Wall clock time and date at job start Mon Mar 30 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99951 * 2 1 4 4 C 1.46900 * 111.00214 * 123.95171 * 2 1 3 5 5 C 1.53004 * 109.47221 * 170.00158 * 4 2 1 6 6 S 1.81402 * 109.47016 * 179.97438 * 5 4 2 7 7 C 1.76202 * 102.99824 * 180.02562 * 6 5 4 8 8 C 1.39681 * 119.84494 * 359.97438 * 7 6 5 9 9 C 1.38020 * 120.54134 * 180.02562 * 8 7 6 10 10 C 1.38757 * 120.22859 * 0.23439 * 9 8 7 11 11 N 1.38838 * 120.16045 * 179.74513 * 10 9 8 12 12 C 1.41587 * 119.68375 * 359.52271 * 10 9 8 13 13 C 1.41029 * 120.26946 * 180.22753 * 12 10 9 14 14 H 1.08001 * 119.99440 * 333.89074 * 13 12 10 15 15 C 1.39871 * 120.00623 * 153.88618 * 13 12 10 16 16 N 1.30910 * 119.99453 * 343.97521 * 15 13 12 17 17 Si 1.86791 * 120.00144 * 163.96901 * 15 13 12 18 18 H 1.48504 * 109.46993 * 94.96999 * 17 15 13 19 19 H 1.48501 * 109.47181 * 214.96696 * 17 15 13 20 20 H 1.48496 * 109.47348 * 334.96939 * 17 15 13 21 21 C 1.38069 * 119.84352 * 180.02562 * 7 6 5 22 22 H 1.09000 * 109.47397 * 296.03965 * 1 2 3 23 23 H 1.08993 * 109.47530 * 56.04746 * 1 2 3 24 24 H 1.09010 * 109.46869 * 176.04500 * 1 2 3 25 25 H 1.09000 * 109.47236 * 183.95606 * 3 2 1 26 26 H 1.09001 * 109.46778 * 303.95754 * 3 2 1 27 27 H 1.09001 * 109.46756 * 63.95121 * 3 2 1 28 28 H 1.08997 * 109.47066 * 50.00483 * 4 2 1 29 29 H 1.08998 * 109.47370 * 290.00087 * 4 2 1 30 30 H 1.08997 * 109.46835 * 60.00183 * 5 4 2 31 31 H 1.08998 * 109.46890 * 300.00222 * 5 4 2 32 32 H 1.07993 * 119.72742 * 0.02562 * 8 7 6 33 33 H 1.07996 * 119.88483 * 179.97438 * 9 8 7 34 34 H 0.96993 * 119.99897 * 359.97438 * 11 10 9 35 35 H 0.96996 * 119.99772 * 180.02562 * 11 10 9 36 36 H 0.97005 * 119.99670 * 179.97438 * 16 15 13 37 37 H 1.07994 * 120.12224 * 359.97371 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5045 -0.9552 0.9703 6 16 4.1547 -1.9004 2.3755 7 6 5.8753 -2.0153 2.0137 8 6 6.3815 -1.4315 0.8500 9 6 7.7267 -1.5133 0.5522 10 6 8.5918 -2.1825 1.4061 11 7 9.9438 -2.2684 1.1024 12 6 8.0899 -2.7734 2.5908 13 6 8.9590 -3.4524 3.4698 14 1 9.8704 -3.8936 3.0942 15 6 8.6407 -3.5544 4.8280 16 7 7.7256 -2.7746 5.3461 17 14 9.5210 -4.8033 5.9024 18 1 10.6676 -4.1497 6.5833 19 1 8.5779 -5.3333 6.9197 20 1 10.0175 -5.9198 5.0585 21 6 6.7168 -2.6830 2.8812 22 1 -0.3634 0.4511 0.9233 23 1 -0.3634 0.5739 -0.8524 24 1 -0.3633 -1.0253 -0.0709 25 1 3.0827 1.3433 -0.0709 26 1 1.5897 1.9163 -0.8524 27 1 1.7043 1.8723 0.9233 28 1 1.5091 -1.7406 1.1756 29 1 1.7975 -0.2247 2.0628 30 1 3.9909 0.0194 0.9323 31 1 3.7024 -1.4964 0.0452 32 1 5.7147 -0.9119 0.1779 33 1 8.1065 -1.0583 -0.3506 34 1 10.2856 -1.8604 0.2916 35 1 10.5464 -2.7372 1.7008 36 1 7.5046 -2.8456 6.2880 37 1 6.3221 -3.1336 3.7798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166398140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:55 Heat of formation + Delta-G solvation = 1.721593 kcal Electronic energy + Delta-G solvation = -17393.497575 eV Core-core repulsion = 14681.506988 eV Total energy + Delta-G solvation = -2711.990587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 4.14 seconds Orbital eigenvalues (eV) -39.56465 -38.57876 -35.48156 -34.90878 -32.26274 -31.34634 -29.37254 -28.50065 -27.16907 -25.46149 -23.12109 -22.35276 -21.87395 -19.27652 -17.84871 -17.51227 -17.20769 -16.70804 -16.60139 -16.43382 -15.60412 -15.00923 -14.90420 -14.59496 -14.35158 -14.24792 -13.84537 -13.38599 -13.19628 -12.98111 -12.91840 -12.72087 -12.62510 -12.46089 -12.20694 -12.17624 -11.79030 -11.47856 -11.38324 -10.99997 -10.86189 -9.40090 -9.36813 -9.10541 -8.55593 -7.63071 -6.09619 0.83712 0.97178 1.16078 1.40629 1.49770 1.55180 1.83874 2.24763 2.79328 3.08866 3.58718 3.74956 3.80097 3.93132 4.26602 4.41135 4.46672 4.48977 4.59634 4.62813 4.68082 4.80472 4.87556 5.01535 5.03112 5.10536 5.21051 5.35463 5.55101 5.74319 5.92523 5.94047 6.01955 6.04673 6.28665 6.52977 6.88949 6.97604 7.23615 7.50951 8.45736 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.004488 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.896273 B = 6237.964390 C = 7062.521842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.556 5.556 3 C 0.018 3.982 4 C 0.080 3.920 5 C -0.079 4.079 6 S -0.178 6.178 7 C -0.117 4.117 8 C -0.191 4.191 9 C -0.178 4.178 10 C 0.117 3.883 11 N -0.870 5.870 12 C 0.039 3.961 13 C -0.491 4.491 14 H 0.081 0.919 15 C 0.031 3.969 16 N -0.836 5.836 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.258 1.258 21 C -0.140 4.140 22 H 0.029 0.971 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.028 0.972 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.396 0.604 35 H 0.395 0.605 36 H 0.282 0.718 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 4.578 -7.494 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.281 5.281 3 C -0.130 4.130 4 C -0.049 4.049 5 C -0.228 4.228 6 S 0.061 5.939 7 C -0.231 4.231 8 C -0.216 4.216 9 C -0.203 4.203 10 C 0.013 3.987 11 N -0.412 5.412 12 C 0.032 3.968 13 C -0.522 4.522 14 H 0.099 0.901 15 C -0.182 4.182 16 N -0.463 5.463 17 Si 0.799 3.201 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.166 4.166 22 H 0.048 0.952 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.047 0.953 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.224 0.776 35 H 0.223 0.777 36 H 0.092 0.908 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.692 4.019 -6.786 11.737 hybrid contribution 1.250 0.401 0.425 1.380 sum -7.443 4.420 -6.360 10.741 Atomic orbital electron populations 1.22452 0.85462 1.03083 1.01354 1.61974 1.09382 1.14549 1.42210 1.22514 1.00965 0.88233 1.01333 1.21686 0.91659 0.99437 0.92161 1.23415 0.98896 1.01935 0.98559 1.84890 1.03298 1.71508 1.34217 1.21147 0.94903 1.07162 0.99850 1.20475 0.95709 1.07743 0.97634 1.20215 0.93079 1.06398 1.00608 1.18188 0.85622 0.98756 0.96139 1.41816 1.05093 1.65732 1.28540 1.17464 0.92201 0.94817 0.92277 1.19398 1.07128 1.32817 0.92864 0.90118 1.26630 0.95429 0.96301 0.99797 1.69946 1.28795 1.32953 1.14615 0.85264 0.78432 0.78741 0.77671 1.18925 1.19989 1.18141 1.20572 0.92556 1.04048 0.99419 0.95215 0.89721 0.90813 0.91819 0.89582 0.95291 0.89667 0.94080 0.90011 0.89471 0.86651 0.85946 0.77597 0.77659 0.90810 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.57 127.69 1.22 1.63 16 2 N -0.56 -12.29 5.02 -948.84 -4.76 -17.05 16 3 C 0.02 0.35 9.32 127.69 1.19 1.54 16 4 C 0.08 2.04 4.97 86.30 0.43 2.47 16 5 C -0.08 -2.47 4.25 71.98 0.31 -2.16 16 6 S -0.18 -7.29 21.91 -56.49 -1.24 -8.53 16 7 C -0.12 -5.71 6.10 22.58 0.14 -5.57 16 8 C -0.19 -8.44 9.36 22.57 0.21 -8.23 16 9 C -0.18 -7.70 9.86 22.34 0.22 -7.48 16 10 C 0.12 5.51 6.79 38.98 0.26 5.78 16 11 N -0.87 -33.07 8.98 -50.30 -0.45 -33.52 16 12 C 0.04 2.10 5.57 -21.18 -0.12 1.98 16 13 C -0.49 -25.96 8.48 23.35 0.20 -25.76 16 14 H 0.08 3.97 6.69 -2.91 -0.02 3.95 16 15 C 0.03 1.61 5.16 85.23 0.44 2.05 16 16 N -0.84 -45.59 10.97 21.82 0.24 -45.35 16 17 Si 0.98 39.09 29.59 68.60 2.03 41.12 16 18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 C -0.14 -7.72 8.39 22.82 0.19 -7.53 16 22 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 24 H 0.07 1.16 8.12 -2.38 -0.02 1.14 16 25 H 0.06 1.36 6.47 -2.39 -0.02 1.34 16 26 H 0.09 1.35 8.12 -2.39 -0.02 1.33 16 27 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 2.13 8.06 -2.39 -0.02 2.12 16 29 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.08 2.53 6.14 -2.39 -0.01 2.51 16 31 H 0.09 2.75 7.73 -2.39 -0.02 2.73 16 32 H 0.12 4.43 5.83 -2.91 -0.02 4.41 16 33 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.40 12.08 8.83 -92.71 -0.82 11.26 16 35 H 0.39 14.80 7.05 -92.71 -0.65 14.15 16 36 H 0.28 14.14 8.30 -92.70 -0.77 13.37 16 37 H 0.10 5.82 6.23 -2.91 -0.02 5.80 16 Total: -1.00 -61.84 313.77 0.13 -61.71 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.38 Total: 42.90 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 4.69 Total: -41.28 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -4.97 Total: -95.92 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 16 Polarization: -7.29 SS G_CDS: -1.24 Total: -8.53 kcal Total: -61.84 0.13 -61.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166398140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.432 kcal (2) G-P(sol) polarization free energy of solvation -61.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.14 seconds