Wall clock time and date at job start Mon Mar 30 2020 04:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00075 * 179.97438 * 10 9 7 12 12 O 1.21481 * 119.99668 * 0.02562 * 11 10 9 13 13 C 1.48444 * 120.00134 * 180.02562 * 11 10 9 14 14 N 1.30670 * 126.40594 * 359.69438 * 13 11 10 15 15 O 1.21295 * 110.11085 * 179.84128 * 14 13 11 16 16 C 1.33688 * 110.01227 * 0.42504 * 15 14 13 17 17 C 1.50702 * 126.44559 * 179.75725 * 16 15 14 18 18 H 1.09004 * 110.33136 * 165.77374 * 17 16 15 19 19 C 1.54908 * 110.37415 * 288.14362 * 17 16 15 20 20 C 1.55142 * 101.65146 * 155.89821 * 19 17 16 21 21 C 1.54314 * 103.02049 * 324.34843 * 20 19 17 22 22 N 1.47452 * 107.23503 * 22.28441 * 21 20 19 23 23 N 1.30946 * 107.11045 * 359.73274 * 16 15 14 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 26 26 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 27 27 H 0.97000 * 119.99760 * 0.02562 * 10 9 7 28 28 H 1.08991 * 110.99201 * 273.99381 * 19 17 16 29 29 H 1.09001 * 110.98397 * 37.81090 * 19 17 16 30 30 H 1.08997 * 110.70387 * 205.96885 * 20 19 17 31 31 H 1.08999 * 110.85533 * 82.80206 * 20 19 17 32 32 H 1.09000 * 109.89282 * 262.87568 * 21 20 19 33 33 H 1.09004 * 109.88986 * 141.68829 * 21 20 19 34 34 H 1.00893 * 110.99773 * 238.72237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 5.3251 -2.8215 -0.0001 12 8 6.1144 -1.8981 0.0004 13 6 5.8199 -4.2210 -0.0008 14 7 5.0869 -5.3028 0.0042 15 8 5.7959 -6.2869 -0.0013 16 6 7.0825 -5.9239 -0.0012 17 6 8.2733 -6.8476 -0.0018 18 1 9.1798 -6.2967 -0.2528 19 6 8.4224 -7.5362 1.3778 20 6 9.2107 -8.8191 1.0040 21 6 8.6405 -9.1861 -0.3822 22 7 8.0639 -7.9566 -0.9568 23 7 7.1135 -4.6149 -0.0010 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8746 -0.6807 0.8905 27 1 3.3696 -3.3125 -0.0009 28 1 8.9941 -6.9131 2.0654 29 1 7.4476 -7.7852 1.7972 30 1 9.0160 -9.6144 1.7235 31 1 10.2790 -8.6131 0.9390 32 1 7.8650 -9.9445 -0.2753 33 1 9.4387 -9.5569 -1.0252 34 1 7.0833 -8.0781 -1.1605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226400736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:21 Heat of formation + Delta-G solvation = 38.767388 kcal Electronic energy + Delta-G solvation = -19361.397975 eV Core-core repulsion = 16104.720599 eV Total energy + Delta-G solvation = -3256.677375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.84795 -39.22451 -39.07070 -35.84873 -34.57066 -33.16355 -32.35641 -30.68324 -29.44631 -28.32117 -25.46435 -24.03489 -22.69587 -21.65889 -21.53238 -20.16376 -18.61730 -18.35885 -17.30167 -16.97306 -16.23195 -16.02613 -15.29016 -14.76119 -14.45631 -14.38516 -14.34666 -13.53195 -13.24126 -12.87105 -12.56883 -12.44533 -12.41456 -12.17579 -11.78842 -11.72930 -11.34681 -11.27040 -11.11355 -10.83748 -10.32161 -10.06767 -9.88391 -9.57294 -9.12068 -8.86757 -8.40245 -6.26665 -4.30589 0.74678 1.59327 2.37042 2.86520 3.23445 3.30815 3.36652 3.38633 3.50877 3.78997 4.05855 4.17735 4.21990 4.28510 4.55972 4.82510 4.83668 5.00301 5.07904 5.19058 5.28810 5.33674 5.40149 5.49664 5.64202 5.75451 6.12712 6.62245 6.68922 6.90959 6.92205 7.22827 7.74255 8.01175 8.32496 8.49541 8.72504 9.31005 10.85039 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.055920 B = 0.003410 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.599105 B = 8209.408227 C = 8495.327019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.221 3.779 10 N -0.679 5.679 11 C 0.590 3.410 12 O -0.515 6.515 13 C 0.148 3.852 14 N -0.342 5.342 15 O 0.091 5.909 16 C 0.165 3.835 17 C 0.177 3.823 18 H 0.136 0.864 19 C -0.149 4.149 20 C -0.138 4.138 21 C 0.045 3.955 22 N -0.674 5.674 23 N -0.427 5.427 24 H 0.269 0.731 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.405 0.595 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.857 -19.524 1.594 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.586 4.586 8 H 0.100 0.900 9 C 0.099 3.901 10 N -0.328 5.328 11 C 0.369 3.631 12 O -0.389 6.389 13 C -0.127 4.127 14 N -0.048 5.048 15 O 0.025 5.975 16 C -0.057 4.057 17 C 0.066 3.934 18 H 0.154 0.846 19 C -0.189 4.189 20 C -0.176 4.176 21 C -0.084 4.084 22 N -0.305 5.305 23 N -0.159 5.159 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.240 0.760 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.063 -18.015 1.158 24.840 hybrid contribution -0.644 0.163 0.692 0.959 sum 16.419 -17.852 1.849 24.325 Atomic orbital electron populations 1.69872 1.06210 1.27579 1.48883 1.24770 0.94820 0.99148 0.93694 0.86824 0.80612 0.83152 0.79179 1.19692 1.20715 1.18393 1.21025 0.88056 0.95504 1.54000 0.90016 1.19697 0.95742 0.77113 0.97502 1.46090 1.04234 1.12260 1.70257 1.16460 0.83932 0.83088 0.79588 1.90797 1.55495 1.42581 1.50019 1.26073 0.85940 0.97223 1.03480 1.74972 1.17786 0.94431 1.17567 1.85239 1.16445 1.30931 1.64915 1.28972 0.87685 0.91431 0.97619 1.21243 0.90071 0.89296 0.92778 0.84645 1.23286 1.02204 0.97239 0.96152 1.22783 1.00712 0.97113 0.97035 1.22738 0.99802 0.91382 0.94490 1.62050 1.22794 1.03981 1.41678 1.72001 1.19348 1.07708 1.16889 0.92098 0.94878 0.95364 0.76042 0.89037 0.90211 0.90054 0.90129 0.92041 0.89709 0.83311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.55 -15.11 9.83 -34.44 -0.34 -15.44 16 8 H 0.08 2.36 7.84 -52.49 -0.41 1.95 16 9 C 0.22 5.47 4.50 -5.19 -0.02 5.44 16 10 N -0.68 -14.72 5.55 -62.24 -0.35 -15.07 16 11 C 0.59 12.59 7.85 -12.05 -0.09 12.50 16 12 O -0.52 -12.45 17.10 5.38 0.09 -12.36 16 13 C 0.15 2.68 8.01 -156.18 -1.25 1.43 16 14 N -0.34 -5.48 11.89 30.93 0.37 -5.11 16 15 O 0.09 1.17 10.82 17.99 0.19 1.37 16 16 C 0.17 2.01 7.19 -13.00 -0.09 1.92 16 17 C 0.18 1.45 3.95 -67.34 -0.27 1.18 16 18 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 19 C -0.15 -0.90 6.48 -24.59 -0.16 -1.06 16 20 C -0.14 -0.59 6.94 -24.91 -0.17 -0.76 16 21 C 0.04 0.22 7.58 -2.83 -0.02 0.20 16 22 N -0.67 -4.92 7.30 -105.04 -0.77 -5.69 16 23 N -0.43 -6.99 11.57 -9.93 -0.11 -7.10 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.85 7.20 -51.93 -0.37 0.47 16 26 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 27 H 0.40 8.11 8.05 -40.82 -0.33 7.78 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.35 2.51 8.00 -39.30 -0.31 2.19 16 LS Contribution 298.09 15.07 4.49 4.49 Total: -1.00 -32.49 298.09 -6.44 -38.93 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -3.94 Total: 1.98 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -2.52 Total: 7.57 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.09 Total: -58.51 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.29 Total: -10.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.49 -6.44 -38.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226400736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.694 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds