Wall clock time and date at job start Mon Mar 30 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34953 * 126.03589 * 2 1 4 4 C 1.35316 * 107.74642 * 179.74952 * 3 2 1 5 5 C 1.39873 * 107.91741 * 0.39420 * 4 3 2 6 6 C 1.50703 * 125.89555 * 179.86538 * 5 4 3 7 7 C 1.53000 * 109.46912 * 124.71255 * 6 5 4 8 8 N 1.46499 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21437 * 119.99938 * 359.97438 * 9 8 7 11 11 C 1.48830 * 119.99980 * 180.02562 * 9 8 7 12 12 O 1.21504 * 119.99865 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99980 * 180.02562 * 11 9 8 14 14 C 1.36122 * 119.99673 * 180.02562 * 13 11 9 15 15 H 1.07995 * 120.00550 * 359.97438 * 14 13 11 16 16 C 1.39583 * 119.99641 * 180.02562 * 14 13 11 17 17 N 1.31021 * 120.00188 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47163 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47548 * 119.99903 * 18 16 14 21 21 H 1.48504 * 109.47233 * 240.00095 * 18 16 14 22 22 N 1.30837 * 108.20376 * 359.60065 * 5 4 3 23 23 H 1.08999 * 109.46912 * 269.97474 * 1 2 3 24 24 H 1.09001 * 109.47054 * 29.97920 * 1 2 3 25 25 H 1.09007 * 109.46958 * 149.97583 * 1 2 3 26 26 H 1.08001 * 126.12324 * 359.97438 * 3 2 1 27 27 H 1.08002 * 126.03735 * 180.27362 * 4 3 2 28 28 H 1.09001 * 109.46980 * 4.71382 * 6 5 4 29 29 H 1.08992 * 109.47158 * 244.71488 * 6 5 4 30 30 H 1.09002 * 109.47398 * 300.00078 * 7 6 5 31 31 H 1.09001 * 109.47194 * 60.00258 * 7 6 5 32 32 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 33 33 H 0.96991 * 119.99747 * 0.02562 * 13 11 9 34 34 H 0.96996 * 119.99898 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0056 5 6 3.5347 -0.7320 0.0000 6 6 4.7497 -1.6235 0.0006 7 6 4.6710 -2.5922 1.1822 8 7 5.8519 -3.4592 1.1824 9 6 5.9985 -4.3980 2.1383 10 8 5.1520 -4.5248 2.9997 11 6 7.1985 -5.2784 2.1388 12 8 8.0461 -5.1505 1.2777 13 7 7.3449 -6.2175 3.0944 14 6 8.4426 -7.0224 3.0951 15 1 9.1961 -6.9088 2.3297 16 6 8.5940 -7.9953 4.0844 17 7 7.6792 -8.1342 5.0121 18 14 10.1000 -9.1004 4.0850 19 1 10.9759 -8.7441 2.9400 20 1 10.8477 -8.9176 5.3550 21 1 9.6742 -10.5176 3.9610 22 7 2.2892 -1.1327 0.0000 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.9280 2.1194 -0.0004 27 1 4.4211 1.2965 0.0113 28 1 5.6482 -1.0130 0.0904 29 1 4.7862 -2.1886 -0.9307 30 1 4.6346 -2.0270 2.1136 31 1 3.7725 -3.2027 1.0924 32 1 6.5283 -3.3577 0.4946 33 1 6.6680 -6.3198 3.7815 34 1 7.7842 -8.8106 5.6993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227237113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:09 Heat of formation + Delta-G solvation = 2.338855 kcal Electronic energy + Delta-G solvation = -18814.844240 eV Core-core repulsion = 15556.587205 eV Total energy + Delta-G solvation = -3258.257035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35159 -39.39694 -37.22746 -35.49245 -34.26174 -33.43692 -31.39364 -30.75169 -29.90656 -26.76025 -25.69699 -23.82140 -21.96614 -21.27433 -20.03787 -19.16383 -18.27265 -17.16475 -16.88241 -15.86128 -15.67527 -15.30809 -14.94467 -14.37477 -14.27601 -14.13526 -13.87360 -13.63342 -13.06576 -12.93992 -12.69074 -12.48574 -12.36144 -11.84403 -11.73798 -11.43945 -11.18177 -10.67153 -10.47554 -10.38012 -10.30025 -9.69676 -9.42363 -8.75743 -8.67235 -8.22698 -8.18636 -6.63366 -3.95682 1.68968 2.30234 2.50796 2.59273 3.16847 3.18877 3.25733 3.49347 4.09294 4.25516 4.33527 4.54703 4.75504 4.84714 4.95774 5.06206 5.10128 5.19522 5.23379 5.38788 5.57213 5.60600 5.78759 6.02413 6.07267 6.17017 6.46531 6.79235 6.83886 7.34809 7.54695 7.74041 7.93338 8.37537 8.68385 9.00372 9.36258 9.89243 10.51727 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.056124 B = 0.002927 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.778803 B = 9564.042933 C = 9902.932773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.050 3.950 4 C -0.266 4.266 5 C 0.081 3.919 6 C -0.050 4.050 7 C 0.128 3.872 8 N -0.716 5.716 9 C 0.513 3.487 10 O -0.546 6.546 11 C 0.396 3.604 12 O -0.598 6.598 13 N -0.501 5.501 14 C -0.305 4.305 15 H 0.113 0.887 16 C 0.030 3.970 17 N -0.870 5.870 18 Si 0.938 3.062 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.278 1.278 22 N -0.288 5.288 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.173 0.827 27 H 0.149 0.851 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.410 0.590 33 H 0.405 0.595 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 16.929 -8.826 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.161 5.161 3 C -0.095 4.095 4 C -0.296 4.296 5 C -0.086 4.086 6 C -0.089 4.089 7 C 0.003 3.997 8 N -0.370 5.370 9 C 0.297 3.703 10 O -0.423 6.423 11 C 0.180 3.820 12 O -0.486 6.486 13 N -0.135 5.135 14 C -0.436 4.436 15 H 0.131 0.869 16 C -0.177 4.177 17 N -0.508 5.508 18 Si 0.764 3.236 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.203 1.203 22 N -0.110 5.110 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.190 0.810 27 H 0.167 0.833 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.246 0.754 33 H 0.240 0.760 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.389 15.808 -8.586 21.842 hybrid contribution 0.885 0.340 0.199 0.969 sum -11.504 16.148 -8.387 21.527 Atomic orbital electron populations 1.21850 0.74281 1.04389 1.03448 1.48536 1.06644 1.03847 1.57078 1.22526 0.91221 0.93434 1.02364 1.21437 0.97122 0.94310 1.16693 1.22081 0.93041 0.93878 0.99634 1.20207 0.93080 0.95963 0.99689 1.21208 0.88907 0.91809 0.97754 1.45637 1.24421 1.35651 1.31297 1.20667 0.87499 0.81027 0.81071 1.90692 1.44119 1.70168 1.37287 1.18966 0.88684 0.86970 0.87343 1.90575 1.44725 1.73460 1.39854 1.41572 1.20977 1.27092 1.23841 1.19928 0.99798 1.11447 1.12380 0.86919 1.25591 0.99146 0.98020 0.94934 1.69498 1.33937 1.33507 1.13835 0.85668 0.80211 0.79014 0.78714 1.18713 1.20323 1.20318 1.77391 1.01336 1.07645 1.24667 0.90704 0.89579 0.89255 0.80980 0.83350 0.88977 0.89261 0.91526 0.90961 0.75439 0.75991 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.47 59.85 0.69 1.28 16 2 N -0.38 -3.87 4.01 -68.16 -0.27 -4.14 16 3 C 0.05 0.43 11.49 -17.22 -0.20 0.24 16 4 C -0.27 -2.68 10.72 -40.01 -0.43 -3.11 16 5 C 0.08 0.99 6.49 -82.40 -0.53 0.46 16 6 C -0.05 -0.57 5.91 -27.88 -0.16 -0.74 16 7 C 0.13 1.93 5.63 -4.04 -0.02 1.90 16 8 N -0.72 -12.64 5.55 -60.93 -0.34 -12.97 16 9 C 0.51 11.57 7.87 -11.87 -0.09 11.47 16 10 O -0.55 -13.41 16.47 5.42 0.09 -13.32 16 11 C 0.40 10.19 7.82 -11.87 -0.09 10.10 16 12 O -0.60 -16.18 16.03 5.36 0.09 -16.10 16 13 N -0.50 -13.67 5.25 -11.59 -0.06 -13.73 16 14 C -0.30 -8.52 9.67 -15.15 -0.15 -8.67 16 15 H 0.11 3.21 7.15 -52.49 -0.38 2.84 16 16 C 0.03 0.78 5.51 -17.40 -0.10 0.69 16 17 N -0.87 -23.68 13.03 55.53 0.72 -22.95 16 18 Si 0.94 20.32 29.56 -169.99 -5.02 15.29 16 19 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 N -0.29 -3.89 12.54 33.67 0.42 -3.47 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 27 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.41 6.59 7.93 -40.82 -0.32 6.26 16 33 H 0.40 11.16 7.35 -40.82 -0.30 10.86 16 34 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 LS Contribution 310.16 15.07 4.67 4.67 Total: -1.00 -34.58 310.16 -4.73 -39.31 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -3.94 Total: 13.80 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -1.09 Total: 13.61 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.47 Total: -57.28 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: 0.18 Total: -29.42 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.58 -4.73 -39.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227237113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.649 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds