Wall clock time and date at job start Mon Mar 30 2020 04:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00075 * 179.97438 * 10 9 7 12 12 O 1.21481 * 119.99668 * 0.02562 * 11 10 9 13 13 C 1.48444 * 120.00134 * 180.02562 * 11 10 9 14 14 N 1.30670 * 126.40594 * 359.69438 * 13 11 10 15 15 O 1.21295 * 110.11085 * 179.84128 * 14 13 11 16 16 C 1.33688 * 110.01227 * 0.42504 * 15 14 13 17 17 C 1.50702 * 126.44559 * 179.75725 * 16 15 14 18 18 H 1.09004 * 110.33136 * 165.77374 * 17 16 15 19 19 C 1.54908 * 110.37415 * 288.14362 * 17 16 15 20 20 C 1.55142 * 101.65146 * 155.89821 * 19 17 16 21 21 C 1.54314 * 103.02049 * 324.34843 * 20 19 17 22 22 N 1.47452 * 107.23503 * 22.28441 * 21 20 19 23 23 N 1.30946 * 107.11045 * 359.73274 * 16 15 14 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 26 26 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 27 27 H 0.97000 * 119.99760 * 0.02562 * 10 9 7 28 28 H 1.08991 * 110.99201 * 273.99381 * 19 17 16 29 29 H 1.09001 * 110.98397 * 37.81090 * 19 17 16 30 30 H 1.08997 * 110.70387 * 205.96885 * 20 19 17 31 31 H 1.08999 * 110.85533 * 82.80206 * 20 19 17 32 32 H 1.09000 * 109.89282 * 262.87568 * 21 20 19 33 33 H 1.09004 * 109.88986 * 141.68829 * 21 20 19 34 34 H 1.00893 * 110.99773 * 238.72237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 5.3251 -2.8215 -0.0001 12 8 6.1144 -1.8981 0.0004 13 6 5.8199 -4.2210 -0.0008 14 7 5.0869 -5.3028 0.0042 15 8 5.7959 -6.2869 -0.0013 16 6 7.0825 -5.9239 -0.0012 17 6 8.2733 -6.8476 -0.0018 18 1 9.1798 -6.2967 -0.2528 19 6 8.4224 -7.5362 1.3778 20 6 9.2107 -8.8191 1.0040 21 6 8.6405 -9.1861 -0.3822 22 7 8.0639 -7.9566 -0.9568 23 7 7.1135 -4.6149 -0.0010 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8746 -0.6807 0.8905 27 1 3.3696 -3.3125 -0.0009 28 1 8.9941 -6.9131 2.0654 29 1 7.4476 -7.7852 1.7972 30 1 9.0160 -9.6144 1.7235 31 1 10.2790 -8.6131 0.9390 32 1 7.8650 -9.9445 -0.2753 33 1 9.4387 -9.5569 -1.0252 34 1 7.0833 -8.0781 -1.1605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226400736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:21 Heat of formation + Delta-G solvation = 10.685699 kcal Electronic energy + Delta-G solvation = -19362.615688 eV Core-core repulsion = 16104.720599 eV Total energy + Delta-G solvation = -3257.895089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.08889 -40.86345 -39.71440 -37.11904 -36.44857 -34.72056 -34.02203 -31.16487 -30.53149 -29.89153 -27.01705 -25.03568 -24.30422 -22.99466 -21.93124 -21.63977 -19.91218 -19.57324 -18.91141 -18.02744 -17.91032 -17.06909 -16.56939 -16.51941 -16.26562 -15.13869 -15.07538 -14.89520 -14.52731 -14.39992 -14.06330 -13.90275 -13.31181 -13.17997 -12.86090 -12.73676 -12.63527 -12.53185 -12.17860 -11.96711 -11.77884 -11.71977 -11.65969 -11.41611 -10.97647 -10.29372 -9.64821 -8.44281 -6.53915 -0.47294 0.33251 1.31734 1.33214 1.36157 1.44095 1.47552 1.76457 2.25360 2.43180 2.72137 2.90580 3.16421 3.50643 3.64784 3.79332 3.92371 4.23715 4.35951 4.45897 4.51774 4.63237 4.77141 4.88281 4.91852 5.06105 5.08238 5.13813 5.15581 5.29323 5.63534 5.93164 6.16076 6.30934 6.48733 6.69766 6.80723 7.12610 8.70471 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.055920 B = 0.003410 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.599105 B = 8209.408227 C = 8495.327019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.029 3.971 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.231 3.769 10 N -0.679 5.679 11 C 0.595 3.405 12 O -0.547 6.547 13 C 0.123 3.877 14 N -0.343 5.343 15 O 0.117 5.883 16 C 0.191 3.809 17 C 0.177 3.823 18 H 0.140 0.860 19 C -0.147 4.147 20 C -0.130 4.130 21 C 0.042 3.958 22 N -0.683 5.683 23 N -0.456 5.456 24 H 0.275 0.725 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.412 0.588 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.616 -20.864 1.890 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.172 4.172 3 Si 0.762 3.238 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.592 4.592 8 H 0.075 0.925 9 C 0.109 3.891 10 N -0.329 5.329 11 C 0.377 3.623 12 O -0.423 6.423 13 C -0.150 4.150 14 N -0.045 5.045 15 O 0.045 5.955 16 C -0.030 4.030 17 C 0.066 3.934 18 H 0.158 0.842 19 C -0.187 4.187 20 C -0.168 4.168 21 C -0.086 4.086 22 N -0.314 5.314 23 N -0.188 5.188 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.248 0.752 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 18.819 -19.365 1.455 27.042 hybrid contribution -1.164 0.359 0.586 1.352 sum 17.654 -19.006 2.042 26.021 Atomic orbital electron populations 1.69975 1.07797 1.28895 1.49982 1.25604 0.95594 1.02776 0.93184 0.85828 0.79363 0.78857 0.79732 1.18651 1.19631 1.18003 1.21184 0.89479 0.94806 1.53764 0.92481 1.19377 0.93881 0.78775 0.97064 1.45895 1.04901 1.11381 1.70697 1.16643 0.83181 0.84290 0.78212 1.90764 1.56118 1.44178 1.51284 1.25393 0.86996 0.96099 1.06511 1.74960 1.18326 0.94402 1.16799 1.85225 1.16829 1.29547 1.63932 1.29750 0.87956 0.90757 0.94563 1.21578 0.88057 0.89122 0.94651 0.84215 1.23322 1.02682 0.97943 0.94708 1.22777 1.00789 0.96417 0.96801 1.22852 1.00302 0.90550 0.94905 1.62131 1.22953 1.04681 1.41663 1.71964 1.18556 1.09660 1.18665 0.91596 0.95444 0.95508 0.75226 0.88524 0.90283 0.88524 0.89369 0.90866 0.89131 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 2 C 0.03 1.66 5.47 84.65 0.46 2.13 16 3 Si 0.94 43.52 27.47 68.60 1.88 45.40 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 7 C -0.55 -31.04 9.83 25.60 0.25 -30.79 16 8 H 0.06 3.40 7.84 -2.92 -0.02 3.37 16 9 C 0.23 11.52 4.50 85.64 0.39 11.91 16 10 N -0.68 -29.77 5.55 -469.12 -2.60 -32.37 16 11 C 0.60 25.61 7.85 86.96 0.68 26.30 16 12 O -0.55 -26.71 17.10 -3.66 -0.06 -26.78 16 13 C 0.12 4.45 8.01 137.33 1.10 5.55 16 14 N -0.34 -10.70 11.89 -59.34 -0.71 -11.40 16 15 O 0.12 2.81 10.82 74.44 0.81 3.62 16 16 C 0.19 4.36 7.19 88.36 0.64 5.00 16 17 C 0.18 2.51 3.95 44.64 0.18 2.68 16 18 H 0.14 1.94 8.14 -2.38 -0.02 1.92 16 19 C -0.15 -1.37 6.48 31.98 0.21 -1.17 16 20 C -0.13 -0.68 6.94 31.77 0.22 -0.46 16 21 C 0.04 0.29 7.58 86.64 0.66 0.95 16 22 N -0.68 -8.35 7.30 -486.25 -3.55 -11.90 16 23 N -0.46 -14.62 11.57 -302.75 -3.50 -18.12 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 26 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 27 H 0.41 16.78 8.05 -92.71 -0.75 16.03 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.78 8.05 -2.39 -0.02 0.76 16 30 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.35 4.23 8.00 -89.70 -0.72 3.52 16 Total: -1.00 -69.90 298.09 -3.02 -72.92 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -0.36 Total: 11.78 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 4.78 Total: 22.10 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -10.06 Total: -129.04 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.74 Total: -23.16 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.40 kcal Total: -69.90 -3.02 -72.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226400736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.602 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds