Wall clock time and date at job start Mon Mar 30 2020 05:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 N 1.46496 * 109.47160 * 260.30726 * 8 7 6 10 10 C 1.34774 * 120.00271 * 179.97438 * 9 8 7 11 11 O 1.21442 * 119.99853 * 0.02562 * 10 9 8 12 12 C 1.48831 * 120.00306 * 179.97438 * 10 9 8 13 13 O 1.21512 * 119.99676 * 0.02562 * 12 10 9 14 14 N 1.34768 * 120.00407 * 180.02562 * 12 10 9 15 15 C 1.36118 * 120.00531 * 180.02562 * 14 12 10 16 16 H 1.08001 * 119.99476 * 359.97438 * 15 14 12 17 17 C 1.39590 * 120.00497 * 180.02562 * 15 14 12 18 18 N 1.31015 * 119.99961 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99730 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47442 * 89.99989 * 19 17 15 21 21 H 1.48506 * 109.47273 * 210.00205 * 19 17 15 22 22 H 1.48507 * 109.47141 * 329.99994 * 19 17 15 23 23 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 24 24 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 25 25 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 26 26 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 27 27 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 28 28 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 29 29 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 30 30 H 1.09004 * 109.46922 * 20.30232 * 8 7 6 31 31 H 1.08998 * 109.47326 * 140.30662 * 8 7 6 32 32 H 0.97001 * 119.99640 * 359.97438 * 9 8 7 33 33 H 0.97001 * 119.99988 * 0.02562 * 14 12 10 34 34 H 0.96995 * 119.99544 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 7 1.4800 -2.9554 -1.3608 10 6 1.0289 -4.2020 -1.6036 11 8 0.9369 -5.0021 -0.6947 12 6 0.6424 -4.5977 -2.9853 13 8 0.7340 -3.7969 -3.8946 14 7 0.1908 -5.8440 -3.2279 15 6 -0.1622 -6.2061 -4.4917 16 1 -0.0808 -5.4944 -5.2999 17 6 -0.6304 -7.4969 -4.7430 18 7 -0.9697 -7.8455 -5.9595 19 14 -0.7719 -8.7277 -3.3449 20 1 -2.1199 -8.6260 -2.7303 21 1 -0.5706 -10.1013 -3.8723 22 1 0.2626 -8.4343 -2.3206 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 5.0836 1.7155 1.0262 27 1 5.6089 0.9983 -0.5158 28 1 4.5560 2.4334 -0.5147 29 1 4.4892 -1.3485 -0.0129 30 1 2.6655 -3.2107 0.3503 31 1 0.9990 -2.6673 0.6602 32 1 1.5531 -2.3161 -2.0867 33 1 0.1173 -6.4832 -2.5020 34 1 -1.2947 -8.7425 -6.1341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168826468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:52 Heat of formation + Delta-G solvation = -18.089283 kcal Electronic energy + Delta-G solvation = -19363.876274 eV Core-core repulsion = 16104.733408 eV Total energy + Delta-G solvation = -3259.142866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32809 -41.25454 -39.19195 -36.67122 -35.93581 -34.61233 -33.90039 -31.84849 -30.43985 -28.46902 -27.38401 -25.54523 -23.82628 -21.83262 -21.29874 -20.89109 -20.51888 -18.79679 -17.72424 -17.45009 -16.88741 -16.69610 -16.44923 -15.91846 -15.44457 -15.31319 -14.87982 -14.66373 -14.39349 -14.33156 -14.25913 -13.85826 -13.49910 -13.06420 -13.01204 -12.96725 -12.90557 -12.52943 -12.47070 -11.96476 -11.68030 -11.54300 -10.44708 -10.38196 -10.21395 -10.14889 -9.46272 -8.59760 -6.13874 0.58387 0.84093 1.31385 1.36129 1.39794 1.43371 1.62674 2.09729 2.13902 2.34164 3.10006 3.21149 3.50394 3.85012 3.87638 4.12247 4.21587 4.39538 4.43210 4.45272 4.69310 4.70285 4.81061 4.99619 5.05458 5.10531 5.29548 5.32676 5.64271 5.77038 6.07867 6.15307 6.42623 6.62514 6.69165 6.96899 7.19083 7.66658 8.54964 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038454 B = 0.003746 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.973998 B = 7472.226653 C = 7576.039921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.081 3.919 3 N -0.333 5.333 4 N -0.378 5.378 5 C 0.093 3.907 6 C 0.091 3.909 7 C -0.278 4.278 8 C 0.205 3.795 9 N -0.686 5.686 10 C 0.524 3.476 11 O -0.560 6.560 12 C 0.407 3.593 13 O -0.606 6.606 14 N -0.533 5.533 15 C -0.339 4.339 16 H 0.076 0.924 17 C 0.010 3.990 18 N -0.895 5.895 19 Si 0.949 3.051 20 H -0.252 1.252 21 H -0.258 1.258 22 H -0.246 1.246 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.211 0.789 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.412 0.588 33 H 0.393 0.607 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.176 13.148 16.277 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 N -0.157 5.157 4 N -0.158 5.158 5 C -0.047 4.047 6 C -0.058 4.058 7 C -0.290 4.290 8 C 0.082 3.918 9 N -0.338 5.338 10 C 0.306 3.694 11 O -0.439 6.439 12 C 0.192 3.808 13 O -0.493 6.493 14 N -0.171 5.171 15 C -0.469 4.469 16 H 0.094 0.906 17 C -0.195 4.195 18 N -0.532 5.532 19 Si 0.769 3.231 20 H -0.176 1.176 21 H -0.182 1.182 22 H -0.170 1.170 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.228 0.772 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.248 0.752 33 H 0.230 0.770 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.303 14.376 16.202 23.986 hybrid contribution -0.190 -1.276 -0.207 1.307 sum 10.112 13.100 15.995 23.015 Atomic orbital electron populations 1.20276 0.85854 1.04015 1.03442 1.22584 0.97779 0.90290 0.97879 1.77287 0.87746 1.23403 1.27245 1.48785 1.05844 1.05470 1.55705 1.22235 0.82702 0.94901 1.04840 1.22953 0.99749 0.85172 0.97893 1.19907 0.92987 0.94946 1.21170 1.19527 1.00530 0.90049 0.81676 1.45875 1.63714 1.11812 1.12374 1.19771 0.78141 0.83396 0.88056 1.90678 1.55216 1.51805 1.46228 1.19764 0.87474 0.83827 0.89761 1.90609 1.60207 1.51589 1.46881 1.41683 1.54229 1.11623 1.09576 1.19163 1.43070 0.99162 0.85501 0.90592 1.26098 0.94682 0.98761 0.99949 1.69554 1.39910 1.21862 1.21900 0.85574 0.80754 0.78448 0.78346 1.17601 1.18212 1.16962 0.90493 0.89657 0.90077 0.89134 0.86640 0.89313 0.77197 0.89629 0.90392 0.75217 0.77030 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 10.26 71.24 0.73 -0.86 16 2 C 0.08 1.94 7.22 43.10 0.31 2.25 16 3 N -0.33 -8.32 12.57 -47.38 -0.60 -8.91 16 4 N -0.38 -7.01 4.01 -369.56 -1.48 -8.49 16 5 C 0.09 0.82 11.47 127.77 1.47 2.29 16 6 C 0.09 1.58 11.40 83.54 0.95 2.54 16 7 C -0.28 -6.10 5.47 -20.14 -0.11 -6.21 16 8 C 0.20 4.91 5.87 85.63 0.50 5.41 16 9 N -0.69 -21.32 5.54 -468.75 -2.60 -23.92 16 10 C 0.52 20.73 7.87 87.08 0.69 21.42 16 11 O -0.56 -23.03 16.47 -3.53 -0.06 -23.09 16 12 C 0.41 19.86 7.82 87.08 0.68 20.54 16 13 O -0.61 -32.96 16.03 -3.75 -0.06 -33.02 16 14 N -0.53 -27.16 5.06 -308.87 -1.56 -28.72 16 15 C -0.34 -19.73 10.16 84.35 0.86 -18.87 16 16 H 0.08 5.08 7.36 -2.91 -0.02 5.06 16 17 C 0.01 0.53 5.51 85.14 0.47 1.00 16 18 N -0.89 -51.18 13.94 21.77 0.30 -50.88 16 19 Si 0.95 39.29 27.74 68.60 1.90 41.19 16 20 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.25 -9.56 6.53 99.48 0.65 -8.91 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.08 1.62 7.50 -2.39 -0.02 1.60 16 25 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.08 1.87 7.60 -2.39 -0.02 1.85 16 32 H 0.41 13.01 7.92 -92.71 -0.73 12.27 16 33 H 0.39 18.27 5.22 -92.71 -0.48 17.79 16 34 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 Total: -1.00 -74.78 305.96 2.27 -72.51 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.12 Total: 33.83 kcal Atomic # 6 Polarization: 22.95 SS G_CDS: 6.54 Total: 29.50 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -5.93 Total: -120.93 kcal Atomic # 8 Polarization: -55.99 SS G_CDS: -0.12 Total: -56.11 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.19 kcal Total: -74.78 2.27 -72.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168826468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.421 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds