Wall clock time and date at job start Mon Mar 30 2020 04:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35993 * 116.99714 * 2 1 4 4 C 1.38691 * 119.96712 * 359.97438 * 3 2 1 5 5 C 1.38231 * 120.10215 * 180.02562 * 4 3 2 6 6 C 1.38675 * 120.03103 * 0.25995 * 5 4 3 7 7 N 1.40229 * 120.03079 * 179.69749 * 6 5 4 8 8 C 1.39277 * 119.93436 * 359.47190 * 6 5 4 9 9 O 1.36007 * 120.05362 * 180.25610 * 8 6 5 10 10 C 1.42900 * 116.99716 * 180.29190 * 9 8 6 11 11 C 1.50704 * 109.46986 * 179.97438 * 10 9 8 12 12 O 1.21294 * 119.99556 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00380 * 180.02562 * 11 10 9 14 14 C 1.37101 * 120.00430 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99282 * 359.97438 * 14 13 11 16 16 C 1.38943 * 120.00211 * 179.97438 * 14 13 11 17 17 N 1.31421 * 120.00091 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00102 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47043 * 90.00186 * 18 16 14 20 20 H 1.48499 * 109.47145 * 210.00011 * 18 16 14 21 21 H 1.48501 * 109.47075 * 330.00009 * 18 16 14 22 22 C 1.38498 * 119.89433 * 0.54429 * 8 6 5 23 23 H 1.09005 * 109.47350 * 300.00243 * 1 2 3 24 24 H 1.08999 * 109.47001 * 60.00513 * 1 2 3 25 25 H 1.09000 * 109.46812 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.94574 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.97896 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00350 * 359.97438 * 7 6 5 29 29 H 0.97001 * 119.99975 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47415 * 299.99629 * 10 9 8 31 31 H 1.09002 * 109.47236 * 60.00280 * 10 9 8 32 32 H 0.97005 * 119.99515 * 359.97438 * 13 11 10 33 33 H 0.96994 * 119.99852 * 180.02562 * 17 16 14 34 34 H 1.07997 * 120.01616 * 179.72577 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2903 2.3744 -0.0005 5 6 1.9149 3.6076 -0.0011 6 6 3.2995 3.6842 -0.0065 7 7 3.9331 4.9352 -0.0135 8 6 4.0602 2.5176 -0.0003 9 8 5.4183 2.5900 -0.0004 10 6 6.1339 1.3530 -0.0003 11 6 7.6153 1.6297 -0.0010 12 8 8.0185 2.7736 -0.0020 13 7 8.4920 0.6061 -0.0016 14 6 9.8397 0.8578 -0.0018 15 1 10.1987 1.8764 -0.0018 16 6 10.7436 -0.1975 -0.0018 17 7 10.3066 -1.4369 -0.0023 18 14 12.5798 0.1455 -0.0027 19 1 13.0670 0.2367 1.3971 20 1 13.2887 -0.9557 -0.7027 21 1 12.8435 1.4281 -0.7033 22 6 3.4314 1.2835 -0.0001 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2118 2.3162 -0.0005 27 1 1.3241 4.5117 -0.0019 28 1 3.4029 5.7475 -0.0149 29 1 4.9016 4.9883 -0.0169 30 1 5.8711 0.7813 0.8897 31 1 5.8710 0.7812 -0.8903 32 1 8.1695 -0.3087 -0.0012 33 1 10.9376 -2.1735 -0.0020 34 1 4.0193 0.3776 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224815389.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:49 Heat of formation + Delta-G solvation = -82.202786 kcal Electronic energy + Delta-G solvation = -19373.638240 eV Core-core repulsion = 16079.422453 eV Total energy + Delta-G solvation = -3294.215787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37599 -38.95926 -37.92950 -36.47852 -33.97806 -33.64853 -31.34864 -30.33054 -28.79499 -27.57648 -26.73078 -24.66395 -22.47268 -21.59385 -19.47347 -18.60473 -18.03213 -17.13198 -16.67988 -16.24556 -15.90703 -15.65776 -15.51961 -15.09749 -14.70113 -14.21764 -13.84363 -13.60658 -13.51675 -12.79809 -12.51379 -12.47788 -12.24666 -11.62568 -11.59620 -11.56348 -11.13704 -10.91788 -10.66855 -10.42512 -10.27947 -9.77411 -9.58092 -8.47080 -8.42717 -8.05394 -6.92262 -6.47810 -3.89583 1.42124 1.70320 3.14822 3.17356 3.25139 3.30966 3.40790 3.77111 3.89549 4.10245 4.17820 4.78708 4.93483 5.01193 5.05643 5.12285 5.17234 5.33513 5.35686 5.49123 5.59160 5.71878 5.72653 5.99109 6.12993 6.20978 6.42589 6.61847 7.37867 7.42392 7.49937 7.81994 7.97975 8.02262 8.51864 9.09913 9.42626 9.93027 10.69589 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029449 B = 0.003891 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.575984 B = 7193.715134 C = 8123.839520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.106 3.894 4 C -0.201 4.201 5 C -0.135 4.135 6 C 0.164 3.836 7 N -0.876 5.876 8 C 0.102 3.898 9 O -0.284 6.284 10 C 0.053 3.947 11 C 0.441 3.559 12 O -0.576 6.576 13 N -0.554 5.554 14 C -0.302 4.302 15 H 0.105 0.895 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.199 4.199 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.393 0.607 29 H 0.408 0.592 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.394 0.606 33 H 0.273 0.727 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 3.703 -0.015 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.059 3.941 4 C -0.220 4.220 5 C -0.159 4.159 6 C 0.060 3.940 7 N -0.419 5.419 8 C 0.053 3.947 9 O -0.196 6.196 10 C -0.026 4.026 11 C 0.226 3.774 12 O -0.460 6.460 13 N -0.192 5.192 14 C -0.431 4.431 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.539 5.539 18 Si 0.760 3.240 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.219 4.219 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.221 0.779 29 H 0.238 0.762 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.155 4.205 -0.023 18.635 hybrid contribution 0.485 -0.360 0.012 0.604 sum -17.669 3.845 -0.011 18.083 Atomic orbital electron populations 1.22967 0.78996 1.03447 1.01040 1.86059 1.20797 1.27026 1.89494 1.18406 0.91333 0.84029 1.00292 1.20782 0.99411 0.91608 1.10205 1.20108 0.91193 0.97650 1.06951 1.17057 0.90761 0.84613 1.01562 1.42319 1.09924 1.03478 1.86175 1.18279 0.83170 0.91945 1.01347 1.86112 1.13496 1.31559 1.88407 1.22482 0.92569 0.85208 1.02304 1.19330 0.85921 0.86478 0.85656 1.90550 1.79239 1.21114 1.55120 1.41698 1.06021 1.07399 1.64036 1.19719 0.80172 0.95123 1.48079 0.87689 1.25293 1.00908 0.94580 0.96967 1.69614 1.36039 0.98355 1.49888 0.85809 0.81544 0.78190 0.78477 1.20288 1.20825 1.19306 1.20262 0.92643 0.97214 1.11734 0.92960 0.92955 0.88659 0.85744 0.85541 0.77937 0.76243 0.90402 0.90409 0.77213 0.91675 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.12 10.50 -19.72 -0.21 -4.33 16 3 C 0.11 1.46 6.68 -39.25 -0.26 1.20 16 4 C -0.20 -2.39 9.03 -39.42 -0.36 -2.74 16 5 C -0.14 -1.63 9.89 -39.42 -0.39 -2.02 16 6 C 0.16 2.36 6.77 -83.47 -0.57 1.79 16 7 N -0.88 -11.12 9.10 32.55 0.30 -10.82 16 8 C 0.10 1.69 6.70 -39.10 -0.26 1.42 16 9 O -0.28 -5.44 8.91 -39.67 -0.35 -5.79 16 10 C 0.05 1.00 5.22 36.01 0.19 1.19 16 11 C 0.44 10.72 7.86 -10.99 -0.09 10.63 16 12 O -0.58 -16.17 16.08 -14.37 -0.23 -16.40 16 13 N -0.55 -14.06 5.29 -10.96 -0.06 -14.12 16 14 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 15 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 16 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 17 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 18 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 C -0.20 -3.04 8.97 -39.32 -0.35 -3.39 16 23 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 24 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.12 1.14 6.28 -52.49 -0.33 0.81 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.39 3.70 8.85 -40.82 -0.36 3.34 16 29 H 0.41 5.80 8.19 -40.82 -0.33 5.47 16 30 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16 31 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16 32 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.14 2.01 6.30 -52.49 -0.33 1.68 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -32.65 299.74 -5.30 -37.94 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -3.62 Total: 15.27 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.34 Total: 1.36 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.96 Total: -48.38 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.79 Total: -26.53 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.65 -5.30 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224815389.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.259 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds