Wall clock time and date at job start Mon Mar 30 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34960 * 125.97037 * 2 1 4 4 C 1.35249 * 107.86710 * 179.97438 * 3 2 1 5 5 N 1.48016 * 126.07318 * 180.02562 * 4 3 2 6 6 O 1.21803 * 119.99888 * 5.13719 * 5 4 3 7 7 O 1.21802 * 120.00412 * 185.14237 * 5 4 3 8 8 C 1.40427 * 107.85933 * 0.02562 * 4 3 2 9 9 N 1.39994 * 125.97930 * 179.97438 * 8 4 3 10 10 C 1.46899 * 111.00038 * 114.15032 * 9 8 4 11 11 C 1.50702 * 109.47044 * 199.46770 * 10 9 8 12 12 H 1.07999 * 119.99540 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99770 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00256 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99850 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46942 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47010 * 119.99971 * 15 13 11 18 18 H 1.48494 * 109.47269 * 240.00608 * 15 13 11 19 19 C 1.46905 * 110.99731 * 238.11013 * 9 8 4 20 20 C 1.53001 * 117.49660 * 124.79296 * 19 9 8 21 21 C 1.52991 * 117.50007 * 56.12906 * 19 9 8 22 22 N 1.31229 * 108.05162 * 0.22218 * 8 4 3 23 23 H 1.09002 * 109.47416 * 90.00190 * 1 2 3 24 24 H 1.08998 * 109.46991 * 209.99507 * 1 2 3 25 25 H 1.08999 * 109.47392 * 329.99597 * 1 2 3 26 26 H 1.08000 * 126.06838 * 359.97438 * 3 2 1 27 27 H 1.08992 * 109.47116 * 319.47572 * 10 9 8 28 28 H 1.09004 * 109.46607 * 79.46934 * 10 9 8 29 29 H 0.96997 * 120.00045 * 180.02562 * 14 13 11 30 30 H 1.08996 * 115.54519 * 270.45808 * 19 9 8 31 31 H 1.08996 * 117.49964 * 359.97438 * 20 19 9 32 32 H 1.08994 * 117.49934 * 145.01695 * 20 19 9 33 33 H 1.08995 * 117.49824 * 214.97404 * 21 19 9 34 34 H 1.09000 * 117.50301 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2577 1.0923 0.0000 4 6 3.5432 0.6720 0.0006 5 7 4.7433 1.5383 0.0013 6 8 4.6222 2.7466 0.0959 7 8 5.8521 1.0430 -0.0927 8 6 3.5372 -0.7323 0.0003 9 7 4.6666 -1.5595 0.0003 10 6 4.7596 -2.3235 1.2515 11 6 6.1718 -2.8167 1.4351 12 1 6.9248 -2.5853 0.6963 13 6 6.5025 -3.5623 2.5467 14 7 5.5856 -3.8435 3.4465 15 14 8.2531 -4.1731 2.7746 16 1 9.0868 -3.7243 1.6305 17 1 8.8087 -3.6231 4.0371 18 1 8.2555 -5.6567 2.8375 19 6 4.6631 -2.4549 -1.1644 20 6 5.8906 -2.4310 -2.0774 21 6 4.5726 -1.8118 -2.5496 22 7 2.2878 -1.1336 -0.0052 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.9246 2.1196 -0.0004 27 1 4.4867 -1.6825 2.0897 28 1 4.0801 -3.1747 1.2088 29 1 5.8184 -4.3678 4.2287 30 1 4.1618 -3.4119 -1.0200 31 1 6.7004 -1.7506 -1.8142 32 1 6.1965 -3.3721 -2.5342 33 1 4.0122 -2.3460 -3.3168 34 1 4.5161 -0.7243 -2.5970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231665825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:51 Heat of formation + Delta-G solvation = 98.066795 kcal Electronic energy + Delta-G solvation = -20642.298638 eV Core-core repulsion = 17388.192678 eV Total energy + Delta-G solvation = -3254.105960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.34330 -42.26456 -39.34825 -37.30102 -35.86261 -34.87987 -33.38743 -32.08427 -29.26944 -28.18313 -26.04782 -24.45815 -23.44370 -23.09643 -22.47552 -20.96567 -19.86020 -19.25566 -18.64489 -18.39420 -17.45229 -17.24556 -16.63818 -16.54640 -16.17609 -15.51398 -14.97613 -14.45657 -13.85904 -13.81569 -13.69788 -13.35372 -12.84415 -12.72772 -12.70295 -12.40338 -12.33484 -12.14222 -12.04187 -12.01226 -11.48762 -11.43160 -11.12230 -10.79968 -10.64808 -10.37243 -9.54385 -8.24061 -6.33395 -0.64827 0.36861 0.44686 1.19775 1.31338 1.41144 1.42880 1.57796 2.37278 2.60209 2.85778 3.09743 3.20417 3.52121 3.75387 3.95217 4.03689 4.14700 4.35757 4.38317 4.41089 4.64411 4.64979 4.67283 4.89680 4.96236 5.09287 5.31308 5.35937 5.55565 5.64876 5.90076 5.98796 6.10489 6.42923 6.79983 6.83500 7.35399 8.87971 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.006647 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.116194 B = 4211.635451 C = 4358.515780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.333 5.333 3 C 0.178 3.822 4 C -0.212 4.212 5 N 0.076 4.924 6 O -0.172 6.172 7 O -0.201 6.201 8 C 0.305 3.695 9 N -0.436 5.436 10 C 0.233 3.767 11 C -0.512 4.512 12 H 0.069 0.931 13 C 0.002 3.998 14 N -0.937 5.937 15 Si 0.973 3.027 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.274 1.274 19 C 0.005 3.995 20 C -0.143 4.143 21 C -0.154 4.154 22 N -0.327 5.327 23 H 0.111 0.889 24 H 0.096 0.904 25 H 0.140 0.860 26 H 0.259 0.741 27 H -0.012 1.012 28 H -0.022 1.022 29 H 0.265 0.735 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 8.806 -10.346 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.112 5.112 3 C 0.021 3.979 4 C -0.312 4.312 5 N 0.587 4.413 6 O -0.387 6.387 7 O -0.406 6.406 8 C 0.046 3.954 9 N -0.160 5.160 10 C 0.108 3.892 11 C -0.551 4.551 12 H 0.087 0.913 13 C -0.195 4.195 14 N -0.578 5.578 15 Si 0.797 3.203 16 H -0.185 1.185 17 H -0.206 1.206 18 H -0.200 1.200 19 C -0.103 4.103 20 C -0.181 4.181 21 C -0.192 4.192 22 N -0.153 5.153 23 H 0.130 0.870 24 H 0.114 0.886 25 H 0.158 0.842 26 H 0.274 0.726 27 H 0.006 0.994 28 H -0.004 1.004 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.816 7.540 -10.223 18.768 hybrid contribution 1.013 -0.149 0.834 1.321 sum -12.803 7.391 -9.389 17.513 Atomic orbital electron populations 1.22754 0.68265 1.07644 1.06688 1.48920 1.09104 1.02073 1.51072 1.22952 0.86562 0.96986 0.91391 1.21302 0.86950 0.90174 1.32781 1.42534 1.01953 1.00322 0.96444 1.94380 1.93318 0.97233 1.53741 1.94681 1.11450 1.78487 1.55995 1.20981 0.89325 0.91373 0.93706 1.60266 1.28001 1.23134 1.04585 1.19320 0.97146 0.89314 0.83430 1.21355 0.94891 1.31831 1.06974 0.91308 1.25917 1.02295 0.96168 0.95153 1.70096 1.35586 1.40264 1.11829 0.85265 0.78777 0.77877 0.78343 1.18475 1.20577 1.19977 1.22257 1.05761 0.95617 0.86659 1.23040 0.91597 1.03012 1.00401 1.23014 1.01503 0.99576 0.95072 1.78032 1.00826 1.09378 1.27065 0.87027 0.88566 0.84150 0.72557 0.99427 1.00383 0.92618 0.90232 0.89315 0.86561 0.86217 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 11.47 127.77 1.46 2.23 16 2 N -0.33 -7.65 4.01 -369.62 -1.48 -9.14 16 3 C 0.18 4.03 11.17 83.52 0.93 4.96 16 4 C -0.21 -7.63 7.12 36.22 0.26 -7.37 16 5 N 0.08 3.06 4.45 -46.84 -0.21 2.85 16 6 O -0.17 -6.20 19.03 18.88 0.36 -5.84 16 7 O -0.20 -9.51 18.43 18.88 0.35 -9.17 16 8 C 0.30 12.66 4.92 133.38 0.66 13.31 16 9 N -0.44 -20.84 3.92 -680.92 -2.67 -23.51 16 10 C 0.23 13.28 4.71 85.56 0.40 13.69 16 11 C -0.51 -30.45 8.99 25.60 0.23 -30.22 16 12 H 0.07 4.06 7.81 -2.91 -0.02 4.04 16 13 C 0.00 0.14 5.46 84.65 0.46 0.60 16 14 N -0.94 -57.98 13.29 21.45 0.28 -57.70 16 15 Si 0.97 45.99 29.54 68.60 2.03 48.01 16 16 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 19 C 0.01 0.21 4.84 44.91 0.22 0.43 16 20 C -0.14 -5.11 10.46 30.62 0.32 -4.79 16 21 C -0.15 -5.02 9.85 30.62 0.30 -4.71 16 22 N -0.33 -11.88 12.52 -54.54 -0.68 -12.56 16 23 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.26 2.61 8.06 -2.91 -0.02 2.59 16 27 H -0.01 -0.78 7.92 -2.39 -0.02 -0.80 16 28 H -0.02 -1.32 7.84 -2.38 -0.02 -1.33 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.08 3.45 7.89 -2.39 -0.02 3.43 16 31 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.08 2.66 7.99 -2.39 -0.02 2.64 16 Total: -1.00 -81.57 310.16 4.33 -77.24 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: 1.11 Total: 1.69 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.25 Total: -11.87 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -4.76 Total: -100.06 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.71 Total: -15.01 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -81.57 4.33 -77.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231665825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.303 kcal (2) G-P(sol) polarization free energy of solvation -81.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds