Wall clock time and date at job start Mon Mar 30 2020 04:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00003 * 2 1 4 4 H 1.48503 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47355 * 300.00191 * 3 2 1 6 6 H 1.48506 * 109.46500 * 60.00298 * 3 2 1 7 7 C 1.37878 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.34770 * 119.99943 * 180.02562 * 10 9 7 12 12 O 1.21486 * 120.00500 * 359.97438 * 11 10 9 13 13 C 1.48458 * 120.00108 * 179.97438 * 11 10 9 14 14 N 1.30665 * 126.40357 * 0.02562 * 13 11 10 15 15 O 1.21288 * 110.10809 * 180.02562 * 14 13 11 16 16 C 1.33691 * 110.01638 * 359.97438 * 15 14 13 17 17 C 1.50696 * 126.44448 * 179.97438 * 16 15 14 18 18 H 1.09006 * 109.90424 * 196.12778 * 17 16 15 19 19 C 1.53997 * 109.91589 * 75.03363 * 17 16 15 20 20 C 1.54599 * 105.13815 * 239.42059 * 19 17 16 21 21 C 1.54937 * 103.08133 * 337.95045 * 20 19 17 22 22 N 1.47896 * 109.92335 * 317.44155 * 17 16 15 23 23 N 1.30946 * 107.10538 * 0.24534 * 16 15 14 24 24 H 0.96998 * 119.99658 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47297 * 59.99686 * 9 7 2 26 26 H 1.09006 * 109.46888 * 300.00144 * 9 7 2 27 27 H 0.96996 * 119.99904 * 359.97438 * 10 9 7 28 28 H 1.08999 * 110.31386 * 120.50419 * 19 17 16 29 29 H 1.09005 * 110.39145 * 358.37304 * 19 17 16 30 30 H 1.09002 * 110.72617 * 96.39862 * 20 19 17 31 31 H 1.08997 * 110.72339 * 219.50901 * 20 19 17 32 32 H 1.09000 * 110.66912 * 155.93889 * 21 20 19 33 33 H 1.09003 * 110.66687 * 279.06779 * 21 20 19 34 34 H 1.00898 * 110.99850 * 24.16496 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 1.7539 -4.8833 -0.0029 12 8 0.5595 -5.1054 -0.0039 13 6 2.7186 -6.0117 -0.0032 14 7 4.0219 -5.9177 -0.0018 15 8 4.5197 -7.0237 -0.0031 16 6 3.5620 -7.9566 -0.0050 17 6 3.7667 -9.4496 -0.0076 18 1 2.8417 -9.9504 -0.2934 19 6 4.2080 -9.9210 1.3905 20 6 5.5843 -10.5912 1.1748 21 6 5.5620 -10.9616 -0.3295 22 7 4.8501 -9.8081 -0.9483 23 7 2.4129 -7.3288 -0.0101 24 1 -0.4849 0.8401 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8880 27 1 3.1567 -3.4354 -0.0010 28 1 3.4944 -10.6420 1.7894 29 1 4.3031 -9.0705 2.0656 30 1 6.3920 -9.8910 1.3877 31 1 5.6786 -11.4855 1.7907 32 1 6.5762 -11.0465 -0.7199 33 1 5.0083 -11.8867 -0.4898 34 1 5.4773 -9.0307 -1.0907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226400728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:17 Heat of formation + Delta-G solvation = 35.335394 kcal Electronic energy + Delta-G solvation = -19361.878627 eV Core-core repulsion = 16105.052429 eV Total energy + Delta-G solvation = -3256.826198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -45.77914 -39.20340 -38.92178 -35.76794 -34.42834 -33.09722 -32.29620 -30.53685 -29.35168 -27.74401 -25.32840 -23.92593 -22.91106 -22.07358 -21.37203 -19.97267 -18.56453 -18.28492 -17.14953 -16.81620 -15.89987 -15.78636 -15.24687 -14.80403 -14.55692 -14.41661 -14.34097 -13.39839 -13.11835 -12.75788 -12.46460 -12.18522 -12.14971 -12.07337 -11.68593 -11.55502 -11.29827 -11.16349 -11.01742 -10.95619 -10.40310 -10.23744 -9.70123 -9.46386 -9.27250 -8.84407 -8.10794 -6.22781 -4.30378 0.82251 1.69017 2.42679 2.97677 3.21489 3.28855 3.32620 3.50773 3.57779 3.82928 4.14799 4.21729 4.28503 4.35368 4.55241 4.87009 4.94036 5.09202 5.13828 5.22772 5.35574 5.39858 5.42530 5.45406 5.64751 5.82368 6.04288 6.68096 7.09496 7.14938 7.37240 7.53864 7.84543 7.91244 8.38578 8.58045 8.82360 9.35841 10.87426 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.048470 B = 0.003354 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.539614 B = 8345.469296 C = 8691.085932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.249 3.751 10 N -0.685 5.685 11 C 0.587 3.413 12 O -0.513 6.513 13 C 0.149 3.851 14 N -0.346 5.346 15 O 0.089 5.911 16 C 0.164 3.836 17 C 0.173 3.827 18 H 0.135 0.865 19 C -0.146 4.146 20 C -0.158 4.158 21 C 0.042 3.958 22 N -0.664 5.664 23 N -0.428 5.428 24 H 0.267 0.733 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.399 0.601 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.303 -21.254 1.623 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.129 3.871 10 N -0.334 5.334 11 C 0.365 3.635 12 O -0.387 6.387 13 C -0.126 4.126 14 N -0.052 5.052 15 O 0.023 5.977 16 C -0.058 4.058 17 C 0.062 3.938 18 H 0.152 0.848 19 C -0.187 4.187 20 C -0.197 4.197 21 C -0.087 4.087 22 N -0.294 5.294 23 N -0.161 5.161 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.233 0.767 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.730 -20.736 1.107 23.849 hybrid contribution 1.399 1.338 0.786 2.089 sum 13.129 -19.397 1.893 23.499 Atomic orbital electron populations 1.69980 1.06113 1.27421 1.48595 1.24947 0.94956 0.99520 0.94482 0.86309 0.79854 0.82654 0.77821 1.19544 1.20681 1.20702 1.21216 0.93452 0.90074 1.53682 0.91597 1.19334 0.88046 0.81237 0.98462 1.46397 1.12221 1.04723 1.70107 1.16495 0.85806 0.81225 0.79932 1.90808 1.14265 1.83650 1.49934 1.26229 0.89652 0.93633 1.03046 1.74947 1.11158 1.01144 1.17962 1.85226 1.36637 1.10770 1.65044 1.29007 0.82226 0.96990 0.97596 1.21105 0.99673 0.80042 0.93005 0.84785 1.22924 0.98080 1.01768 0.95882 1.23149 0.96775 1.01419 0.98350 1.23304 0.99138 0.94809 0.91472 1.63116 1.13329 1.10496 1.42432 1.72013 1.24667 1.02455 1.16916 0.92335 0.94702 0.94726 0.76749 0.89142 0.90508 0.90819 0.89938 0.89705 0.89287 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.55 -14.91 9.28 -34.44 -0.32 -15.23 16 8 H 0.07 1.70 7.60 -52.49 -0.40 1.30 16 9 C 0.25 6.65 5.43 -5.19 -0.03 6.62 16 10 N -0.69 -15.46 5.55 -62.23 -0.35 -15.80 16 11 C 0.59 13.15 7.85 -12.05 -0.09 13.05 16 12 O -0.51 -13.17 17.10 5.38 0.09 -13.08 16 13 C 0.15 2.82 8.01 -156.18 -1.25 1.57 16 14 N -0.35 -5.69 11.89 30.93 0.37 -5.32 16 15 O 0.09 1.18 10.76 17.98 0.19 1.37 16 16 C 0.16 2.08 6.97 -13.00 -0.09 1.99 16 17 C 0.17 1.47 3.96 -67.80 -0.27 1.21 16 18 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 19 C -0.15 -0.94 6.56 -25.37 -0.17 -1.11 16 20 C -0.16 -0.73 7.05 -24.87 -0.18 -0.91 16 21 C 0.04 0.20 7.59 -1.63 -0.01 0.19 16 22 N -0.66 -4.94 7.40 -103.98 -0.77 -5.71 16 23 N -0.43 -7.30 11.57 -9.94 -0.11 -7.41 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.40 8.11 8.05 -40.82 -0.33 7.78 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.58 7.68 -51.93 -0.40 0.18 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.35 2.55 7.99 -39.29 -0.31 2.23 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -32.53 301.31 -6.78 -39.31 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.96 Total: 2.31 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -2.50 Total: 9.09 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.13 Total: -59.40 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.29 Total: -11.71 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.53 -6.78 -39.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226400728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.650 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds