Wall clock time and date at job start Mon Mar 30 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38360 * 120.00376 * 2 1 4 4 C 1.41185 * 120.29538 * 359.97438 * 3 2 1 5 5 N 1.30338 * 120.38815 * 180.02562 * 4 3 2 6 6 N 1.39867 * 121.01641 * 359.97438 * 5 4 3 7 7 C 1.46498 * 119.72013 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47430 * 269.98225 * 7 6 5 9 9 O 1.21283 * 119.99879 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00383 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00321 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47356 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99862 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00109 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99898 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48511 * 109.46906 * 60.00096 * 16 14 12 18 18 H 1.48503 * 109.47179 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47150 * 300.00179 * 16 14 12 20 20 C 1.34757 * 120.56405 * 0.02562 * 6 5 4 21 21 O 1.22142 * 120.20404 * 180.02562 * 20 6 5 22 22 C 1.38251 * 120.30281 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.47248 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47368 * 299.99957 * 1 2 3 25 25 H 1.09004 * 109.46935 * 60.00596 * 1 2 3 26 26 H 0.97009 * 119.99667 * 179.97438 * 2 1 3 27 27 H 1.07997 * 119.80669 * 359.74433 * 4 3 2 28 28 H 1.09008 * 109.46850 * 29.97844 * 7 6 5 29 29 H 1.09003 * 109.47632 * 149.97356 * 7 6 5 30 30 H 0.97003 * 119.99971 * 359.97438 * 10 8 7 31 31 H 1.08994 * 109.46938 * 299.99562 * 11 10 8 32 32 H 1.09003 * 109.46732 * 59.99754 * 11 10 8 33 33 H 0.96997 * 119.99754 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.48494 * 359.95868 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1568 1.1982 0.0000 4 6 1.4573 2.4246 -0.0005 5 7 2.1072 3.5543 -0.0010 6 7 3.5057 3.5813 -0.0005 7 6 4.2073 4.8674 -0.0005 8 6 4.4488 5.3079 -1.4213 9 8 4.0724 4.6155 -2.3432 10 7 5.0840 6.4707 -1.6676 11 6 5.3193 6.8987 -3.0488 12 6 6.0409 8.2217 -3.0488 13 1 6.2989 8.6961 -2.1135 14 6 6.3727 8.8260 -4.2429 15 7 6.0599 8.2475 -5.3818 16 14 7.2679 10.4655 -4.2428 17 1 8.5685 10.3194 -3.5411 18 1 7.5074 10.8988 -5.6429 19 1 6.4400 11.4815 -3.5445 20 6 4.2132 2.4344 0.0000 21 8 5.4342 2.4656 0.0009 22 6 3.5393 1.2054 -0.0005 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9500 -0.8401 0.0004 27 1 0.3774 2.4266 -0.0051 28 1 3.5995 5.6128 0.5126 29 1 5.1622 4.7604 0.5141 30 1 5.3854 7.0244 -0.9303 31 1 5.9268 6.1531 -3.5617 32 1 4.3645 7.0060 -3.5636 33 1 6.2931 8.6729 -6.2218 34 1 4.0921 0.2776 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232373977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:32 Heat of formation + Delta-G solvation = -1.559330 kcal Electronic energy + Delta-G solvation = -19453.842871 eV Core-core repulsion = 16195.416798 eV Total energy + Delta-G solvation = -3258.426073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 5.41 seconds Orbital eigenvalues (eV) -40.91976 -38.71285 -37.78702 -36.23385 -34.17222 -33.07218 -32.27768 -31.15593 -28.67854 -26.93188 -26.11346 -24.55916 -22.67565 -22.07054 -19.86760 -18.40820 -17.79080 -17.44385 -17.16141 -15.95188 -15.56579 -15.40210 -15.13158 -14.80997 -14.54090 -14.43749 -13.97327 -13.46430 -13.22421 -12.80250 -12.74502 -12.59857 -12.39662 -11.93099 -11.48457 -11.32038 -11.05742 -10.96860 -10.82755 -10.29243 -9.72118 -9.41882 -9.37774 -8.70257 -8.58189 -8.10511 -7.86614 -6.12834 -4.19871 0.59161 1.91149 2.14665 2.88527 3.28548 3.32943 3.34517 3.34720 3.56301 4.14413 4.20388 4.38936 4.44065 4.61531 4.80780 4.94255 5.20235 5.23020 5.33217 5.41826 5.49226 5.53224 5.69520 5.99321 6.09986 6.62604 7.03380 7.33357 7.44522 7.55808 7.68841 7.72842 8.00164 8.17496 8.62505 8.80011 9.09548 9.46239 10.97447 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.043942 B = 0.003523 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.045902 B = 7945.526856 C = 8119.461636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.726 5.726 3 C 0.233 3.767 4 C 0.046 3.954 5 N -0.178 5.178 6 N -0.400 5.400 7 C 0.105 3.895 8 C 0.489 3.511 9 O -0.546 6.546 10 N -0.708 5.708 11 C 0.251 3.749 12 C -0.543 4.543 13 H 0.064 0.936 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.529 3.471 21 O -0.549 6.549 22 C -0.299 4.299 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.409 0.591 27 H 0.189 0.811 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.392 0.608 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.266 0.734 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.017 -14.403 14.677 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.353 5.353 3 C 0.119 3.881 4 C -0.156 4.156 5 N 0.008 4.992 6 N -0.221 5.221 7 C -0.021 4.021 8 C 0.271 3.729 9 O -0.424 6.424 10 N -0.357 5.357 11 C 0.131 3.869 12 C -0.581 4.581 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.524 5.524 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.327 3.673 21 O -0.427 6.427 22 C -0.336 4.336 23 H 0.099 0.901 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.244 0.756 27 H 0.206 0.794 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.225 0.775 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.842 -13.802 13.772 23.347 hybrid contribution 0.891 -0.083 0.078 0.898 sum -11.951 -13.885 13.850 22.966 Atomic orbital electron populations 1.21785 0.79226 1.03540 1.01991 1.44334 1.06463 1.05481 1.79064 1.18855 0.91791 0.87196 0.90220 1.23649 1.01014 0.86951 1.03992 1.74945 0.91854 1.25452 1.06926 1.49094 1.01125 1.07922 1.63938 1.21550 0.99230 0.83826 0.97489 1.20571 0.79418 0.82432 0.90451 1.90675 1.51751 1.54172 1.45797 1.46372 1.56862 1.20544 1.11941 1.19112 0.96846 0.94766 0.76187 1.21191 1.38931 1.04948 0.93078 0.91827 1.24959 0.95718 0.98173 0.95199 1.69971 1.45942 1.38924 0.97518 0.86455 0.80053 0.83101 0.77173 1.20032 1.21099 1.20046 1.16911 0.88154 0.83843 0.78354 1.90979 1.12306 1.86335 1.53103 1.21759 0.91795 0.98937 1.21137 0.90057 0.91998 0.91905 0.75592 0.79434 0.86415 0.85712 0.77534 0.95512 0.95514 0.92405 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 9.94 59.84 0.59 0.85 16 2 N -0.73 -4.49 5.84 -65.30 -0.38 -4.87 16 3 C 0.23 2.40 6.67 -83.79 -0.56 1.84 16 4 C 0.05 0.48 10.59 -17.07 -0.18 0.30 16 5 N -0.18 -2.54 11.53 30.82 0.36 -2.19 16 6 N -0.40 -6.77 2.99 -64.78 -0.19 -6.96 16 7 C 0.10 1.71 6.17 -5.20 -0.03 1.67 16 8 C 0.49 10.60 7.90 -10.99 -0.09 10.52 16 9 O -0.55 -14.34 16.43 5.56 0.09 -14.25 16 10 N -0.71 -15.62 5.55 -61.47 -0.34 -15.96 16 11 C 0.25 6.93 5.43 -5.19 -0.03 6.90 16 12 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 13 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 16 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 C 0.53 9.54 7.47 -15.55 -0.12 9.42 16 21 O -0.55 -11.82 16.68 4.79 0.08 -11.74 16 22 C -0.30 -4.10 9.89 -38.86 -0.38 -4.49 16 23 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 24 H 0.06 0.15 7.95 -51.93 -0.41 -0.27 16 25 H 0.06 0.21 7.95 -51.93 -0.41 -0.21 16 26 H 0.41 1.92 8.83 -40.82 -0.36 1.56 16 27 H 0.19 1.14 6.77 -52.49 -0.36 0.78 16 28 H 0.12 1.48 8.14 -51.92 -0.42 1.05 16 29 H 0.13 1.88 7.41 -51.93 -0.38 1.50 16 30 H 0.39 7.20 8.32 -40.82 -0.34 6.86 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -39.16 305.71 -5.19 -44.35 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.91 Total: 3.50 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -1.21 Total: 13.28 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.18 Total: -55.97 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.17 Total: -25.99 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -39.16 -5.19 -44.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232373977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.794 kcal (2) G-P(sol) polarization free energy of solvation -39.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.41 seconds