23 1 -0.3634 0.5739 -0.8524 24 1 -0.3633 -1.0253 -0.0709 25 1 3.0827 1.3433 -0.0709 26 1 1.5897 1.9163 -0.8524 27 1 1.7043 1.8723 0.9233 28 1 1.5091 -1.7406 1.1756 29 1 1.7975 -0.2247 2.0628 30 1 3.9909 0.0194 0.9323 31 1 3.7024 -1.4964 0.0452 32 1 5.7147 -0.9119 0.1779 33 1 8.1065 -1.0583 -0.3506 34 1 10.2856 -1.8604 0.2916 35 1 10.5464 -2.7372 1.7008 36 1 7.5046 -2.8456 6.2880 37 1 6.3221 -3.1336 3.7798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166398140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:00 Heat of formation + Delta-G solvation = 19.289267 kcal Electronic energy + Delta-G solvation = -17392.735784 eV Core-core repulsion = 14681.506988 eV Total energy + Delta-G solvation = -2711.228796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -37.75321 -37.61794 -33.61841 -33.17620 -31.05074 -29.52943 -27.69525 -27.58260 -25.41768 -24.28266 -21.51306 -20.78891 -20.37521 -17.42970 -16.19590 -16.00460 -15.62038 -15.54407 -15.26353 -14.82640 -14.46606 -13.85169 -13.44210 -12.88355 -12.71191 -12.47777 -12.45911 -12.09443 -11.97784 -11.81778 -11.46310 -11.37007 -11.14937 -11.05485 -10.98098 -10.49263 -10.08747 -9.77096 -9.56769 -9.24523 -9.12099 -8.46961 -7.59700 -7.32435 -6.69556 -5.89403 -4.17296 2.34230 2.77261 3.03202 3.11232 3.13942 3.20375 3.47301 3.98381 4.01809 4.65423 4.91795 5.04349 5.12948 5.20840 5.26997 5.44684 5.51760 5.62116 5.65501 5.71339 5.83720 5.93012 6.10772 6.20902 6.37232 6.88770 6.91554 6.95946 7.04986 7.22797 7.38739 7.57946 7.76291 7.90000 8.14147 8.40675 8.73695 8.82190 9.04039 9.10720 10.29717 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.004488 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.896273 B = 6237.964390 C = 7062.521842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.019 3.981 4 C 0.072 3.928 5 C -0.097 4.097 6 S -0.161 6.161 7 C -0.099 4.099 8 C -0.196 4.196 9 C -0.170 4.170 10 C 0.122 3.878 11 N -0.883 5.883 12 C 0.075 3.925 13 C -0.464 4.464 14 H 0.074 0.926 15 C 0.075 3.925 16 N -0.798 5.798 17 Si 0.904 3.096 18 H -0.273 1.273 19 H -0.276 1.276 20 H -0.263 1.263 21 C -0.113 4.113 22 H 0.025 0.975 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.377 0.623 35 H 0.392 0.608 36 H 0.279 0.721 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 4.027 -6.131 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.129 4.129 4 C -0.056 4.056 5 C -0.246 4.246 6 S 0.078 5.922 7 C -0.212 4.212 8 C -0.221 4.221 9 C -0.196 4.196 10 C 0.019 3.981 11 N -0.424 5.424 12 C 0.068 3.932 13 C -0.495 4.495 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.424 5.424 17 Si 0.729 3.271 18 H -0.198 1.198 19 H -0.201 1.201 20 H -0.187 1.187 21 C -0.138 4.138 22 H 0.043 0.957 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.203 0.797 35 H 0.221 0.779 36 H 0.090 0.910 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.477 3.456 -5.392 10.624 hybrid contribution 1.259 0.475 0.141 1.353 sum -7.218 3.931 -5.251 9.754 Atomic orbital electron populations 1.22370 0.87215 1.02328 1.00376 1.61973 1.07772 1.14026 1.43305 1.22465 1.01458 0.88630 1.00340 1.21813 0.93582 0.98822 0.91428 1.23412 0.97293 1.02962 1.00942 1.84926 1.05348 1.70472 1.31480 1.20911 0.93047 1.07494 0.99744 1.20106 0.95006 1.08859 0.98082 1.19829 0.93188 1.06779 0.99754 1.18013 0.83897 0.99347 0.96816 1.41918 1.06490 1.66155 1.27834 1.17094 0.91847 0.93548 0.90722 1.19108 1.06523 1.31794 0.92099 0.90840 1.25775 0.94789 0.94904 0.98668 1.69847 1.27077 1.31287 1.14181 0.86368 0.79635 0.81384 0.79701 1.19839 1.20125 1.18651 1.20662 0.91613 1.02239 0.99324 0.95659 0.91395 0.91257 0.90870 0.91489 0.95493 0.89950 0.93911 0.90200 0.89383 0.89141 0.89175 0.79720 0.77936 0.91041 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.57 60.06 0.57 0.82 16 2 N -0.55 -6.67 5.02 -251.26 -1.26 -7.93 16 3 C 0.02 0.21 9.32 60.07 0.56 0.77 16 4 C 0.07 0.98 4.97 -3.82 -0.02 0.96 16 5 C -0.10 -1.58 4.25 37.16 0.16 -1.42 16 6 S -0.16 -3.27 21.91 -107.50 -2.36 -5.63 16 7 C -0.10 -2.37 6.10 -39.10 -0.24 -2.61 16 8 C -0.20 -4.43 9.36 -39.12 -0.37 -4.79 16 9 C -0.17 -3.82 9.86 -39.47 -0.39 -4.21 16 10 C 0.12 2.89 6.79 -83.22 -0.56 2.33 16 11 N -0.88 -17.37 8.98 32.75 0.29 -17.07 16 12 C 0.07 1.97 5.57 -106.66 -0.59 1.37 16 13 C -0.46 -12.01 8.48 -37.91 -0.32 -12.33 16 14 H 0.07 1.79 6.69 -52.49 -0.35 1.44 16 15 C 0.08 1.89 5.16 -17.33 -0.09 1.80 16 16 N -0.80 -20.96 10.97 55.54 0.61 -20.35 16 17 Si 0.90 18.76 29.59 -169.99 -5.03 13.73 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 C -0.11 -2.99 8.39 -38.74 -0.32 -3.31 16 22 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 24 H 0.07 0.63 8.12 -51.92 -0.42 0.21 16 25 H 0.07 0.85 6.47 -51.93 -0.34 0.52 16 26 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 29 H 0.04 0.59 8.12 -51.93 -0.42 0.16 16 30 H 0.08 1.30 6.14 -51.93 -0.32 0.98 16 31 H 0.09 1.47 7.73 -51.93 -0.40 1.06 16 32 H 0.09 1.83 5.83 -52.49 -0.31 1.53 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.38 6.19 8.83 -40.82 -0.36 5.83 16 35 H 0.39 7.53 7.05 -40.82 -0.29 7.24 16 36 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 37 H 0.13 3.48 6.23 -52.49 -0.33 3.15 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -28.19 313.77 -9.83 -38.02 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -5.20 Total: 15.12 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.62 Total: -20.62 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.36 Total: -45.35 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.36 Total: -5.63 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.19 -9.83 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166398140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.309 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds