Wall clock time and date at job start Mon Mar 30 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34960 * 125.97037 * 2 1 4 4 C 1.35249 * 107.86710 * 179.97438 * 3 2 1 5 5 N 1.48016 * 126.07318 * 180.02562 * 4 3 2 6 6 O 1.21803 * 119.99888 * 5.13719 * 5 4 3 7 7 O 1.21802 * 120.00412 * 185.14237 * 5 4 3 8 8 C 1.40427 * 107.85933 * 0.02562 * 4 3 2 9 9 N 1.39994 * 125.97930 * 179.97438 * 8 4 3 10 10 C 1.46899 * 111.00038 * 114.15032 * 9 8 4 11 11 C 1.50702 * 109.47044 * 199.46770 * 10 9 8 12 12 H 1.07999 * 119.99540 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99770 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00256 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99850 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46942 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47010 * 119.99971 * 15 13 11 18 18 H 1.48494 * 109.47269 * 240.00608 * 15 13 11 19 19 C 1.46905 * 110.99731 * 238.11013 * 9 8 4 20 20 C 1.53001 * 117.49660 * 124.79296 * 19 9 8 21 21 C 1.52991 * 117.50007 * 56.12906 * 19 9 8 22 22 N 1.31229 * 108.05162 * 0.22218 * 8 4 3 23 23 H 1.09002 * 109.47416 * 90.00190 * 1 2 3 24 24 H 1.08998 * 109.46991 * 209.99507 * 1 2 3 25 25 H 1.08999 * 109.47392 * 329.99597 * 1 2 3 26 26 H 1.08000 * 126.06838 * 359.97438 * 3 2 1 27 27 H 1.08992 * 109.47116 * 319.47572 * 10 9 8 28 28 H 1.09004 * 109.46607 * 79.46934 * 10 9 8 29 29 H 0.96997 * 120.00045 * 180.02562 * 14 13 11 30 30 H 1.08996 * 115.54519 * 270.45808 * 19 9 8 31 31 H 1.08996 * 117.49964 * 359.97438 * 20 19 9 32 32 H 1.08994 * 117.49934 * 145.01695 * 20 19 9 33 33 H 1.08995 * 117.49824 * 214.97404 * 21 19 9 34 34 H 1.09000 * 117.50301 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2577 1.0923 0.0000 4 6 3.5432 0.6720 0.0006 5 7 4.7433 1.5383 0.0013 6 8 4.6222 2.7466 0.0959 7 8 5.8521 1.0430 -0.0927 8 6 3.5372 -0.7323 0.0003 9 7 4.6666 -1.5595 0.0003 10 6 4.7596 -2.3235 1.2515 11 6 6.1718 -2.8167 1.4351 12 1 6.9248 -2.5853 0.6963 13 6 6.5025 -3.5623 2.5467 14 7 5.5856 -3.8435 3.4465 15 14 8.2531 -4.1731 2.7746 16 1 9.0868 -3.7243 1.6305 17 1 8.8087 -3.6231 4.0371 18 1 8.2555 -5.6567 2.8375 19 6 4.6631 -2.4549 -1.1644 20 6 5.8906 -2.4310 -2.0774 21 6 4.5726 -1.8118 -2.5496 22 7 2.2878 -1.1336 -0.0052 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.9246 2.1196 -0.0004 27 1 4.4867 -1.6825 2.0897 28 1 4.0801 -3.1747 1.2088 29 1 5.8184 -4.3678 4.2287 30 1 4.1618 -3.4119 -1.0200 31 1 6.7004 -1.7506 -1.8142 32 1 6.1965 -3.3721 -2.5342 33 1 4.0122 -2.3460 -3.3168 34 1 4.5161 -0.7243 -2.5970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231665825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:54 Heat of formation + Delta-G solvation = 121.020983 kcal Electronic energy + Delta-G solvation = -20641.303270 eV Core-core repulsion = 17388.192678 eV Total energy + Delta-G solvation = -3253.110592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -41.99169 -40.84334 -37.81327 -35.78794 -34.34947 -33.11038 -31.84586 -30.70030 -27.78220 -26.53886 -24.70209 -22.45487 -22.06760 -21.73367 -21.10618 -19.49920 -18.47859 -17.78143 -17.00513 -16.57613 -16.18485 -15.69422 -15.33119 -15.15169 -14.41564 -13.85036 -13.68536 -13.21747 -12.90291 -12.43405 -11.99889 -11.50632 -11.46880 -11.02568 -10.88159 -10.80989 -10.74037 -10.51659 -10.45353 -10.15241 -9.94518 -9.62695 -9.52206 -9.31811 -9.11002 -8.45518 -7.81069 -6.03200 -4.03866 0.72381 1.64892 1.70365 2.47317 2.64555 3.35241 3.42490 3.49185 3.95703 4.23372 4.35957 4.43677 4.53681 4.80093 4.90680 5.08211 5.24793 5.29505 5.35113 5.46089 5.57571 5.90177 5.98062 6.24771 6.37074 6.46266 6.72785 6.93316 7.04990 7.10593 7.31810 7.73484 7.85823 8.03175 8.36287 8.38908 9.04338 9.59799 11.08068 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.006647 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.116194 B = 4211.635451 C = 4358.515780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.352 5.352 3 C 0.139 3.861 4 C -0.174 4.174 5 N 0.069 4.931 6 O -0.219 6.219 7 O -0.108 6.108 8 C 0.332 3.668 9 N -0.425 5.425 10 C 0.206 3.794 11 C -0.498 4.498 12 H 0.073 0.927 13 C 0.055 3.945 14 N -0.902 5.902 15 Si 0.902 3.098 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.286 1.286 19 C 0.036 3.964 20 C -0.144 4.144 21 C -0.191 4.191 22 N -0.300 5.300 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.199 0.801 27 H 0.028 0.972 28 H 0.008 0.992 29 H 0.261 0.739 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.955 7.438 -9.181 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.131 5.131 3 C -0.016 4.016 4 C -0.273 4.273 5 N 0.587 4.413 6 O -0.418 6.418 7 O -0.337 6.337 8 C 0.074 3.926 9 N -0.150 5.150 10 C 0.083 3.917 11 C -0.536 4.536 12 H 0.092 0.908 13 C -0.146 4.146 14 N -0.542 5.542 15 Si 0.730 3.270 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.212 1.212 19 C -0.072 4.072 20 C -0.182 4.182 21 C -0.229 4.229 22 N -0.125 5.125 23 H 0.102 0.898 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.216 0.784 27 H 0.046 0.954 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.166 6.317 -9.016 16.407 hybrid contribution 0.833 0.094 0.479 0.965 sum -11.333 6.411 -8.537 15.570 Atomic orbital electron populations 1.22094 0.72282 1.05525 1.04189 1.48350 1.07354 1.03502 1.53932 1.22129 0.88913 0.94979 0.95542 1.21074 0.86095 0.91001 1.29139 1.42342 1.01595 1.00140 0.97198 1.94456 1.93370 0.97005 1.56980 1.94654 1.10089 1.78153 1.50781 1.20993 0.89210 0.90744 0.91689 1.60557 1.25320 1.23394 1.05737 1.19900 0.98662 0.90927 0.82220 1.21106 0.94195 1.31554 1.06776 0.90847 1.24977 0.97786 0.96213 0.95665 1.69974 1.33327 1.39605 1.11261 0.86354 0.84271 0.78073 0.78286 1.19264 1.21049 1.21206 1.22238 1.03438 0.95689 0.85823 1.22981 0.92048 1.02123 1.01033 1.23030 1.02772 0.99930 0.97128 1.78156 1.00893 1.06686 1.26807 0.89800 0.88239 0.88657 0.78371 0.95431 0.97378 0.92956 0.88832 0.87502 0.88959 0.89386 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.47 59.84 0.69 1.37 16 2 N -0.35 -4.59 4.01 -68.18 -0.27 -4.86 16 3 C 0.14 1.83 11.17 -17.24 -0.19 1.64 16 4 C -0.17 -3.18 7.12 -80.19 -0.57 -3.75 16 5 N 0.07 1.39 4.45 33.84 0.15 1.54 16 6 O -0.22 -4.15 19.03 -29.46 -0.56 -4.71 16 7 O -0.11 -2.42 18.43 -29.46 -0.54 -2.96 16 8 C 0.33 6.73 4.92 -154.54 -0.76 5.97 16 9 N -0.42 -9.59 3.92 -166.58 -0.65 -10.24 16 10 C 0.21 5.48 4.71 -4.98 -0.02 5.46 16 11 C -0.50 -14.05 8.99 -34.44 -0.31 -14.36 16 12 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 15 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.04 0.72 4.84 -67.71 -0.33 0.39 16 20 C -0.14 -2.53 10.46 -26.69 -0.28 -2.81 16 21 C -0.19 -3.15 9.85 -26.70 -0.26 -3.41 16 22 N -0.30 -5.47 12.52 31.41 0.39 -5.08 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.03 0.81 7.92 -51.93 -0.41 0.40 16 28 H 0.01 0.24 7.84 -51.93 -0.41 -0.17 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.09 1.91 7.89 -51.93 -0.41 1.50 16 31 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.46 7.99 -51.93 -0.41 1.05 16 LS Contribution 310.16 15.07 4.67 4.67 Total: -1.00 -34.20 310.16 -7.38 -41.58 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.15 Total: -2.60 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.14 Total: -8.04 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.35 Total: -44.83 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -1.10 Total: -7.68 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.20 -7.38 -41.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231665825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.606 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds