Wall clock time and date at job start Mon Mar 30 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50690 * 109.47043 * 2 1 4 4 N 1.30835 * 125.89567 * 270.37138 * 3 2 1 5 5 N 1.40051 * 108.36390 * 180.12815 * 4 3 2 6 6 C 1.46506 * 125.99611 * 179.81887 * 5 4 3 7 7 C 1.35235 * 108.00934 * 359.55186 * 5 4 3 8 8 C 1.35843 * 107.64244 * 0.26496 * 7 5 4 9 9 N 1.40499 * 126.11354 * 179.97438 * 8 7 5 10 10 C 1.34784 * 120.00210 * 0.02562 * 9 8 7 11 11 O 1.21491 * 119.99644 * 0.02562 * 10 9 8 12 12 C 1.48723 * 120.00075 * 179.97438 * 10 9 8 13 13 O 1.21513 * 120.00248 * 0.02562 * 12 10 9 14 14 N 1.34774 * 120.00036 * 179.97438 * 12 10 9 15 15 C 1.36142 * 120.00286 * 180.02562 * 14 12 10 16 16 H 1.08000 * 119.99778 * 359.97438 * 15 14 12 17 17 C 1.39565 * 120.00126 * 180.02562 * 15 14 12 18 18 N 1.31021 * 120.00112 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47100 * 90.00230 * 19 17 15 21 21 H 1.48503 * 109.47301 * 209.99989 * 19 17 15 22 22 H 1.48501 * 109.47231 * 330.00301 * 19 17 15 23 23 H 1.08996 * 109.47437 * 59.99646 * 1 2 3 24 24 H 1.08995 * 109.47611 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46834 * 299.99759 * 1 2 3 26 26 H 1.09003 * 109.46721 * 239.99712 * 2 1 3 27 27 H 1.08998 * 109.46708 * 120.00391 * 2 1 3 28 28 H 1.09001 * 109.47060 * 269.69244 * 6 5 4 29 29 H 1.09004 * 109.47073 * 29.68732 * 6 5 4 30 30 H 1.09000 * 109.47212 * 149.68815 * 6 5 4 31 31 H 1.08007 * 126.18316 * 180.24645 * 7 5 4 32 32 H 0.97002 * 120.00552 * 180.02562 * 9 8 7 33 33 H 0.96997 * 120.00069 * 359.97438 * 14 12 10 34 34 H 0.97007 * 120.00452 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2815 2.1462 -1.0599 5 7 2.7320 3.4034 -0.6380 6 6 3.1239 4.5145 -1.5089 7 6 2.7363 3.4139 0.7143 8 6 2.3066 2.1964 1.1368 9 7 2.1631 1.7869 2.4731 10 6 2.4638 2.6373 3.4747 11 8 2.8584 3.7581 3.2219 12 6 2.3113 2.2039 4.8891 13 8 1.9161 1.0830 5.1420 14 7 2.6124 3.0541 5.8906 15 6 2.4733 2.6572 7.1855 16 1 2.1213 1.6612 7.4101 17 6 2.7846 3.5378 8.2225 18 7 3.2112 4.7463 7.9500 19 14 2.5931 2.9935 9.9992 20 1 3.8626 2.3832 10.4695 21 1 2.2664 4.1697 10.8448 22 1 1.4983 1.9949 10.0957 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.1901 4.4479 -1.7253 29 1 2.5601 4.4623 -2.4404 30 1 2.9129 5.4598 -1.0090 31 1 3.0287 4.2408 1.3446 32 1 1.8477 0.8921 2.6750 33 1 2.9289 3.9485 5.6889 34 1 3.4273 5.3585 8.6707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231085862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:48 Heat of formation + Delta-G solvation = -20.335919 kcal Electronic energy + Delta-G solvation = -19664.568037 eV Core-core repulsion = 16405.327750 eV Total energy + Delta-G solvation = -3259.240287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.58764 -41.09987 -39.13201 -36.67888 -36.03839 -34.98083 -33.44458 -32.50157 -30.48746 -28.09365 -27.29915 -25.12940 -24.19455 -22.66971 -21.07237 -20.79884 -20.16873 -18.98983 -17.80528 -17.57530 -16.89395 -16.75250 -16.27244 -16.09707 -15.71571 -15.38761 -15.07164 -14.73183 -14.70206 -14.17179 -13.85648 -13.67085 -13.48713 -12.99669 -12.94334 -12.57197 -12.43372 -12.20745 -12.12353 -12.06368 -11.86600 -11.66390 -11.66010 -10.27643 -10.26934 -10.26081 -8.79681 -8.66324 -6.10272 0.39425 0.80940 1.33371 1.44275 1.45402 1.58665 1.71754 1.90973 2.30519 2.42584 3.15668 3.16021 3.53694 3.71900 3.96437 4.19471 4.25667 4.42752 4.45129 4.55047 4.58568 4.67375 4.70393 5.05800 5.06418 5.18343 5.26009 5.36496 5.61463 5.68992 6.00770 6.13813 6.34360 6.61423 6.79411 6.97333 7.26286 7.78469 8.49253 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.004300 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.484664 B = 6509.844831 C = 7330.770326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C 0.068 3.932 4 N -0.299 5.299 5 N -0.374 5.374 6 C 0.097 3.903 7 C 0.035 3.965 8 C -0.030 4.030 9 N -0.602 5.602 10 C 0.515 3.485 11 O -0.551 6.551 12 C 0.395 3.605 13 O -0.615 6.615 14 N -0.506 5.506 15 C -0.343 4.343 16 H 0.101 0.899 17 C -0.002 4.002 18 N -0.893 5.893 19 Si 1.009 2.991 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.263 1.263 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.194 0.806 32 H 0.426 0.574 33 H 0.402 0.598 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 -2.387 -14.811 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.100 4.100 4 N -0.122 5.122 5 N -0.158 5.158 6 C -0.042 4.042 7 C -0.113 4.113 8 C -0.134 4.134 9 N -0.248 5.248 10 C 0.300 3.700 11 O -0.429 6.429 12 C 0.179 3.821 13 O -0.504 6.504 14 N -0.139 5.139 15 C -0.473 4.473 16 H 0.118 0.882 17 C -0.207 4.207 18 N -0.531 5.531 19 Si 0.830 3.170 20 H -0.190 1.190 21 H -0.192 1.192 22 H -0.187 1.187 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.211 0.789 32 H 0.264 0.736 33 H 0.237 0.763 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.263 -1.952 -16.060 16.228 hybrid contribution 0.118 0.233 1.691 1.711 sum -1.145 -1.719 -14.370 14.517 Atomic orbital electron populations 1.21697 0.93324 1.03298 1.01618 1.20121 0.96881 0.86771 1.04686 1.22547 1.00997 0.98515 0.87946 1.77119 1.21082 0.91670 1.22361 1.48531 1.51078 1.11693 1.04508 1.22221 1.02371 0.85067 0.94555 1.22995 1.03145 0.99842 0.85275 1.17930 1.15202 0.95968 0.84288 1.42333 1.63239 1.17426 1.01753 1.20126 0.78276 0.84774 0.86872 1.90531 1.46926 1.20809 1.84653 1.19215 0.89971 0.87110 0.85762 1.90565 1.54452 1.21098 1.84332 1.41616 1.52066 1.14755 1.05508 1.20007 1.44454 1.01447 0.81397 0.88154 1.26516 0.94325 0.94489 1.05365 1.69545 1.40095 1.06644 1.36788 0.84703 0.79398 0.78341 0.74561 1.18986 1.19185 1.18735 0.92782 0.89509 0.93683 0.88469 0.89249 0.89282 0.87943 0.87633 0.78920 0.73564 0.76311 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.89 71.98 0.71 -2.01 16 2 C -0.05 -0.97 6.35 29.85 0.19 -0.78 16 3 C 0.07 1.95 6.49 43.21 0.28 2.23 16 4 N -0.30 -8.66 12.56 -47.10 -0.59 -9.25 16 5 N -0.37 -10.05 4.02 -368.86 -1.48 -11.53 16 6 C 0.10 1.55 11.47 127.77 1.47 3.01 16 7 C 0.04 1.13 10.35 83.61 0.87 2.00 16 8 C -0.03 -0.99 6.90 37.70 0.26 -0.73 16 9 N -0.60 -21.76 5.46 -305.91 -1.67 -23.43 16 10 C 0.52 22.34 7.83 87.05 0.68 23.02 16 11 O -0.55 -24.59 13.62 -3.69 -0.05 -24.64 16 12 C 0.39 19.86 7.81 87.05 0.68 20.54 16 13 O -0.61 -32.78 16.03 -3.76 -0.06 -32.84 16 14 N -0.51 -27.08 5.25 -308.97 -1.62 -28.70 16 15 C -0.34 -18.89 9.67 84.34 0.82 -18.07 16 16 H 0.10 5.67 7.15 -2.91 -0.02 5.65 16 17 C 0.00 -0.11 5.51 85.13 0.47 0.35 16 18 N -0.89 -46.86 13.03 21.76 0.28 -46.57 16 19 Si 1.01 39.85 29.56 68.60 2.03 41.88 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 1.77 7.69 -2.39 -0.02 1.75 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.19 6.49 5.84 -2.91 -0.02 6.48 16 32 H 0.43 14.16 7.68 -92.71 -0.71 13.45 16 33 H 0.40 21.60 7.35 -92.71 -0.68 20.92 16 34 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 Total: -1.00 -66.67 304.11 3.02 -63.64 By element: Atomic # 1 Polarization: 42.12 SS G_CDS: -0.23 Total: 41.89 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 6.42 Total: 29.56 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -5.08 Total: -119.49 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -0.11 Total: -57.49 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -66.67 3.02 -63.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231085862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.308 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds