Wall clock time and date at job start Mon Mar 30 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50690 * 109.47043 * 2 1 4 4 N 1.30835 * 125.89567 * 270.37138 * 3 2 1 5 5 N 1.40051 * 108.36390 * 180.12815 * 4 3 2 6 6 C 1.46506 * 125.99611 * 179.81887 * 5 4 3 7 7 C 1.35235 * 108.00934 * 359.55186 * 5 4 3 8 8 C 1.35843 * 107.64244 * 0.26496 * 7 5 4 9 9 N 1.40499 * 126.11354 * 179.97438 * 8 7 5 10 10 C 1.34784 * 120.00210 * 0.02562 * 9 8 7 11 11 O 1.21491 * 119.99644 * 0.02562 * 10 9 8 12 12 C 1.48723 * 120.00075 * 179.97438 * 10 9 8 13 13 O 1.21513 * 120.00248 * 0.02562 * 12 10 9 14 14 N 1.34774 * 120.00036 * 179.97438 * 12 10 9 15 15 C 1.36142 * 120.00286 * 180.02562 * 14 12 10 16 16 H 1.08000 * 119.99778 * 359.97438 * 15 14 12 17 17 C 1.39565 * 120.00126 * 180.02562 * 15 14 12 18 18 N 1.31021 * 120.00112 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47100 * 90.00230 * 19 17 15 21 21 H 1.48503 * 109.47301 * 209.99989 * 19 17 15 22 22 H 1.48501 * 109.47231 * 330.00301 * 19 17 15 23 23 H 1.08996 * 109.47437 * 59.99646 * 1 2 3 24 24 H 1.08995 * 109.47611 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46834 * 299.99759 * 1 2 3 26 26 H 1.09003 * 109.46721 * 239.99712 * 2 1 3 27 27 H 1.08998 * 109.46708 * 120.00391 * 2 1 3 28 28 H 1.09001 * 109.47060 * 269.69244 * 6 5 4 29 29 H 1.09004 * 109.47073 * 29.68732 * 6 5 4 30 30 H 1.09000 * 109.47212 * 149.68815 * 6 5 4 31 31 H 1.08007 * 126.18316 * 180.24645 * 7 5 4 32 32 H 0.97002 * 120.00552 * 180.02562 * 9 8 7 33 33 H 0.96997 * 120.00069 * 359.97438 * 14 12 10 34 34 H 0.97007 * 120.00452 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2815 2.1462 -1.0599 5 7 2.7320 3.4034 -0.6380 6 6 3.1239 4.5145 -1.5089 7 6 2.7363 3.4139 0.7143 8 6 2.3066 2.1964 1.1368 9 7 2.1631 1.7869 2.4731 10 6 2.4638 2.6373 3.4747 11 8 2.8584 3.7581 3.2219 12 6 2.3113 2.2039 4.8891 13 8 1.9161 1.0830 5.1420 14 7 2.6124 3.0541 5.8906 15 6 2.4733 2.6572 7.1855 16 1 2.1213 1.6612 7.4101 17 6 2.7846 3.5378 8.2225 18 7 3.2112 4.7463 7.9500 19 14 2.5931 2.9935 9.9992 20 1 3.8626 2.3832 10.4695 21 1 2.2664 4.1697 10.8448 22 1 1.4983 1.9949 10.0957 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.1901 4.4479 -1.7253 29 1 2.5601 4.4623 -2.4404 30 1 2.9129 5.4598 -1.0090 31 1 3.0287 4.2408 1.3446 32 1 1.8477 0.8921 2.6750 33 1 2.9289 3.9485 5.6889 34 1 3.4273 5.3585 8.6707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231085862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:48 Heat of formation + Delta-G solvation = 2.591945 kcal Electronic energy + Delta-G solvation = -19663.573810 eV Core-core repulsion = 16405.327750 eV Total energy + Delta-G solvation = -3258.246060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32236 -39.38326 -37.27061 -35.19314 -34.39693 -33.58239 -31.58335 -31.43565 -29.18902 -26.70283 -25.74104 -23.68042 -23.00967 -21.22873 -19.79824 -19.05387 -18.29947 -17.56634 -16.23543 -15.93761 -15.59558 -15.06752 -14.72073 -14.63937 -14.21315 -14.17543 -13.89551 -13.31607 -12.95987 -12.84887 -12.74787 -12.58616 -12.01853 -11.81908 -11.47326 -11.23796 -11.19835 -10.59479 -10.57273 -10.44666 -10.44574 -10.35393 -9.76943 -9.12901 -8.35436 -8.28470 -7.46637 -6.72970 -4.04531 1.93267 2.18516 2.49285 2.98860 3.13730 3.17402 3.20286 3.43320 4.02487 4.25184 4.46664 4.80926 4.95130 5.00834 5.10047 5.13525 5.26012 5.32461 5.34283 5.52165 5.69443 5.80000 5.90151 5.98149 6.12351 6.17217 6.37969 6.89407 7.21273 7.25765 7.59411 7.72847 7.88214 8.25818 8.53521 8.89584 9.24633 9.78041 10.41630 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.004300 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.484664 B = 6509.844831 C = 7330.770326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.064 3.936 4 N -0.289 5.289 5 N -0.379 5.379 6 C 0.110 3.890 7 C 0.038 3.962 8 C 0.002 3.998 9 N -0.621 5.621 10 C 0.511 3.489 11 O -0.541 6.541 12 C 0.396 3.604 13 O -0.596 6.596 14 N -0.495 5.495 15 C -0.304 4.304 16 H 0.114 0.886 17 C 0.032 3.968 18 N -0.867 5.867 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.264 1.264 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.201 0.799 32 H 0.420 0.580 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -2.058 -14.080 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.104 4.104 4 N -0.112 5.112 5 N -0.164 5.164 6 C -0.031 4.031 7 C -0.108 4.108 8 C -0.103 4.103 9 N -0.267 5.267 10 C 0.297 3.703 11 O -0.418 6.418 12 C 0.180 3.820 13 O -0.485 6.485 14 N -0.129 5.129 15 C -0.435 4.435 16 H 0.132 0.868 17 C -0.175 4.175 18 N -0.504 5.504 19 Si 0.765 3.235 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.188 1.188 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.218 0.782 32 H 0.257 0.743 33 H 0.240 0.760 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.188 -1.629 -15.267 15.400 hybrid contribution 0.080 0.101 1.657 1.662 sum -1.108 -1.528 -13.610 13.741 Atomic orbital electron populations 1.21727 0.94151 1.02015 1.02520 1.19944 0.96261 0.88569 1.03501 1.22108 1.01907 0.97350 0.89057 1.77127 1.20737 0.91161 1.22220 1.48104 1.52367 1.11105 1.04838 1.21779 1.01047 0.85888 0.94434 1.23025 1.03545 1.00173 0.84072 1.17676 1.12992 0.94841 0.84762 1.42575 1.64713 1.17828 1.01592 1.20784 0.77427 0.84446 0.87630 1.90530 1.46072 1.20471 1.84720 1.18662 0.91220 0.87582 0.84501 1.90598 1.54002 1.20383 1.83496 1.41551 1.51417 1.14728 1.05200 1.19915 1.41951 1.01231 0.80401 0.86826 1.25600 0.95642 0.94775 1.01520 1.69484 1.40048 1.05798 1.35118 0.85705 0.79302 0.78454 0.80029 1.19835 1.20483 1.18816 0.92515 0.91847 0.92205 0.90137 0.89965 0.90963 0.89582 0.89413 0.78233 0.74291 0.75955 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.04 -0.50 6.35 -27.89 -0.18 -0.68 16 3 C 0.06 0.96 6.49 -82.23 -0.53 0.43 16 4 N -0.29 -4.44 12.56 33.76 0.42 -4.02 16 5 N -0.38 -5.40 4.02 -67.94 -0.27 -5.68 16 6 C 0.11 1.00 11.47 59.85 0.69 1.69 16 7 C 0.04 0.63 10.35 -16.91 -0.18 0.45 16 8 C 0.00 0.03 6.90 -83.95 -0.58 -0.55 16 9 N -0.62 -11.28 5.46 -10.65 -0.06 -11.34 16 10 C 0.51 10.97 7.83 -11.92 -0.09 10.87 16 11 O -0.54 -11.94 13.62 5.37 0.07 -11.87 16 12 C 0.40 9.76 7.81 -11.93 -0.09 9.66 16 13 O -0.60 -15.63 16.03 5.35 0.09 -15.54 16 14 N -0.49 -12.89 5.25 -11.62 -0.06 -12.96 16 15 C -0.30 -8.19 9.67 -15.14 -0.15 -8.34 16 16 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 17 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 18 N -0.87 -22.65 13.03 55.53 0.72 -21.93 16 19 Si 0.94 19.63 29.56 -169.99 -5.02 14.60 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.89 7.69 -51.93 -0.40 0.49 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.20 3.38 5.84 -52.48 -0.31 3.08 16 32 H 0.42 7.04 7.68 -40.82 -0.31 6.73 16 33 H 0.41 10.55 7.35 -40.82 -0.30 10.25 16 34 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -31.13 304.11 -4.15 -35.29 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -3.79 Total: 15.76 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -0.84 Total: 13.08 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.76 Total: -55.91 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: 0.16 Total: -27.41 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.13 -4.15 -35.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231085862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.880 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds