Wall clock time and date at job start Mon Mar 30 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00003 * 2 1 4 4 H 1.48503 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47355 * 300.00191 * 3 2 1 6 6 H 1.48506 * 109.46500 * 60.00298 * 3 2 1 7 7 C 1.37878 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.34770 * 119.99943 * 180.02562 * 10 9 7 12 12 O 1.21486 * 120.00500 * 359.97438 * 11 10 9 13 13 C 1.48458 * 120.00108 * 179.97438 * 11 10 9 14 14 N 1.30665 * 126.40357 * 0.02562 * 13 11 10 15 15 O 1.21288 * 110.10809 * 180.02562 * 14 13 11 16 16 C 1.33691 * 110.01638 * 359.97438 * 15 14 13 17 17 C 1.50696 * 126.44448 * 179.97438 * 16 15 14 18 18 H 1.09006 * 109.90424 * 196.12778 * 17 16 15 19 19 C 1.53997 * 109.91589 * 75.03363 * 17 16 15 20 20 C 1.54599 * 105.13815 * 239.42059 * 19 17 16 21 21 C 1.54937 * 103.08133 * 337.95045 * 20 19 17 22 22 N 1.47896 * 109.92335 * 317.44155 * 17 16 15 23 23 N 1.30946 * 107.10538 * 0.24534 * 16 15 14 24 24 H 0.96998 * 119.99658 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47297 * 59.99686 * 9 7 2 26 26 H 1.09006 * 109.46888 * 300.00144 * 9 7 2 27 27 H 0.96996 * 119.99904 * 359.97438 * 10 9 7 28 28 H 1.08999 * 110.31386 * 120.50419 * 19 17 16 29 29 H 1.09005 * 110.39145 * 358.37304 * 19 17 16 30 30 H 1.09002 * 110.72617 * 96.39862 * 20 19 17 31 31 H 1.08997 * 110.72339 * 219.50901 * 20 19 17 32 32 H 1.09000 * 110.66912 * 155.93889 * 21 20 19 33 33 H 1.09003 * 110.66687 * 279.06779 * 21 20 19 34 34 H 1.00898 * 110.99850 * 24.16496 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 1.7539 -4.8833 -0.0029 12 8 0.5595 -5.1054 -0.0039 13 6 2.7186 -6.0117 -0.0032 14 7 4.0219 -5.9177 -0.0018 15 8 4.5197 -7.0237 -0.0031 16 6 3.5620 -7.9566 -0.0050 17 6 3.7667 -9.4496 -0.0076 18 1 2.8417 -9.9504 -0.2934 19 6 4.2080 -9.9210 1.3905 20 6 5.5843 -10.5912 1.1748 21 6 5.5620 -10.9616 -0.3295 22 7 4.8501 -9.8081 -0.9483 23 7 2.4129 -7.3288 -0.0101 24 1 -0.4849 0.8401 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8880 27 1 3.1567 -3.4354 -0.0010 28 1 3.4944 -10.6420 1.7894 29 1 4.3031 -9.0705 2.0656 30 1 6.3920 -9.8910 1.3877 31 1 5.6786 -11.4855 1.7907 32 1 6.5762 -11.0465 -0.7199 33 1 5.0083 -11.8867 -0.4898 34 1 5.4773 -9.0307 -1.0907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226400728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:15 Heat of formation + Delta-G solvation = 7.293935 kcal Electronic energy + Delta-G solvation = -19363.094596 eV Core-core repulsion = 16105.052429 eV Total energy + Delta-G solvation = -3258.042167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -47.08310 -40.81079 -39.74411 -37.10654 -36.42538 -34.71355 -33.93648 -31.03663 -30.20469 -29.64185 -26.99204 -25.00685 -24.65345 -23.09404 -22.12890 -21.45398 -19.88981 -19.56372 -18.70949 -17.95073 -17.67608 -17.07377 -16.48418 -16.37395 -16.30223 -15.43117 -15.06210 -14.82273 -14.23484 -14.17650 -13.98282 -13.88538 -13.33004 -13.01248 -12.81018 -12.74859 -12.62101 -12.52635 -12.30250 -12.10246 -11.64556 -11.60260 -11.51872 -11.41908 -10.91008 -10.16500 -9.82356 -8.35273 -6.52683 -0.46068 0.35639 1.35113 1.40246 1.42750 1.47275 1.57748 1.79443 2.34145 2.44119 2.77836 3.00062 3.16600 3.55413 3.68326 3.81201 3.94029 4.18977 4.43963 4.48795 4.59488 4.79060 4.92072 4.92755 5.03172 5.09122 5.09416 5.16782 5.26883 5.47766 5.55655 5.71652 6.14122 6.35914 6.53978 6.74045 6.89815 7.20519 8.77090 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.048470 B = 0.003354 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.539614 B = 8345.469296 C = 8691.085932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.082 0.918 9 C 0.265 3.735 10 N -0.679 5.679 11 C 0.590 3.410 12 O -0.554 6.554 13 C 0.124 3.876 14 N -0.341 5.341 15 O 0.118 5.882 16 C 0.191 3.809 17 C 0.174 3.826 18 H 0.139 0.861 19 C -0.145 4.145 20 C -0.150 4.150 21 C 0.043 3.957 22 N -0.673 5.673 23 N -0.460 5.460 24 H 0.272 0.728 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.411 0.589 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.130 -22.338 1.813 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.810 3.190 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.599 4.599 8 H 0.100 0.900 9 C 0.144 3.856 10 N -0.329 5.329 11 C 0.371 3.629 12 O -0.430 6.430 13 C -0.149 4.149 14 N -0.043 5.043 15 O 0.045 5.955 16 C -0.030 4.030 17 C 0.062 3.938 18 H 0.156 0.844 19 C -0.185 4.185 20 C -0.189 4.189 21 C -0.085 4.085 22 N -0.304 5.304 23 N -0.192 5.192 24 H 0.081 0.919 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.247 0.753 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 14.577 -21.828 1.299 26.280 hybrid contribution 0.581 1.487 0.720 1.751 sum 15.158 -20.341 2.018 25.448 Atomic orbital electron populations 1.70121 1.08147 1.28816 1.49348 1.26035 0.95836 1.03776 0.93526 0.85074 0.78929 0.77095 0.77907 1.17912 1.20170 1.20157 1.21557 0.94288 0.90241 1.53815 0.89979 1.18847 0.88282 0.83010 0.95487 1.46091 1.12166 1.04265 1.70420 1.16775 0.85948 0.81800 0.78341 1.90771 1.16337 1.84481 1.51448 1.25391 0.89765 0.93285 1.06486 1.74923 1.09932 1.02586 1.16869 1.85212 1.36103 1.10188 1.63947 1.29824 0.80685 0.98112 0.94411 1.21459 1.00664 0.76762 0.94876 0.84357 1.22969 0.99690 1.01794 0.94051 1.23130 0.95407 1.01936 0.98461 1.23425 0.99811 0.93935 0.91374 1.63195 1.13558 1.11207 1.42400 1.71970 1.26670 1.01815 1.18780 0.91943 0.97934 0.97894 0.75271 0.87663 0.91628 0.90774 0.88185 0.88179 0.88475 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.99 42.47 29.54 68.60 2.03 44.49 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.56 -30.99 9.28 25.60 0.24 -30.75 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 14.83 5.43 85.63 0.46 15.29 16 10 N -0.68 -31.65 5.55 -469.11 -2.60 -34.25 16 11 C 0.59 27.45 7.85 86.97 0.68 28.14 16 12 O -0.55 -29.94 17.10 -3.67 -0.06 -30.00 16 13 C 0.12 4.72 8.01 137.34 1.10 5.82 16 14 N -0.34 -10.92 11.89 -59.38 -0.71 -11.62 16 15 O 0.12 2.92 10.76 74.41 0.80 3.72 16 16 C 0.19 4.59 6.97 88.36 0.62 5.21 16 17 C 0.17 2.59 3.96 44.31 0.18 2.76 16 18 H 0.14 2.02 8.14 -2.38 -0.02 2.01 16 19 C -0.14 -1.48 6.56 31.48 0.21 -1.28 16 20 C -0.15 -0.89 7.05 31.80 0.22 -0.67 16 21 C 0.04 0.27 7.59 86.56 0.66 0.93 16 22 N -0.67 -8.29 7.40 -482.88 -3.57 -11.86 16 23 N -0.46 -15.64 11.57 -302.79 -3.50 -19.15 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 27 H 0.41 16.88 8.05 -92.71 -0.75 16.13 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.85 7.68 -2.38 -0.02 0.83 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.35 4.21 7.99 -89.70 -0.72 3.50 16 Total: -1.00 -72.45 301.31 -2.82 -75.27 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -0.31 Total: 12.20 kcal Atomic # 6 Polarization: 21.56 SS G_CDS: 4.83 Total: 26.39 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -10.10 Total: -132.06 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -72.45 -2.82 -75.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226400728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.563 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds