Wall clock time and date at job start Mon Mar 30 2020 05:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35311 * 126.12159 * 2 1 4 4 C 1.50702 * 126.04475 * 359.93966 * 3 2 1 5 5 N 1.46498 * 109.46991 * 80.00054 * 4 3 2 6 6 C 1.34774 * 119.99958 * 180.02562 * 5 4 3 7 7 O 1.21447 * 119.99873 * 359.97438 * 6 5 4 8 8 C 1.48829 * 120.00267 * 180.02562 * 6 5 4 9 9 O 1.21504 * 119.99629 * 359.97438 * 8 6 5 10 10 N 1.34771 * 120.00223 * 179.97438 * 8 6 5 11 11 C 1.36125 * 120.00018 * 179.97438 * 10 8 6 12 12 H 1.07997 * 120.00314 * 0.02562 * 11 10 8 13 13 C 1.39583 * 119.99906 * 180.02562 * 11 10 8 14 14 N 1.31015 * 120.00313 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00067 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47152 * 89.99866 * 15 13 11 17 17 H 1.48500 * 109.47418 * 210.00445 * 15 13 11 18 18 H 1.48508 * 109.47078 * 330.00630 * 15 13 11 19 19 C 1.39872 * 107.91683 * 179.97438 * 3 2 1 20 20 N 1.30828 * 108.20306 * 359.97438 * 19 3 2 21 21 N 1.34940 * 126.13005 * 179.68744 * 2 1 3 22 22 C 1.46503 * 126.03754 * 0.03469 * 21 2 1 23 23 H 1.08999 * 109.47015 * 90.00502 * 1 2 3 24 24 H 1.09000 * 109.46646 * 209.99654 * 1 2 3 25 25 H 1.09000 * 109.47248 * 330.00372 * 1 2 3 26 26 H 1.09004 * 109.47120 * 200.00381 * 4 3 2 27 27 H 1.09004 * 109.47157 * 320.00123 * 4 3 2 28 28 H 0.96996 * 120.00044 * 0.02562 * 5 4 3 29 29 H 0.97003 * 120.00449 * 0.02562 * 10 8 6 30 30 H 0.96999 * 120.00373 * 179.97438 * 14 13 11 31 31 H 1.08009 * 125.89832 * 179.97438 * 19 3 2 32 32 H 1.08999 * 109.47072 * 89.99750 * 22 21 2 33 33 H 1.08995 * 109.47552 * 210.00247 * 22 21 2 34 34 H 1.09005 * 109.47194 * 330.00181 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0013 5 7 1.4642 2.9198 1.3584 6 6 1.0170 4.1681 1.5997 7 8 0.9286 4.9679 0.6900 8 6 0.6325 4.5668 2.9811 9 8 0.7213 3.7668 3.8912 10 7 0.1858 5.8152 3.2224 11 6 -0.1664 6.1797 4.4858 12 1 -0.0875 5.4686 5.2948 13 6 -0.6296 7.4725 4.7357 14 7 -0.7258 8.3351 3.7542 15 14 -1.1122 7.9730 6.4695 16 1 0.0722 8.5287 7.1721 17 1 -2.1800 9.0031 6.4083 18 1 -1.6124 6.7847 7.2066 19 6 3.6334 0.6560 0.0006 20 7 3.6334 -0.6523 0.0015 21 7 2.3027 -1.0899 0.0059 22 6 1.8541 -2.4845 0.0128 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 2.6515 3.1690 -0.3526 27 1 0.9830 2.6320 -0.6627 28 1 1.5351 2.2812 2.0849 29 1 0.1145 6.4539 2.4958 30 1 -1.0481 9.2334 3.9278 31 1 4.5084 1.2893 0.0004 32 1 1.7433 -2.8356 -1.0131 33 1 2.5897 -3.1003 0.5302 34 1 0.8953 -2.5552 0.5266 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226243293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:55 Heat of formation + Delta-G solvation = -23.901468 kcal Electronic energy + Delta-G solvation = -19385.074299 eV Core-core repulsion = 16125.679398 eV Total energy + Delta-G solvation = -3259.394901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38993 -41.14153 -39.07854 -36.59178 -35.87525 -34.37552 -33.46270 -32.89234 -29.60956 -27.82440 -27.59812 -26.08949 -23.99949 -21.92940 -21.15324 -20.55864 -20.24956 -18.77855 -17.62521 -17.38588 -16.82882 -16.59508 -16.48349 -15.89159 -15.70344 -15.25223 -15.09560 -14.64233 -14.34066 -14.03391 -13.86377 -13.64960 -13.45591 -13.24351 -13.13249 -12.94750 -12.78391 -12.54862 -12.27164 -12.08741 -11.64946 -11.64014 -10.27473 -10.24880 -10.24560 -10.12922 -9.43713 -8.63036 -6.07998 0.66212 0.78682 1.41020 1.47667 1.49371 1.58993 1.60324 2.12280 2.38566 2.42376 3.18807 3.40116 3.54640 3.71399 4.05038 4.09075 4.16824 4.35840 4.41314 4.43557 4.64482 4.70235 4.74556 4.94106 5.04775 5.16899 5.27865 5.35735 5.59386 5.71871 6.05508 6.22598 6.44365 6.65918 6.85111 7.06854 7.32534 7.84175 8.52755 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.039954 B = 0.003597 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.631072 B = 7782.557398 C = 8003.987901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.112 3.888 3 C -0.280 4.280 4 C 0.206 3.794 5 N -0.688 5.688 6 C 0.520 3.480 7 O -0.566 6.566 8 C 0.391 3.609 9 O -0.618 6.618 10 N -0.512 5.512 11 C -0.346 4.346 12 H 0.098 0.902 13 C -0.005 4.005 14 N -0.896 5.896 15 Si 1.009 2.991 16 H -0.266 1.266 17 H -0.267 1.267 18 H -0.264 1.264 19 C 0.062 3.938 20 N -0.329 5.329 21 N -0.375 5.375 22 C 0.089 3.911 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.411 0.589 29 H 0.401 0.599 30 H 0.288 0.712 31 H 0.200 0.800 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.803 -17.041 -8.332 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.018 4.018 3 C -0.292 4.292 4 C 0.083 3.917 5 N -0.340 5.340 6 C 0.303 3.697 7 O -0.445 6.445 8 C 0.176 3.824 9 O -0.508 6.508 10 N -0.146 5.146 11 C -0.475 4.475 12 H 0.116 0.884 13 C -0.209 4.209 14 N -0.534 5.534 15 Si 0.830 3.170 16 H -0.191 1.191 17 H -0.191 1.191 18 H -0.188 1.188 19 C -0.123 4.123 20 N -0.150 5.150 21 N -0.157 5.157 22 C -0.051 4.051 23 H 0.120 0.880 24 H 0.114 0.886 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.247 0.753 29 H 0.236 0.764 30 H 0.099 0.901 31 H 0.217 0.783 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.433 -18.054 -8.460 20.086 hybrid contribution -0.431 1.187 0.556 1.380 sum 2.002 -16.867 -7.904 18.734 Atomic orbital electron populations 1.20646 0.85121 1.04865 1.04876 1.21351 0.95816 0.86806 0.97871 1.19744 0.93229 0.94491 1.21717 1.19488 1.00165 0.90161 0.81885 1.45859 1.64179 1.11800 1.12146 1.20003 0.77968 0.83226 0.88547 1.90685 1.55253 1.52034 1.46552 1.19694 0.88900 0.84318 0.89537 1.90547 1.61926 1.51844 1.46500 1.41648 1.51423 1.10708 1.10783 1.19964 1.42839 0.98250 0.86489 0.88427 1.26515 0.95246 0.94582 1.04533 1.69548 1.42610 1.06684 1.34563 0.84710 0.78496 0.78379 0.75419 1.19080 1.19117 1.18786 1.24128 0.98255 0.92073 0.97879 1.77333 0.97921 1.13261 1.26509 1.48791 1.03361 1.07389 1.56152 1.22231 1.02296 0.75674 1.04871 0.88029 0.88622 0.90483 0.90498 0.90488 0.75263 0.76434 0.90141 0.78344 0.89067 0.88884 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.90 71.24 0.70 -0.74 16 2 C 0.11 2.33 6.93 41.41 0.29 2.61 16 3 C -0.28 -6.73 5.47 -20.14 -0.11 -6.84 16 4 C 0.21 5.58 5.67 85.63 0.49 6.06 16 5 N -0.69 -23.23 5.54 -468.73 -2.60 -25.83 16 6 C 0.52 22.51 7.87 87.08 0.69 23.19 16 7 O -0.57 -26.33 16.47 -3.55 -0.06 -26.39 16 8 C 0.39 20.05 7.82 87.08 0.68 20.73 16 9 O -0.62 -33.78 16.03 -3.73 -0.06 -33.84 16 10 N -0.51 -28.12 5.25 -308.88 -1.62 -29.74 16 11 C -0.35 -19.49 9.67 84.35 0.82 -18.68 16 12 H 0.10 5.66 7.15 -2.91 -0.02 5.64 16 13 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 14 N -0.90 -48.21 13.03 21.76 0.28 -47.93 16 15 Si 1.01 40.79 29.56 68.60 2.03 42.82 16 16 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 18 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 19 C 0.06 1.50 11.96 85.24 1.02 2.51 16 20 N -0.33 -8.31 12.57 -57.02 -0.72 -9.03 16 21 N -0.38 -7.64 4.01 -356.03 -1.43 -9.07 16 22 C 0.09 0.95 11.27 127.77 1.44 2.39 16 23 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 0.97 7.07 -2.39 -0.02 0.96 16 25 H 0.08 1.44 7.89 -2.39 -0.02 1.42 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 2.02 8.13 -2.39 -0.02 2.00 16 28 H 0.41 13.75 7.92 -92.71 -0.73 13.02 16 29 H 0.40 22.25 7.35 -92.71 -0.68 21.56 16 30 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 31 H 0.20 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 0.65 7.05 -2.38 -0.02 0.64 16 Total: -1.00 -71.22 307.33 2.05 -69.17 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.26 Total: 38.35 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: 6.48 Total: 31.48 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -6.08 Total: -121.59 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -0.12 Total: -60.23 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -71.22 2.05 -69.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226243293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.273 kcal (2) G-P(sol) polarization free energy of solvation -71.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds