Wall clock time and date at job start Mon Mar 30 2020 04:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34238 * 125.39416 * 2 1 4 4 C 1.38246 * 108.41283 * 179.87134 * 3 2 1 5 5 C 1.47400 * 126.45549 * 180.15268 * 4 3 2 6 6 N 1.34781 * 119.99804 * 180.30563 * 5 4 3 7 7 O 1.21603 * 119.99970 * 0.29610 * 5 4 3 8 8 C 1.41260 * 107.09041 * 0.38121 * 4 3 2 9 9 C 1.36444 * 107.00424 * 359.77098 * 8 4 3 10 10 C 1.46628 * 125.86176 * 179.97438 * 9 8 4 11 11 O 1.21605 * 120.00016 * 0.02562 * 10 9 8 12 12 O 1.34872 * 120.00012 * 180.02562 * 10 9 8 13 13 C 1.45199 * 116.99750 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47201 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47370 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00153 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00180 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99768 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00055 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46704 * 59.99915 * 19 17 15 21 21 H 1.48495 * 109.47124 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47039 * 300.00152 * 19 17 15 23 23 H 1.09002 * 109.47391 * 269.69525 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.69581 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.69708 * 1 2 3 26 26 H 1.07998 * 125.79363 * 0.02562 * 3 2 1 27 27 H 0.96992 * 120.00108 * 359.97438 * 6 5 4 28 28 H 0.96995 * 119.99655 * 179.97438 * 6 5 4 29 29 H 1.07996 * 126.49891 * 179.74049 * 8 4 3 30 30 H 1.09007 * 109.47146 * 299.99542 * 13 12 10 31 31 H 1.08997 * 109.47548 * 59.99692 * 13 12 10 32 32 H 1.08995 * 109.47199 * 299.99801 * 14 13 12 33 33 H 1.09003 * 109.46971 * 60.00253 * 14 13 12 34 34 H 0.97000 * 119.99724 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2425 1.0943 0.0000 4 6 3.5647 0.6905 0.0029 5 6 4.7486 1.5686 0.0071 6 7 5.9852 1.0325 0.0035 7 8 4.6096 2.7767 0.0137 8 6 3.5674 -0.7221 -0.0042 9 6 2.2634 -1.1236 -0.0059 10 6 1.7921 -2.5120 -0.0134 11 8 2.5939 -3.4263 -0.0182 12 8 0.4693 -2.7752 -0.0149 13 6 0.0753 -4.1727 -0.0229 14 6 -1.4514 -4.2722 -0.0228 15 6 -1.8604 -5.7226 -0.0318 16 1 -1.1068 -6.4962 -0.0367 17 6 -3.1968 -6.0621 -0.0339 18 7 -4.1145 -5.1201 -0.0285 19 14 -3.7037 -7.8600 -0.0458 20 1 -3.1640 -8.5344 1.1622 21 1 -5.1855 -7.9565 -0.0468 22 1 -3.1644 -8.5183 -1.2628 23 1 -0.3634 -0.0055 1.0276 24 1 -0.3633 -0.8873 -0.5186 25 1 -0.3633 0.8927 -0.5091 26 1 1.8942 2.1166 0.0004 27 1 6.0960 0.0690 -0.0016 28 1 6.7642 1.6103 0.0058 29 1 4.4368 -1.3627 -0.0081 30 1 0.4712 -4.6567 -0.9158 31 1 0.4713 -4.6670 0.8641 32 1 -1.8470 -3.7884 0.8702 33 1 -1.8478 -3.7778 -0.9098 34 1 -5.0546 -5.3590 -0.0296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176829488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:56 Heat of formation + Delta-G solvation = -90.759415 kcal Electronic energy + Delta-G solvation = -19244.653098 eV Core-core repulsion = 15950.066268 eV Total energy + Delta-G solvation = -3294.586830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78973 -39.66507 -38.89933 -36.23969 -33.97346 -33.44619 -32.80063 -30.65176 -29.62443 -27.04545 -25.38557 -23.51643 -22.72565 -21.00397 -20.08577 -19.73085 -18.43857 -16.91055 -16.85714 -16.32732 -16.09841 -15.98232 -15.36414 -15.30851 -14.57446 -14.50796 -13.99840 -13.70040 -13.36834 -13.10466 -12.64776 -12.41869 -12.35605 -12.19540 -11.34047 -11.12802 -10.83403 -10.82861 -10.52481 -10.22563 -9.83539 -9.77930 -9.73884 -9.41028 -9.09442 -8.57443 -8.51598 -6.18608 -4.23140 1.23511 1.60631 2.48095 2.97929 3.08033 3.25156 3.29545 3.32959 3.43378 3.55462 4.32539 4.62519 4.65953 4.86372 4.96046 5.12226 5.18461 5.19469 5.50083 5.66232 5.78254 5.97592 5.98708 6.28910 6.50725 6.54695 6.67237 6.75440 6.86586 7.23850 7.43727 7.50084 7.77285 8.03556 8.14987 8.18673 8.81892 9.41899 10.92835 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.049964 B = 0.003354 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.267382 B = 8346.075040 C = 8880.591520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.404 5.404 3 C 0.104 3.896 4 C -0.250 4.250 5 C 0.600 3.400 6 N -0.853 5.853 7 O -0.557 6.557 8 C -0.074 4.074 9 C -0.035 4.035 10 C 0.529 3.471 11 O -0.505 6.505 12 O -0.359 6.359 13 C 0.075 3.925 14 C 0.026 3.974 15 C -0.529 4.529 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.186 0.814 27 H 0.402 0.598 28 H 0.402 0.598 29 H 0.156 0.844 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.400 11.846 -0.019 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.075 5.075 3 C -0.039 4.039 4 C -0.259 4.259 5 C 0.388 3.612 6 N -0.415 5.415 7 O -0.437 6.437 8 C -0.099 4.099 9 C -0.143 4.143 10 C 0.373 3.627 11 O -0.394 6.394 12 O -0.276 6.276 13 C 0.003 3.997 14 C -0.011 4.011 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 H 0.106 0.894 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.203 0.797 27 H 0.231 0.769 28 H 0.233 0.767 29 H 0.174 0.826 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.704 12.200 -0.015 17.614 hybrid contribution 0.018 -1.395 0.018 1.395 sum 12.722 10.805 0.003 16.691 Atomic orbital electron populations 1.22576 0.74393 1.06272 1.05204 1.43991 1.07957 1.05128 1.50457 1.22367 0.89369 0.92206 0.99969 1.19406 0.92950 0.92979 1.20603 1.17312 0.82781 0.86777 0.74373 1.43628 1.07625 1.11812 1.78480 1.90801 1.86707 1.14760 1.51410 1.21104 0.94950 0.93567 1.00241 1.19293 0.90427 0.84755 1.19850 1.19777 0.82086 0.87293 0.73522 1.90869 1.56187 1.45584 1.46749 1.86597 1.23365 1.34516 1.83130 1.23720 1.00002 0.74721 1.01264 1.19165 0.85303 0.97865 0.98742 1.20931 0.92127 0.91131 1.52480 0.92242 1.24972 0.96422 0.97923 0.94729 1.69949 1.00808 1.32512 1.49614 0.86520 0.77408 0.84473 0.78850 1.20018 1.21093 1.20021 0.89414 0.86873 0.89075 0.79701 0.76921 0.76718 0.82626 0.92056 0.92052 0.95390 0.95422 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.51 59.85 0.63 1.19 16 2 N -0.40 -4.80 3.13 -120.15 -0.38 -5.17 16 3 C 0.10 1.13 11.17 -16.50 -0.18 0.95 16 4 C -0.25 -2.90 6.13 -105.02 -0.64 -3.55 16 5 C 0.60 6.97 8.09 -12.53 -0.10 6.86 16 6 N -0.85 -6.47 8.87 30.43 0.27 -6.20 16 7 O -0.56 -8.33 17.74 5.27 0.09 -8.23 16 8 C -0.07 -0.89 10.03 -39.08 -0.39 -1.28 16 9 C -0.03 -0.49 6.82 -82.43 -0.56 -1.05 16 10 C 0.53 9.12 7.92 34.12 0.27 9.39 16 11 O -0.50 -9.75 16.65 -19.35 -0.32 -10.07 16 12 O -0.36 -6.60 7.57 -40.96 -0.31 -6.91 16 13 C 0.08 1.57 5.42 37.16 0.20 1.78 16 14 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 15 C -0.53 -14.34 9.11 -34.44 -0.31 -14.65 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 19 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.11 1.39 6.08 -51.93 -0.32 1.08 16 25 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.40 2.21 7.81 -40.82 -0.32 1.89 16 28 H 0.40 2.41 8.93 -40.82 -0.36 2.04 16 29 H 0.16 1.55 7.54 -52.49 -0.40 1.15 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 307.39 15.07 4.63 4.63 Total: -1.00 -33.30 307.39 -5.53 -38.83 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.89 Total: 0.32 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.34 Total: 1.74 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.63 Total: -36.14 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.54 Total: -25.22 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.30 -5.53 -38.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176829488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.929 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds