Wall clock time and date at job start Mon Mar 30 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38360 * 120.00376 * 2 1 4 4 C 1.41185 * 120.29538 * 359.97438 * 3 2 1 5 5 N 1.30338 * 120.38815 * 180.02562 * 4 3 2 6 6 N 1.39867 * 121.01641 * 359.97438 * 5 4 3 7 7 C 1.46498 * 119.72013 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47430 * 269.98225 * 7 6 5 9 9 O 1.21283 * 119.99879 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00383 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00321 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47356 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99862 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00109 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99898 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48511 * 109.46906 * 60.00096 * 16 14 12 18 18 H 1.48503 * 109.47179 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47150 * 300.00179 * 16 14 12 20 20 C 1.34757 * 120.56405 * 0.02562 * 6 5 4 21 21 O 1.22142 * 120.20404 * 180.02562 * 20 6 5 22 22 C 1.38251 * 120.30281 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.47248 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47368 * 299.99957 * 1 2 3 25 25 H 1.09004 * 109.46935 * 60.00596 * 1 2 3 26 26 H 0.97009 * 119.99667 * 179.97438 * 2 1 3 27 27 H 1.07997 * 119.80669 * 359.74433 * 4 3 2 28 28 H 1.09008 * 109.46850 * 29.97844 * 7 6 5 29 29 H 1.09003 * 109.47632 * 149.97356 * 7 6 5 30 30 H 0.97003 * 119.99971 * 359.97438 * 10 8 7 31 31 H 1.08994 * 109.46938 * 299.99562 * 11 10 8 32 32 H 1.09003 * 109.46732 * 59.99754 * 11 10 8 33 33 H 0.96997 * 119.99754 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.48494 * 359.95868 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1568 1.1982 0.0000 4 6 1.4573 2.4246 -0.0005 5 7 2.1072 3.5543 -0.0010 6 7 3.5057 3.5813 -0.0005 7 6 4.2073 4.8674 -0.0005 8 6 4.4488 5.3079 -1.4213 9 8 4.0724 4.6155 -2.3432 10 7 5.0840 6.4707 -1.6676 11 6 5.3193 6.8987 -3.0488 12 6 6.0409 8.2217 -3.0488 13 1 6.2989 8.6961 -2.1135 14 6 6.3727 8.8260 -4.2429 15 7 6.0599 8.2475 -5.3818 16 14 7.2679 10.4655 -4.2428 17 1 8.5685 10.3194 -3.5411 18 1 7.5074 10.8988 -5.6429 19 1 6.4400 11.4815 -3.5445 20 6 4.2132 2.4344 0.0000 21 8 5.4342 2.4656 0.0009 22 6 3.5393 1.2054 -0.0005 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9500 -0.8401 0.0004 27 1 0.3774 2.4266 -0.0051 28 1 3.5995 5.6128 0.5126 29 1 5.1622 4.7604 0.5141 30 1 5.3854 7.0244 -0.9303 31 1 5.9268 6.1531 -3.5617 32 1 4.3645 7.0060 -3.5636 33 1 6.2931 8.6729 -6.2218 34 1 4.0921 0.2776 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232373977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:25 Heat of formation + Delta-G solvation = -35.454240 kcal Electronic energy + Delta-G solvation = -19455.312664 eV Core-core repulsion = 16195.416798 eV Total energy + Delta-G solvation = -3259.895867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.06568 -40.38269 -38.90078 -37.25880 -36.19498 -34.46735 -34.07130 -32.12016 -30.27635 -28.48329 -26.91198 -25.69472 -24.54372 -23.21421 -21.67129 -19.45166 -19.29545 -18.58901 -18.27534 -17.81389 -17.00756 -16.57425 -16.47395 -16.35940 -16.03407 -15.60018 -15.05344 -14.67944 -14.57383 -14.29660 -14.07776 -14.02707 -13.66184 -13.15865 -13.01934 -12.96443 -12.67274 -12.25495 -12.16940 -12.10056 -11.53677 -11.05660 -10.96849 -10.81075 -9.91973 -9.90906 -8.92206 -8.30062 -6.47506 -0.39145 0.88482 1.03890 1.42826 1.47829 1.55876 1.62120 2.22649 2.26807 2.41217 2.68065 3.04537 3.31842 3.42381 3.84249 3.94857 4.18156 4.25724 4.40970 4.58669 4.73272 4.76494 4.93534 5.03318 5.07560 5.08721 5.19246 5.43507 5.64419 5.81234 5.91931 6.43438 6.62087 6.65681 6.78543 6.97479 7.20558 7.39143 8.82311 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.043942 B = 0.003523 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.045902 B = 7945.526856 C = 8119.461636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.701 5.701 3 C 0.263 3.737 4 C 0.068 3.932 5 N -0.207 5.207 6 N -0.418 5.418 7 C 0.117 3.883 8 C 0.484 3.516 9 O -0.598 6.598 10 N -0.700 5.700 11 C 0.269 3.731 12 C -0.557 4.557 13 H 0.088 0.912 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.989 3.011 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.258 1.258 20 C 0.511 3.489 21 O -0.609 6.609 22 C -0.345 4.345 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.419 0.581 27 H 0.240 0.760 28 H 0.161 0.839 29 H 0.135 0.865 30 H 0.412 0.588 31 H -0.020 1.020 32 H -0.010 1.010 33 H 0.269 0.731 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.167 -14.291 16.619 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.325 5.325 3 C 0.143 3.857 4 C -0.134 4.134 5 N -0.019 5.019 6 N -0.236 5.236 7 C -0.008 4.008 8 C 0.270 3.730 9 O -0.479 6.479 10 N -0.351 5.351 11 C 0.146 3.854 12 C -0.595 4.595 13 H 0.106 0.894 14 C -0.198 4.198 15 N -0.571 5.571 16 Si 0.811 3.189 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.183 1.183 20 C 0.313 3.687 21 O -0.493 6.493 22 C -0.382 4.382 23 H 0.126 0.874 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.256 0.744 27 H 0.256 0.744 28 H 0.178 0.822 29 H 0.153 0.847 30 H 0.249 0.751 31 H -0.002 1.002 32 H 0.008 0.992 33 H 0.078 0.922 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.057 -13.729 15.780 25.773 hybrid contribution 1.246 -0.371 -0.533 1.405 sum -13.811 -14.100 15.247 24.941 Atomic orbital electron populations 1.22202 0.76497 1.05914 1.03249 1.44664 1.08173 1.04532 1.75177 1.18816 0.90768 0.88752 0.87320 1.24576 1.02965 0.85967 0.99938 1.74995 0.90297 1.27270 1.09332 1.49085 1.02361 1.07376 1.64820 1.21511 1.00978 0.85158 0.93182 1.21623 0.77611 0.81213 0.92555 1.90632 1.53625 1.55482 1.48164 1.46088 1.57169 1.21416 1.10438 1.18544 0.94173 0.94167 0.78518 1.21598 1.38787 1.04789 0.94329 0.89449 1.26131 0.96371 1.02732 0.94526 1.70147 1.47340 1.41172 0.98481 0.85150 0.78902 0.77473 0.77330 1.18768 1.21056 1.18252 1.17541 0.87841 0.85328 0.77972 1.90912 1.14559 1.87218 1.56575 1.21608 0.93434 0.97576 1.25593 0.87447 0.90040 0.91149 0.74432 0.74448 0.82184 0.84726 0.75118 1.00165 0.99205 0.92208 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.07 9.94 127.77 1.27 1.34 16 2 N -0.70 -5.98 5.84 -360.51 -2.10 -8.09 16 3 C 0.26 4.79 6.67 38.84 0.26 5.05 16 4 C 0.07 1.21 10.59 85.64 0.91 2.12 16 5 N -0.21 -5.59 11.53 -56.40 -0.65 -6.24 16 6 N -0.42 -14.26 2.99 -476.89 -1.43 -15.69 16 7 C 0.12 3.84 6.17 85.63 0.53 4.37 16 8 C 0.48 21.81 7.90 87.66 0.69 22.50 16 9 O -0.60 -33.15 16.43 -3.04 -0.05 -33.20 16 10 N -0.70 -31.87 5.55 -466.79 -2.59 -34.46 16 11 C 0.27 15.60 5.43 85.63 0.46 16.07 16 12 C -0.56 -31.40 9.28 25.60 0.24 -31.16 16 13 H 0.09 4.40 7.60 -2.91 -0.02 4.37 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 16 Si 0.99 43.37 29.54 68.60 2.03 45.39 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 C 0.51 19.23 7.47 84.71 0.63 19.86 16 21 O -0.61 -28.02 16.68 -5.78 -0.10 -28.11 16 22 C -0.34 -9.56 9.89 22.74 0.22 -9.33 16 23 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 24 H 0.08 -0.10 7.95 -2.39 -0.02 -0.12 16 25 H 0.07 0.09 7.95 -2.38 -0.02 0.07 16 26 H 0.42 2.50 8.83 -92.70 -0.82 1.68 16 27 H 0.24 1.59 6.77 -2.91 -0.02 1.57 16 28 H 0.16 3.76 8.14 -2.38 -0.02 3.74 16 29 H 0.14 4.14 7.41 -2.39 -0.02 4.12 16 30 H 0.41 15.10 8.32 -92.71 -0.77 14.33 16 31 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -93.13 305.71 0.63 -92.49 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -0.44 Total: 14.32 kcal Atomic # 6 Polarization: 25.70 SS G_CDS: 5.68 Total: 31.37 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -6.49 Total: -122.26 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -0.15 Total: -61.32 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -93.13 0.63 -92.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232373977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.039 kcal (2) G-P(sol) polarization free energy of solvation -93.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds