Wall clock time and date at job start Mon Mar 30 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47376 * 2 1 4 4 C 1.38366 * 120.00386 * 180.02562 * 3 2 1 5 5 C 1.41180 * 120.29635 * 0.02562 * 4 3 2 6 6 N 1.30334 * 120.39248 * 179.68530 * 5 4 3 7 7 N 1.39877 * 121.01243 * 0.58220 * 6 5 4 8 8 C 1.46491 * 119.71885 * 179.69637 * 7 6 5 9 9 C 1.50702 * 109.46957 * 269.72439 * 8 7 6 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.37101 * 120.00327 * 180.27606 * 11 9 8 13 13 H 1.08001 * 119.99426 * 0.02562 * 12 11 9 14 14 C 1.38942 * 120.00412 * 180.02562 * 12 11 9 15 15 N 1.31411 * 120.00042 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00013 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 89.99593 * 16 14 12 18 18 H 1.48494 * 109.47201 * 209.99761 * 16 14 12 19 19 H 1.48498 * 109.47011 * 329.99735 * 16 14 12 20 20 C 1.34753 * 120.55655 * 359.42148 * 7 6 5 21 21 O 1.22150 * 120.19856 * 180.29932 * 20 7 6 22 22 C 1.38254 * 120.30319 * 180.02562 * 4 3 2 23 23 H 1.09000 * 109.47166 * 59.99625 * 1 2 3 24 24 H 1.09002 * 109.47181 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46442 * 300.00209 * 1 2 3 26 26 H 1.09009 * 109.46660 * 240.00049 * 2 1 3 27 27 H 1.09000 * 109.47166 * 120.00375 * 2 1 3 28 28 H 0.97006 * 120.00176 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.80721 * 359.97438 * 5 4 3 30 30 H 1.09004 * 109.47166 * 149.72705 * 8 7 6 31 31 H 1.09000 * 109.47767 * 29.72773 * 8 7 6 32 32 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 33 33 H 0.97005 * 120.00014 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.48344 * 0.03404 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3788 1.6340 -0.0005 5 6 4.3018 0.5657 -0.0016 6 7 5.5835 0.8017 -0.0083 7 7 6.0752 2.1112 -0.0024 8 6 7.5216 2.3439 -0.0034 9 6 8.0186 2.4231 1.4171 10 8 7.2412 2.2971 2.3396 11 7 9.3279 2.6279 1.6625 12 6 9.7810 2.6943 2.9547 13 1 9.0888 2.5822 3.7761 14 6 11.1308 2.9060 3.2077 15 7 11.5651 2.9692 4.4463 16 14 12.3280 3.1008 1.7871 17 1 12.4272 4.5353 1.4165 18 1 13.6656 2.6012 2.1950 19 1 11.8428 2.3205 0.6204 20 6 5.2297 3.1605 -0.0012 21 8 5.6663 4.3013 -0.0015 22 6 3.8465 2.9350 0.0000 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.3881 2.1185 -0.0004 29 1 3.9436 -0.4532 -0.0016 30 1 7.7385 3.2805 -0.5170 31 1 8.0213 1.5232 -0.5179 32 1 9.9497 2.7284 0.9248 33 1 12.5074 3.1173 4.6230 34 1 3.1560 3.7654 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232375882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:48 Heat of formation + Delta-G solvation = -29.848029 kcal Electronic energy + Delta-G solvation = -19614.462873 eV Core-core repulsion = 16354.810110 eV Total energy + Delta-G solvation = -3259.652763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -42.00772 -40.20030 -38.98486 -37.43284 -36.12105 -34.51239 -33.80768 -32.70823 -30.63577 -29.01342 -26.55270 -25.58210 -24.18958 -22.92723 -21.55686 -20.58513 -19.11495 -18.51829 -18.30585 -18.09733 -16.93224 -16.42223 -16.33206 -16.16035 -15.79127 -15.77429 -15.24977 -14.76417 -14.52901 -14.21340 -14.18059 -13.87098 -13.34616 -13.10536 -12.91571 -12.89099 -12.67347 -12.45631 -12.07731 -11.99828 -11.73146 -11.58085 -10.92953 -10.77988 -10.32109 -9.83235 -8.90635 -8.45627 -6.08029 -0.35703 0.91933 1.09638 1.29679 1.35202 1.44690 1.81878 2.17796 2.21463 2.45220 2.90885 3.08708 3.35153 3.45149 3.93838 4.04219 4.11981 4.22442 4.30576 4.34270 4.52659 4.61398 4.79997 4.91521 5.05474 5.11365 5.11630 5.33356 5.48829 5.85939 5.94461 6.43540 6.50406 6.69442 6.78499 7.01288 7.28474 7.82491 8.71869 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.041149 B = 0.003963 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.294918 B = 7064.186570 C = 7240.701885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.698 5.698 4 C 0.265 3.735 5 C 0.064 3.936 6 N -0.206 5.206 7 N -0.413 5.413 8 C 0.121 3.879 9 C 0.437 3.563 10 O -0.620 6.620 11 N -0.580 5.580 12 C -0.333 4.333 13 H 0.052 0.948 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.226 1.226 20 C 0.511 3.489 21 O -0.610 6.610 22 C -0.343 4.343 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.416 0.584 29 H 0.239 0.761 30 H 0.128 0.872 31 H 0.152 0.848 32 H 0.393 0.607 33 H 0.282 0.718 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.476 -10.000 -17.222 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.146 3.854 5 C -0.138 4.138 6 N -0.018 5.018 7 N -0.231 5.231 8 C -0.005 4.005 9 C 0.224 3.776 10 O -0.505 6.505 11 N -0.221 5.221 12 C -0.462 4.462 13 H 0.070 0.930 14 C -0.211 4.211 15 N -0.571 5.571 16 Si 0.784 3.216 17 H -0.184 1.184 18 H -0.194 1.194 19 H -0.149 1.149 20 C 0.313 3.687 21 O -0.494 6.494 22 C -0.380 4.380 23 H 0.085 0.915 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.253 0.747 29 H 0.254 0.746 30 H 0.146 0.854 31 H 0.170 0.830 32 H 0.229 0.771 33 H 0.091 0.909 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.749 -10.066 -16.468 26.907 hybrid contribution 0.025 1.326 0.277 1.355 sum -18.723 -8.740 -16.191 26.250 Atomic orbital electron populations 1.21961 0.92721 1.04407 1.02842 1.21930 0.96501 0.80871 1.03544 1.44938 1.01589 1.10453 1.75389 1.18758 0.86896 0.92386 0.87347 1.24546 0.87036 1.01835 1.00361 1.74971 1.17084 1.00644 1.09091 1.49026 1.07302 1.02353 1.64448 1.21372 0.78406 1.06895 0.93785 1.21066 0.82514 0.81907 0.92126 1.90532 1.56267 1.55859 1.47889 1.41896 1.07433 1.65470 1.07273 1.18979 0.94051 1.49592 0.83547 0.92976 1.26156 0.98627 0.95631 1.00667 1.69799 1.17028 1.48763 1.21468 0.85365 0.77714 0.80176 0.78327 1.18374 1.19368 1.14861 1.17543 0.88809 0.84367 0.78007 1.90899 1.79562 1.22273 1.56654 1.21587 0.93269 0.97603 1.25565 0.91472 0.89070 0.92175 0.89118 0.90348 0.74666 0.74559 0.85435 0.83015 0.77084 0.90886 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.41 10.03 71.98 0.72 0.31 16 2 C 0.09 0.45 5.63 86.38 0.49 0.94 16 3 N -0.70 -7.84 5.68 -339.10 -1.93 -9.77 16 4 C 0.26 5.50 6.67 38.84 0.26 5.76 16 5 C 0.06 1.32 10.59 85.64 0.91 2.23 16 6 N -0.21 -6.23 11.53 -56.41 -0.65 -6.88 16 7 N -0.41 -15.65 2.99 -476.91 -1.43 -17.08 16 8 C 0.12 4.55 6.17 85.64 0.53 5.08 16 9 C 0.44 22.24 7.85 87.66 0.69 22.93 16 10 O -0.62 -38.19 16.01 -3.07 -0.05 -38.24 16 11 N -0.58 -29.56 5.09 -306.98 -1.56 -31.12 16 12 C -0.33 -20.56 10.16 84.04 0.85 -19.71 16 13 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 14 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 15 N -0.93 -57.63 13.96 21.66 0.30 -57.32 16 16 Si 0.97 40.05 27.74 68.60 1.90 41.95 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 19 H -0.23 -7.79 6.52 99.48 0.65 -7.15 16 20 C 0.51 20.84 7.47 84.71 0.63 21.47 16 21 O -0.61 -29.98 16.68 -5.81 -0.10 -30.08 16 22 C -0.34 -10.39 9.89 22.74 0.22 -10.17 16 23 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 24 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.06 0.23 8.14 -2.39 -0.02 0.22 16 26 H 0.09 0.17 7.95 -2.38 -0.02 0.15 16 27 H 0.08 0.36 7.95 -2.39 -0.02 0.34 16 28 H 0.42 3.72 8.47 -92.70 -0.79 2.94 16 29 H 0.24 2.18 6.77 -2.91 -0.02 2.16 16 30 H 0.13 4.48 7.40 -2.38 -0.02 4.47 16 31 H 0.15 4.27 8.14 -2.39 -0.02 4.26 16 32 H 0.39 16.43 5.76 -92.71 -0.53 15.90 16 33 H 0.28 15.82 8.31 -92.70 -0.77 15.05 16 34 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -95.26 300.99 2.04 -93.22 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: -0.23 Total: 26.68 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 5.77 Total: 28.65 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -5.26 Total: -122.18 kcal Atomic # 8 Polarization: -68.17 SS G_CDS: -0.15 Total: -68.32 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.90 Total: 41.95 kcal Total: -95.26 2.04 -93.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232375882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.372 kcal (2) G-P(sol) polarization free energy of solvation -95.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds