Wall clock time and date at job start Mon Mar 30 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47376 * 2 1 4 4 C 1.38366 * 120.00386 * 180.02562 * 3 2 1 5 5 C 1.41180 * 120.29635 * 0.02562 * 4 3 2 6 6 N 1.30334 * 120.39248 * 179.68530 * 5 4 3 7 7 N 1.39877 * 121.01243 * 0.58220 * 6 5 4 8 8 C 1.46491 * 119.71885 * 179.69637 * 7 6 5 9 9 C 1.50702 * 109.46957 * 269.72439 * 8 7 6 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.37101 * 120.00327 * 180.27606 * 11 9 8 13 13 H 1.08001 * 119.99426 * 0.02562 * 12 11 9 14 14 C 1.38942 * 120.00412 * 180.02562 * 12 11 9 15 15 N 1.31411 * 120.00042 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00013 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 89.99593 * 16 14 12 18 18 H 1.48494 * 109.47201 * 209.99761 * 16 14 12 19 19 H 1.48498 * 109.47011 * 329.99735 * 16 14 12 20 20 C 1.34753 * 120.55655 * 359.42148 * 7 6 5 21 21 O 1.22150 * 120.19856 * 180.29932 * 20 7 6 22 22 C 1.38254 * 120.30319 * 180.02562 * 4 3 2 23 23 H 1.09000 * 109.47166 * 59.99625 * 1 2 3 24 24 H 1.09002 * 109.47181 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46442 * 300.00209 * 1 2 3 26 26 H 1.09009 * 109.46660 * 240.00049 * 2 1 3 27 27 H 1.09000 * 109.47166 * 120.00375 * 2 1 3 28 28 H 0.97006 * 120.00176 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.80721 * 359.97438 * 5 4 3 30 30 H 1.09004 * 109.47166 * 149.72705 * 8 7 6 31 31 H 1.09000 * 109.47767 * 29.72773 * 8 7 6 32 32 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 33 33 H 0.97005 * 120.00014 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.48344 * 0.03404 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3788 1.6340 -0.0005 5 6 4.3018 0.5657 -0.0016 6 7 5.5835 0.8017 -0.0083 7 7 6.0752 2.1112 -0.0024 8 6 7.5216 2.3439 -0.0034 9 6 8.0186 2.4231 1.4171 10 8 7.2412 2.2971 2.3396 11 7 9.3279 2.6279 1.6625 12 6 9.7810 2.6943 2.9547 13 1 9.0888 2.5822 3.7761 14 6 11.1308 2.9060 3.2077 15 7 11.5651 2.9692 4.4463 16 14 12.3280 3.1008 1.7871 17 1 12.4272 4.5353 1.4165 18 1 13.6656 2.6012 2.1950 19 1 11.8428 2.3205 0.6204 20 6 5.2297 3.1605 -0.0012 21 8 5.6663 4.3013 -0.0015 22 6 3.8465 2.9350 0.0000 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.3881 2.1185 -0.0004 29 1 3.9436 -0.4532 -0.0016 30 1 7.7385 3.2805 -0.5170 31 1 8.0213 1.5232 -0.5179 32 1 9.9497 2.7284 0.9248 33 1 12.5074 3.1173 4.6230 34 1 3.1560 3.7654 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232375882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:51 Heat of formation + Delta-G solvation = 3.629489 kcal Electronic energy + Delta-G solvation = -19613.011179 eV Core-core repulsion = 16354.810110 eV Total energy + Delta-G solvation = -3258.201069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.74440 -38.44132 -37.72450 -36.29123 -34.07590 -33.35866 -31.77978 -31.55734 -29.62762 -27.64023 -24.91439 -24.30771 -23.26053 -21.97320 -19.58350 -18.59835 -17.97766 -17.46925 -17.07025 -16.31373 -15.57314 -15.36841 -15.18514 -14.89608 -14.53930 -14.03305 -13.66595 -13.23388 -13.16303 -12.83772 -12.66576 -12.62892 -12.29376 -12.19727 -12.02530 -11.76077 -11.13802 -11.00598 -10.88114 -10.56185 -9.95459 -9.56011 -9.54199 -9.03781 -8.25383 -8.16806 -7.96581 -6.28375 -3.80010 0.75050 2.06660 2.34350 2.93853 3.06416 3.11848 3.19031 3.71235 3.75296 4.13695 4.31684 4.49241 4.53221 4.60504 4.70666 4.83086 4.98893 5.22996 5.24514 5.41176 5.53182 5.59250 5.65525 5.68475 5.84054 5.87615 6.17074 6.29066 6.76603 7.16565 7.57869 7.90647 8.14056 8.35165 8.60404 8.95954 9.42889 9.80335 10.84570 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.041149 B = 0.003963 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.294918 B = 7064.186570 C = 7240.701885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.723 5.723 4 C 0.234 3.766 5 C 0.040 3.960 6 N -0.176 5.176 7 N -0.394 5.394 8 C 0.111 3.889 9 C 0.441 3.559 10 O -0.567 6.567 11 N -0.583 5.583 12 C -0.304 4.304 13 H 0.119 0.881 14 C 0.042 3.958 15 N -0.880 5.880 16 Si 0.880 3.120 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.268 1.268 20 C 0.529 3.471 21 O -0.550 6.550 22 C -0.299 4.299 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.406 0.594 29 H 0.187 0.813 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.372 0.628 33 H 0.274 0.726 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.457 -7.796 -14.139 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.352 5.352 4 C 0.121 3.879 5 C -0.161 4.161 6 N 0.011 4.989 7 N -0.214 5.214 8 C -0.015 4.015 9 C 0.225 3.775 10 O -0.449 6.449 11 N -0.223 5.223 12 C -0.432 4.432 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.520 5.520 16 Si 0.706 3.294 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.193 1.193 20 C 0.327 3.673 21 O -0.429 6.429 22 C -0.337 4.337 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.242 0.758 29 H 0.203 0.797 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.205 0.795 33 H 0.084 0.916 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.657 -7.810 -13.359 23.478 hybrid contribution 0.064 0.847 -0.798 1.166 sum -17.593 -6.962 -14.157 23.631 Atomic orbital electron populations 1.21971 0.94084 1.03401 1.02814 1.21530 0.95270 0.82858 1.02047 1.44604 1.03129 1.08294 1.79222 1.18826 0.85128 0.93727 0.90267 1.23597 0.88182 0.99701 1.04647 1.74925 1.15071 1.02408 1.06534 1.49052 1.07652 1.01322 1.63364 1.21423 0.77332 1.04492 0.98254 1.19870 0.83250 0.84450 0.89917 1.90575 1.54912 1.54098 1.45282 1.42101 1.06601 1.65189 1.08360 1.19419 0.94076 1.46763 0.82982 0.86339 1.25037 0.96885 0.97470 0.96692 1.69625 1.15900 1.48338 1.18156 0.86655 0.81547 0.79165 0.81988 1.19471 1.20141 1.19314 1.16883 0.87125 0.84859 0.78405 1.90967 1.78453 1.20258 1.53210 1.21743 0.95086 0.95580 1.21263 0.91857 0.90556 0.91757 0.91371 0.91253 0.75764 0.79663 0.86561 0.87302 0.79479 0.91574 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.03 37.16 0.37 -0.18 16 2 C 0.11 0.52 5.63 -4.04 -0.02 0.50 16 3 N -0.72 -5.41 5.68 -58.53 -0.33 -5.74 16 4 C 0.23 2.72 6.67 -83.79 -0.56 2.16 16 5 C 0.04 0.48 10.59 -17.07 -0.18 0.30 16 6 N -0.18 -2.81 11.53 30.82 0.36 -2.46 16 7 N -0.39 -7.46 2.99 -64.78 -0.19 -7.65 16 8 C 0.11 2.10 6.17 -5.20 -0.03 2.07 16 9 C 0.44 10.89 7.85 -10.98 -0.09 10.81 16 10 O -0.57 -16.53 16.01 5.55 0.09 -16.44 16 11 N -0.58 -14.65 5.09 -10.96 -0.06 -14.70 16 12 C -0.30 -8.93 10.16 -14.93 -0.15 -9.09 16 13 H 0.12 3.99 7.39 -52.49 -0.39 3.60 16 14 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 15 N -0.88 -26.31 13.96 55.50 0.77 -25.53 16 16 Si 0.88 19.82 27.74 -169.99 -4.71 15.11 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 20 C 0.53 10.46 7.47 -15.55 -0.12 10.34 16 21 O -0.55 -12.80 16.68 4.78 0.08 -12.72 16 22 C -0.30 -4.53 9.89 -38.86 -0.38 -4.92 16 23 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.27 7.95 -51.92 -0.41 -0.14 16 27 H 0.07 0.34 7.95 -51.93 -0.41 -0.07 16 28 H 0.41 2.48 8.47 -40.82 -0.35 2.14 16 29 H 0.19 1.38 6.77 -52.48 -0.36 1.03 16 30 H 0.12 2.05 7.40 -51.93 -0.38 1.67 16 31 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.37 8.08 5.76 -40.82 -0.24 7.85 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 300.99 15.07 4.54 4.54 Total: -1.00 -39.04 300.99 -4.53 -43.57 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.82 Total: 8.94 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -1.26 Total: 13.09 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.55 Total: -56.09 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: 0.17 Total: -29.16 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.71 Total: 15.11 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -39.04 -4.53 -43.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232375882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.203 kcal (2) G-P(sol) polarization free energy of solvation -39.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds