Wall clock time and date at job start Mon Mar 30 2020 04:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35993 * 116.99714 * 2 1 4 4 C 1.38691 * 119.96712 * 359.97438 * 3 2 1 5 5 C 1.38231 * 120.10215 * 180.02562 * 4 3 2 6 6 C 1.38675 * 120.03103 * 0.25995 * 5 4 3 7 7 N 1.40229 * 120.03079 * 179.69749 * 6 5 4 8 8 C 1.39277 * 119.93436 * 359.47190 * 6 5 4 9 9 O 1.36007 * 120.05362 * 180.25610 * 8 6 5 10 10 C 1.42900 * 116.99716 * 180.29190 * 9 8 6 11 11 C 1.50704 * 109.46986 * 179.97438 * 10 9 8 12 12 O 1.21294 * 119.99556 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00380 * 180.02562 * 11 10 9 14 14 C 1.37101 * 120.00430 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99282 * 359.97438 * 14 13 11 16 16 C 1.38943 * 120.00211 * 179.97438 * 14 13 11 17 17 N 1.31421 * 120.00091 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00102 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47043 * 90.00186 * 18 16 14 20 20 H 1.48499 * 109.47145 * 210.00011 * 18 16 14 21 21 H 1.48501 * 109.47075 * 330.00009 * 18 16 14 22 22 C 1.38498 * 119.89433 * 0.54429 * 8 6 5 23 23 H 1.09005 * 109.47350 * 300.00243 * 1 2 3 24 24 H 1.08999 * 109.47001 * 60.00513 * 1 2 3 25 25 H 1.09000 * 109.46812 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.94574 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.97896 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00350 * 359.97438 * 7 6 5 29 29 H 0.97001 * 119.99975 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47415 * 299.99629 * 10 9 8 31 31 H 1.09002 * 109.47236 * 60.00280 * 10 9 8 32 32 H 0.97005 * 119.99515 * 359.97438 * 13 11 10 33 33 H 0.96994 * 119.99852 * 180.02562 * 17 16 14 34 34 H 1.07997 * 120.01616 * 179.72577 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2903 2.3744 -0.0005 5 6 1.9149 3.6076 -0.0011 6 6 3.2995 3.6842 -0.0065 7 7 3.9331 4.9352 -0.0135 8 6 4.0602 2.5176 -0.0003 9 8 5.4183 2.5900 -0.0004 10 6 6.1339 1.3530 -0.0003 11 6 7.6153 1.6297 -0.0010 12 8 8.0185 2.7736 -0.0020 13 7 8.4920 0.6061 -0.0016 14 6 9.8397 0.8578 -0.0018 15 1 10.1987 1.8764 -0.0018 16 6 10.7436 -0.1975 -0.0018 17 7 10.3066 -1.4369 -0.0023 18 14 12.5798 0.1455 -0.0027 19 1 13.0670 0.2367 1.3971 20 1 13.2887 -0.9557 -0.7027 21 1 12.8435 1.4281 -0.7033 22 6 3.4314 1.2835 -0.0001 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2118 2.3162 -0.0005 27 1 1.3241 4.5117 -0.0019 28 1 3.4029 5.7475 -0.0149 29 1 4.9016 4.9883 -0.0169 30 1 5.8711 0.7813 0.8897 31 1 5.8710 0.7812 -0.8903 32 1 8.1695 -0.3087 -0.0012 33 1 10.9376 -2.1735 -0.0020 34 1 4.0193 0.3776 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224815389.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:49 Heat of formation + Delta-G solvation = -106.533916 kcal Electronic energy + Delta-G solvation = -19374.693317 eV Core-core repulsion = 16079.422453 eV Total energy + Delta-G solvation = -3295.270864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49778 -40.35430 -39.44837 -37.69262 -36.02837 -34.64115 -33.40019 -31.38429 -30.16418 -28.73079 -27.57359 -26.57184 -23.65395 -22.62731 -21.30516 -20.06018 -19.67671 -18.28049 -17.75496 -17.55900 -17.24633 -17.20573 -16.59459 -16.45650 -15.99588 -15.79885 -15.29826 -15.15798 -14.84913 -14.15755 -13.75775 -13.61748 -13.55809 -13.03793 -12.95300 -12.89068 -12.47584 -12.46369 -12.12415 -11.99544 -11.81574 -11.57531 -10.70495 -10.46771 -10.10775 -9.52514 -8.52097 -7.95772 -6.02544 0.37511 0.66307 1.36056 1.41747 1.54321 1.87656 1.89085 2.34019 2.49755 2.85111 3.11883 3.13616 3.26142 3.88866 3.96394 4.16175 4.21953 4.25672 4.29234 4.50408 4.51272 4.60077 4.65518 4.82902 5.01121 5.20124 5.36722 5.43338 5.61909 5.88562 6.21187 6.49639 6.52904 6.74169 7.03828 7.10103 7.41585 7.95922 8.65081 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029449 B = 0.003891 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.575984 B = 7193.715134 C = 8123.839520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.095 3.905 4 C -0.188 4.188 5 C -0.126 4.126 6 C 0.149 3.851 7 N -0.873 5.873 8 C 0.067 3.933 9 O -0.309 6.309 10 C 0.068 3.932 11 C 0.437 3.563 12 O -0.620 6.620 13 N -0.559 5.559 14 C -0.339 4.339 15 H 0.082 0.918 16 C -0.008 4.008 17 N -0.915 5.915 18 Si 0.997 3.003 19 H -0.269 1.269 20 H -0.268 1.268 21 H -0.272 1.272 22 C -0.211 4.211 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.113 0.887 26 H 0.159 0.841 27 H 0.161 0.839 28 H 0.408 0.592 29 H 0.399 0.601 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.400 0.600 33 H 0.281 0.719 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.613 3.494 0.001 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.049 3.951 4 C -0.207 4.207 5 C -0.149 4.149 6 C 0.045 3.955 7 N -0.416 5.416 8 C 0.018 3.982 9 O -0.222 6.222 10 C -0.010 4.010 11 C 0.224 3.776 12 O -0.507 6.507 13 N -0.196 5.196 14 C -0.468 4.468 15 H 0.100 0.900 16 C -0.209 4.209 17 N -0.555 5.555 18 Si 0.820 3.180 19 H -0.194 1.194 20 H -0.193 1.193 21 H -0.197 1.197 22 C -0.231 4.231 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.132 0.868 26 H 0.176 0.824 27 H 0.178 0.822 28 H 0.238 0.762 29 H 0.227 0.773 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.073 3.976 -0.006 20.463 hybrid contribution 0.879 -0.308 0.008 0.932 sum -19.194 3.668 0.002 19.542 Atomic orbital electron populations 1.23306 0.76576 1.05261 1.02298 1.86035 1.23345 1.26727 1.89404 1.18544 0.91062 0.85194 1.00338 1.21194 1.01044 0.90718 1.07777 1.20528 0.90273 0.99161 1.04983 1.17389 0.91757 0.84491 1.01861 1.42301 1.09569 1.03820 1.85959 1.18532 0.81929 0.93375 1.04317 1.86042 1.15336 1.31366 1.89488 1.22232 0.88700 0.85807 1.04291 1.20235 0.88154 0.85505 0.83752 1.90507 1.80669 1.22825 1.56728 1.41726 1.05713 1.07949 1.64221 1.19709 0.81763 0.94663 1.50705 0.90004 1.26101 1.04947 0.94136 0.95676 1.69671 1.37664 0.98926 1.49282 0.84871 0.76182 0.78142 0.78800 1.19441 1.19300 1.19657 1.20340 0.93781 0.96738 1.12261 0.91609 0.91604 0.86827 0.82385 0.82158 0.76176 0.77343 0.88284 0.88299 0.76556 0.90968 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.13 10.50 -93.47 -0.98 -9.12 16 3 C 0.10 2.47 6.68 22.49 0.15 2.62 16 4 C -0.19 -3.87 9.03 22.38 0.20 -3.67 16 5 C -0.13 -2.67 9.89 22.37 0.22 -2.45 16 6 C 0.15 4.13 6.77 38.15 0.26 4.39 16 7 N -0.87 -21.64 9.10 -50.94 -0.46 -22.10 16 8 C 0.07 2.22 6.70 22.58 0.15 2.37 16 9 O -0.31 -12.15 8.91 -74.59 -0.66 -12.82 16 10 C 0.07 2.61 5.22 71.24 0.37 2.99 16 11 C 0.44 21.93 7.86 87.66 0.69 22.62 16 12 O -0.62 -36.35 16.08 15.96 0.26 -36.09 16 13 N -0.56 -29.18 5.29 -306.99 -1.62 -30.80 16 14 C -0.34 -19.40 9.68 84.04 0.81 -18.59 16 15 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 16 C -0.01 -0.42 5.50 84.92 0.47 0.04 16 17 N -0.92 -49.03 13.05 21.66 0.28 -48.74 16 18 Si 1.00 42.59 29.55 68.60 2.03 44.62 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 22 C -0.21 -6.38 8.97 22.44 0.20 -6.18 16 23 H 0.07 0.70 7.66 -2.38 -0.02 0.68 16 24 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.16 2.14 6.28 -2.91 -0.02 2.12 16 27 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.41 7.11 8.85 -92.71 -0.82 6.29 16 29 H 0.40 11.58 8.19 -92.71 -0.76 10.82 16 30 H 0.10 3.33 7.66 -2.39 -0.02 3.31 16 31 H 0.10 3.32 7.66 -2.39 -0.02 3.31 16 32 H 0.40 19.56 7.90 -92.70 -0.73 18.83 16 33 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.14 3.96 6.30 -2.91 -0.02 3.94 16 Total: -1.00 -71.92 299.74 2.34 -69.58 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: -1.13 Total: 39.95 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.64 Total: 5.52 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -1.80 Total: -101.64 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -1.39 Total: -58.03 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -71.92 2.34 -69.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224815389.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.951 kcal (2) G-P(sol) polarization free energy of solvation -71.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds