Wall clock time and date at job start Mon Mar 30 2020 04:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34238 * 125.39416 * 2 1 4 4 C 1.38246 * 108.41283 * 179.87134 * 3 2 1 5 5 C 1.47400 * 126.45549 * 180.15268 * 4 3 2 6 6 N 1.34781 * 119.99804 * 180.30563 * 5 4 3 7 7 O 1.21603 * 119.99970 * 0.29610 * 5 4 3 8 8 C 1.41260 * 107.09041 * 0.38121 * 4 3 2 9 9 C 1.36444 * 107.00424 * 359.77098 * 8 4 3 10 10 C 1.46628 * 125.86176 * 179.97438 * 9 8 4 11 11 O 1.21605 * 120.00016 * 0.02562 * 10 9 8 12 12 O 1.34872 * 120.00012 * 180.02562 * 10 9 8 13 13 C 1.45199 * 116.99750 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47201 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47370 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00153 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00180 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99768 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00055 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46704 * 59.99915 * 19 17 15 21 21 H 1.48495 * 109.47124 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47039 * 300.00152 * 19 17 15 23 23 H 1.09002 * 109.47391 * 269.69525 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.69581 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.69708 * 1 2 3 26 26 H 1.07998 * 125.79363 * 0.02562 * 3 2 1 27 27 H 0.96992 * 120.00108 * 359.97438 * 6 5 4 28 28 H 0.96995 * 119.99655 * 179.97438 * 6 5 4 29 29 H 1.07996 * 126.49891 * 179.74049 * 8 4 3 30 30 H 1.09007 * 109.47146 * 299.99542 * 13 12 10 31 31 H 1.08997 * 109.47548 * 59.99692 * 13 12 10 32 32 H 1.08995 * 109.47199 * 299.99801 * 14 13 12 33 33 H 1.09003 * 109.46971 * 60.00253 * 14 13 12 34 34 H 0.97000 * 119.99724 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2425 1.0943 0.0000 4 6 3.5647 0.6905 0.0029 5 6 4.7486 1.5686 0.0071 6 7 5.9852 1.0325 0.0035 7 8 4.6096 2.7767 0.0137 8 6 3.5674 -0.7221 -0.0042 9 6 2.2634 -1.1236 -0.0059 10 6 1.7921 -2.5120 -0.0134 11 8 2.5939 -3.4263 -0.0182 12 8 0.4693 -2.7752 -0.0149 13 6 0.0753 -4.1727 -0.0229 14 6 -1.4514 -4.2722 -0.0228 15 6 -1.8604 -5.7226 -0.0318 16 1 -1.1068 -6.4962 -0.0367 17 6 -3.1968 -6.0621 -0.0339 18 7 -4.1145 -5.1201 -0.0285 19 14 -3.7037 -7.8600 -0.0458 20 1 -3.1640 -8.5344 1.1622 21 1 -5.1855 -7.9565 -0.0468 22 1 -3.1644 -8.5183 -1.2628 23 1 -0.3634 -0.0055 1.0276 24 1 -0.3633 -0.8873 -0.5186 25 1 -0.3633 0.8927 -0.5091 26 1 1.8942 2.1166 0.0004 27 1 6.0960 0.0690 -0.0016 28 1 6.7642 1.6103 0.0058 29 1 4.4368 -1.3627 -0.0081 30 1 0.4712 -4.6567 -0.9158 31 1 0.4713 -4.6670 0.8641 32 1 -1.8470 -3.7884 0.8702 33 1 -1.8478 -3.7778 -0.9098 34 1 -5.0546 -5.3590 -0.0296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176829488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:56 Heat of formation + Delta-G solvation = -113.848579 kcal Electronic energy + Delta-G solvation = -19245.654319 eV Core-core repulsion = 15950.066268 eV Total energy + Delta-G solvation = -3295.588052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.77928 -41.03222 -39.84410 -37.73909 -35.46818 -34.82117 -33.66913 -32.44980 -30.82522 -27.90295 -27.21407 -24.84631 -23.70456 -22.82267 -21.06111 -20.86460 -19.45335 -18.59789 -17.80972 -17.69903 -17.65403 -17.02070 -16.59237 -16.44749 -16.26093 -15.43323 -15.04232 -14.97946 -14.59334 -14.49141 -14.32248 -13.55757 -13.38143 -13.28942 -13.07564 -12.83531 -12.62354 -12.59470 -12.05424 -11.61793 -11.51671 -11.44536 -11.18209 -10.61769 -10.61094 -10.01709 -9.55150 -8.28045 -6.40448 0.11820 0.70778 1.40534 1.44058 1.49333 1.54060 1.69417 1.86745 2.39456 2.51460 2.79103 3.07034 3.54397 3.85078 3.87007 4.10986 4.21597 4.22306 4.29190 4.39895 4.61588 4.67734 4.79759 4.85124 5.20226 5.34701 5.45651 5.46574 5.59628 5.72428 5.95882 5.99283 6.06283 6.52615 6.62147 6.72871 7.29332 7.41832 8.84029 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.049964 B = 0.003354 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.267382 B = 8346.075040 C = 8880.591520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.403 5.403 3 C 0.122 3.878 4 C -0.261 4.261 5 C 0.600 3.400 6 N -0.833 5.833 7 O -0.595 6.595 8 C -0.054 4.054 9 C -0.071 4.071 10 C 0.529 3.471 11 O -0.532 6.532 12 O -0.358 6.358 13 C 0.091 3.909 14 C 0.035 3.965 15 C -0.552 4.552 16 H 0.064 0.936 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.267 1.267 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.126 0.874 26 H 0.213 0.787 27 H 0.414 0.586 28 H 0.412 0.588 29 H 0.174 0.826 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.307 12.100 -0.021 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.075 5.075 3 C -0.023 4.023 4 C -0.270 4.270 5 C 0.387 3.613 6 N -0.396 5.396 7 O -0.477 6.477 8 C -0.079 4.079 9 C -0.178 4.178 10 C 0.376 3.624 11 O -0.422 6.422 12 O -0.275 6.275 13 C 0.018 3.982 14 C -0.002 4.002 15 C -0.590 4.590 16 H 0.082 0.918 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.192 1.192 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.144 0.856 26 H 0.230 0.770 27 H 0.245 0.755 28 H 0.245 0.755 29 H 0.191 0.809 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.650 12.429 -0.017 18.461 hybrid contribution -0.190 -1.354 0.018 1.368 sum 13.461 11.075 0.001 17.431 Atomic orbital electron populations 1.22686 0.73554 1.06726 1.05698 1.44101 1.08499 1.04733 1.50148 1.22889 0.89129 0.92882 0.97392 1.19517 0.93561 0.92680 1.21236 1.17322 0.83641 0.86169 0.74175 1.43481 1.06849 1.12758 1.76537 1.90789 1.87282 1.16117 1.53541 1.21372 0.94723 0.94034 0.97768 1.19073 0.91506 0.83781 1.23485 1.20226 0.81051 0.88547 0.72568 1.90844 1.56352 1.46688 1.48353 1.86606 1.24712 1.32623 1.83575 1.23228 0.97505 0.76335 1.01148 1.18949 0.87769 0.96680 0.96845 1.21353 0.92725 0.92334 1.52570 0.91805 1.25893 0.96410 1.02594 0.94096 1.70062 1.01220 1.34772 1.50328 0.85436 0.77148 0.78842 0.79272 1.19149 1.20540 1.19153 0.88886 0.89460 0.85572 0.76996 0.75483 0.75530 0.80852 0.92106 0.92136 0.97257 0.97246 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.01 10.51 127.77 1.34 2.35 16 2 N -0.40 -8.99 3.13 -534.03 -1.67 -10.66 16 3 C 0.12 2.35 11.17 84.33 0.94 3.30 16 4 C -0.26 -5.49 6.13 -20.12 -0.12 -5.62 16 5 C 0.60 12.66 8.09 86.66 0.70 13.36 16 6 N -0.83 -10.66 8.87 -175.90 -1.56 -12.22 16 7 O -0.59 -16.78 17.74 -4.04 -0.07 -16.85 16 8 C -0.05 -1.20 10.03 22.59 0.23 -0.97 16 9 C -0.07 -1.94 6.82 39.97 0.27 -1.67 16 10 C 0.53 18.31 7.92 70.01 0.55 18.86 16 11 O -0.53 -20.57 16.65 19.49 0.32 -20.24 16 12 O -0.36 -13.44 7.57 -57.86 -0.44 -13.88 16 13 C 0.09 3.89 5.42 71.98 0.39 4.28 16 14 C 0.03 1.77 5.35 29.85 0.16 1.93 16 15 C -0.55 -30.30 9.11 25.60 0.23 -30.07 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.01 0.52 5.46 84.66 0.46 0.98 16 18 N -0.92 -53.60 13.29 21.45 0.28 -53.32 16 19 Si 0.97 42.53 29.54 68.60 2.03 44.55 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.09 2.17 6.08 -2.39 -0.01 2.16 16 25 H 0.13 1.48 8.13 -2.38 -0.02 1.46 16 26 H 0.21 2.88 8.06 -2.91 -0.02 2.85 16 27 H 0.41 3.43 7.81 -92.71 -0.72 2.71 16 28 H 0.41 3.97 8.93 -92.71 -0.83 3.14 16 29 H 0.17 3.08 7.54 -2.91 -0.02 3.06 16 30 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 31 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -71.73 307.39 3.66 -68.07 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -0.40 Total: 7.80 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.16 Total: 6.73 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -2.94 Total: -76.19 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.18 Total: -50.97 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -71.73 3.66 -68.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176829488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.776 kcal (2) G-P(sol) polarization free energy of solvation -71.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds