Wall clock time and date at job start Mon Mar 30 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34953 * 126.03589 * 2 1 4 4 C 1.35316 * 107.74642 * 179.74952 * 3 2 1 5 5 C 1.39873 * 107.91741 * 0.39420 * 4 3 2 6 6 C 1.50703 * 125.89555 * 179.86538 * 5 4 3 7 7 C 1.53000 * 109.46912 * 124.71255 * 6 5 4 8 8 N 1.46499 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21437 * 119.99938 * 359.97438 * 9 8 7 11 11 C 1.48830 * 119.99980 * 180.02562 * 9 8 7 12 12 O 1.21504 * 119.99865 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99980 * 180.02562 * 11 9 8 14 14 C 1.36122 * 119.99673 * 180.02562 * 13 11 9 15 15 H 1.07995 * 120.00550 * 359.97438 * 14 13 11 16 16 C 1.39583 * 119.99641 * 180.02562 * 14 13 11 17 17 N 1.31021 * 120.00188 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47163 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47548 * 119.99903 * 18 16 14 21 21 H 1.48504 * 109.47233 * 240.00095 * 18 16 14 22 22 N 1.30837 * 108.20376 * 359.60065 * 5 4 3 23 23 H 1.08999 * 109.46912 * 269.97474 * 1 2 3 24 24 H 1.09001 * 109.47054 * 29.97920 * 1 2 3 25 25 H 1.09007 * 109.46958 * 149.97583 * 1 2 3 26 26 H 1.08001 * 126.12324 * 359.97438 * 3 2 1 27 27 H 1.08002 * 126.03735 * 180.27362 * 4 3 2 28 28 H 1.09001 * 109.46980 * 4.71382 * 6 5 4 29 29 H 1.08992 * 109.47158 * 244.71488 * 6 5 4 30 30 H 1.09002 * 109.47398 * 300.00078 * 7 6 5 31 31 H 1.09001 * 109.47194 * 60.00258 * 7 6 5 32 32 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 33 33 H 0.96991 * 119.99747 * 0.02562 * 13 11 9 34 34 H 0.96996 * 119.99898 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0056 5 6 3.5347 -0.7320 0.0000 6 6 4.7497 -1.6235 0.0006 7 6 4.6710 -2.5922 1.1822 8 7 5.8519 -3.4592 1.1824 9 6 5.9985 -4.3980 2.1383 10 8 5.1520 -4.5248 2.9997 11 6 7.1985 -5.2784 2.1388 12 8 8.0461 -5.1505 1.2777 13 7 7.3449 -6.2175 3.0944 14 6 8.4426 -7.0224 3.0951 15 1 9.1961 -6.9088 2.3297 16 6 8.5940 -7.9953 4.0844 17 7 7.6792 -8.1342 5.0121 18 14 10.1000 -9.1004 4.0850 19 1 10.9759 -8.7441 2.9400 20 1 10.8477 -8.9176 5.3550 21 1 9.6742 -10.5176 3.9610 22 7 2.2892 -1.1327 0.0000 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.9280 2.1194 -0.0004 27 1 4.4211 1.2965 0.0113 28 1 5.6482 -1.0130 0.0904 29 1 4.7862 -2.1886 -0.9307 30 1 4.6346 -2.0270 2.1136 31 1 3.7725 -3.2027 1.0924 32 1 6.5283 -3.3577 0.4946 33 1 6.6680 -6.3198 3.7815 34 1 7.7842 -8.8106 5.6993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227237113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:07 Heat of formation + Delta-G solvation = -24.880648 kcal Electronic energy + Delta-G solvation = -18816.024566 eV Core-core repulsion = 15556.587205 eV Total energy + Delta-G solvation = -3259.437361 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -42.09996 -41.26426 -39.17747 -36.93765 -36.16537 -34.51586 -33.44429 -31.72090 -30.78732 -28.13428 -27.16697 -25.22254 -23.48931 -22.00660 -21.41999 -20.58141 -20.22385 -18.75162 -17.91739 -17.52900 -16.92126 -16.78575 -16.40025 -15.94331 -15.71838 -15.66378 -14.93379 -14.68856 -14.56103 -14.29166 -13.69562 -13.66536 -13.55205 -13.10424 -12.97001 -12.85310 -12.56190 -12.49837 -12.30277 -12.07022 -11.67027 -11.49683 -10.30859 -10.27812 -10.23547 -10.17082 -9.46994 -8.65478 -6.10423 0.59735 0.96265 1.41859 1.46877 1.57291 1.65916 1.75849 1.94709 2.30831 2.37486 3.15893 3.27293 3.61381 3.84599 4.00483 4.08505 4.12954 4.20196 4.44288 4.50299 4.67858 4.70482 4.84253 4.95098 4.99926 5.17855 5.26096 5.28159 5.68440 5.69797 6.16116 6.20688 6.39809 6.77343 6.82125 7.02409 7.28113 7.79863 8.50795 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.056124 B = 0.002927 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.778803 B = 9564.042933 C = 9902.932773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.061 3.939 4 C -0.284 4.284 5 C 0.062 3.938 6 C -0.039 4.039 7 C 0.133 3.867 8 N -0.691 5.691 9 C 0.517 3.483 10 O -0.570 6.570 11 C 0.392 3.608 12 O -0.614 6.614 13 N -0.512 5.512 14 C -0.344 4.344 15 H 0.101 0.899 16 C -0.007 4.007 17 N -0.897 5.897 18 Si 1.012 2.988 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.266 1.266 22 N -0.339 5.339 23 H 0.081 0.919 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.216 0.784 27 H 0.168 0.832 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.420 0.580 33 H 0.400 0.600 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.310 18.339 -9.419 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.167 5.167 3 C -0.085 4.085 4 C -0.313 4.313 5 C -0.104 4.104 6 C -0.078 4.078 7 C 0.009 3.991 8 N -0.344 5.344 9 C 0.300 3.700 10 O -0.449 6.449 11 C 0.177 3.823 12 O -0.503 6.503 13 N -0.146 5.146 14 C -0.473 4.473 15 H 0.118 0.882 16 C -0.211 4.211 17 N -0.535 5.535 18 Si 0.833 3.167 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.191 1.191 22 N -0.164 5.164 23 H 0.100 0.900 24 H 0.140 0.860 25 H 0.102 0.898 26 H 0.233 0.767 27 H 0.185 0.815 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.258 0.742 33 H 0.235 0.765 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.403 17.245 -9.207 23.152 hybrid contribution 0.753 0.019 0.345 0.828 sum -11.650 17.264 -8.862 22.634 Atomic orbital electron populations 1.22177 0.72258 1.05916 1.04382 1.48896 1.07942 1.03515 1.56325 1.23234 0.90603 0.94774 0.99930 1.21775 0.98711 0.93500 1.17347 1.22238 0.92778 0.95099 1.00307 1.20147 0.94269 0.95437 0.97983 1.21299 0.86777 0.91578 0.99455 1.45557 1.25157 1.34037 1.29663 1.20137 0.86263 0.81622 0.81969 1.90683 1.44531 1.71119 1.38587 1.19534 0.89399 0.86796 0.86554 1.90543 1.45642 1.73920 1.40235 1.41675 1.20960 1.27759 1.24197 1.20039 1.00408 1.13347 1.13555 0.88155 1.26584 1.02149 0.98614 0.93743 1.69566 1.35552 1.34151 1.14259 0.84616 0.76119 0.77000 0.79015 1.18617 1.19054 1.19122 1.77294 1.02384 1.10091 1.26591 0.90037 0.86003 0.89843 0.76713 0.81488 0.86612 0.88571 0.92048 0.92588 0.74232 0.76537 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.47 127.77 1.47 2.38 16 2 N -0.38 -7.23 4.01 -369.55 -1.48 -8.71 16 3 C 0.06 0.88 11.49 83.54 0.96 1.84 16 4 C -0.28 -5.13 10.72 21.99 0.24 -4.90 16 5 C 0.06 1.45 6.49 43.10 0.28 1.73 16 6 C -0.04 -0.85 5.91 29.85 0.18 -0.68 16 7 C 0.13 3.97 5.63 86.38 0.49 4.45 16 8 N -0.69 -24.18 5.55 -465.01 -2.58 -26.75 16 9 C 0.52 23.61 7.87 87.08 0.69 24.29 16 10 O -0.57 -28.55 16.47 -3.52 -0.06 -28.60 16 11 C 0.39 20.60 7.82 87.08 0.68 21.28 16 12 O -0.61 -33.66 16.03 -3.73 -0.06 -33.71 16 13 N -0.51 -28.78 5.25 -308.87 -1.62 -30.40 16 14 C -0.34 -19.62 9.67 84.35 0.82 -18.81 16 15 H 0.10 5.86 7.15 -2.91 -0.02 5.84 16 16 C -0.01 -0.37 5.51 85.14 0.47 0.10 16 17 N -0.90 -49.09 13.03 21.76 0.28 -48.81 16 18 Si 1.01 41.23 29.56 68.60 2.03 43.26 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 22 N -0.34 -9.07 12.54 -47.38 -0.59 -9.66 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.22 0.99 8.06 -2.91 -0.02 0.97 16 27 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.12 1.95 8.12 -2.39 -0.02 1.93 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.42 13.12 7.93 -92.71 -0.74 12.38 16 33 H 0.40 22.83 7.35 -92.71 -0.68 22.15 16 34 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 Total: -1.00 -76.04 310.16 1.90 -74.14 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.27 Total: 37.56 kcal Atomic # 6 Polarization: 25.44 SS G_CDS: 6.25 Total: 31.70 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -5.99 Total: -124.33 kcal Atomic # 8 Polarization: -62.20 SS G_CDS: -0.12 Total: -62.32 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -76.04 1.90 -74.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227237113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.258 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds