Wall clock time and date at job start Mon Mar 30 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.50695 * 109.47443 * 90.00099 * 4 3 2 6 6 H 1.08001 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00480 * 179.97438 * 5 4 3 8 8 N 1.31505 * 120.00447 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99662 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46974 * 90.00094 * 9 7 5 11 11 H 1.48500 * 109.47191 * 210.00006 * 9 7 5 12 12 H 1.48501 * 109.47289 * 330.00624 * 9 7 5 13 13 C 1.38988 * 119.99641 * 89.99692 * 3 2 1 14 14 C 1.39009 * 119.66189 * 4.73458 * 13 3 2 15 15 C 1.38507 * 119.25592 * 179.74940 * 14 13 3 16 16 N 1.48013 * 120.70237 * 180.24046 * 15 14 13 17 17 O 1.21802 * 119.99928 * 180.27395 * 16 15 14 18 18 O 1.21799 * 120.00187 * 0.27383 * 16 15 14 19 19 C 1.38547 * 118.59214 * 0.50675 * 15 14 13 20 20 C 1.38963 * 119.26205 * 359.73275 * 19 15 14 21 21 N 1.38997 * 119.65777 * 179.97438 * 20 19 15 22 22 N 1.32467 * 119.65652 * 184.99706 * 13 3 2 23 23 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 25 25 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 27 27 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 28 28 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 29 29 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 30 30 H 0.97003 * 120.00287 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.36830 * 359.97438 * 14 13 3 32 32 H 1.07999 * 120.37148 * 179.70585 * 19 15 14 33 33 H 0.97005 * 119.99442 * 180.02562 * 21 20 19 34 34 H 0.97000 * 119.99911 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1157 2.7248 -1.0961 7 6 0.9952 3.5057 -2.8774 8 7 -0.1005 4.1261 -3.2568 9 14 2.5366 3.6058 -3.9280 10 1 2.5416 2.4892 -4.9070 11 1 2.5575 4.9009 -4.6542 12 1 3.7360 3.5066 -3.0580 13 6 2.2499 2.0364 1.2037 14 6 2.1110 1.3445 2.4013 15 6 2.3489 2.0042 3.5957 16 7 2.2156 1.2971 4.8892 17 8 2.4230 1.8911 5.9322 18 8 1.8984 0.1213 4.9107 19 6 2.7088 3.3415 3.5543 20 6 2.8253 3.9757 2.3234 21 7 3.1854 5.3173 2.2723 22 7 2.5957 3.3151 1.1980 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.0644 2.7985 -1.1383 29 1 2.5506 1.3452 -2.0283 30 1 -0.1085 4.6354 -4.0823 31 1 1.8243 0.3033 2.4003 32 1 2.8964 3.8850 4.4685 33 1 3.2677 5.7650 1.4157 34 1 3.3543 5.8057 3.0931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233445933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:17 Heat of formation + Delta-G solvation = 50.232888 kcal Electronic energy + Delta-G solvation = -20247.470629 eV Core-core repulsion = 16991.290435 eV Total energy + Delta-G solvation = -3256.180194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04725 -40.16738 -37.11655 -36.42101 -34.39023 -32.72595 -32.68424 -30.26684 -29.33485 -27.21411 -26.61239 -23.62843 -22.84746 -21.90138 -20.76520 -18.85503 -18.70036 -17.41866 -17.17213 -16.96064 -16.33540 -15.97909 -15.38476 -14.98262 -14.64377 -14.18337 -13.85894 -13.12424 -12.94622 -12.52927 -12.31576 -11.84790 -11.49673 -11.43525 -11.24136 -11.17855 -11.05711 -11.03281 -10.72162 -10.57681 -10.40273 -9.99207 -9.55557 -9.28949 -8.68493 -8.26670 -7.12717 -6.17389 -4.16062 0.05608 1.48699 1.53502 1.77108 3.15981 3.19625 3.27872 3.28774 3.71927 3.99390 4.29648 4.87819 4.94070 5.05598 5.12201 5.16215 5.32320 5.51986 5.60095 5.70527 5.93776 5.99991 6.06894 6.27981 6.45994 6.55146 6.76950 6.77570 7.16976 7.29871 7.48745 7.69772 7.78068 7.80774 8.38231 8.51872 8.87218 9.41896 10.95629 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.006106 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.796669 B = 4584.540077 C = 5379.666391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.120 3.880 3 N -0.568 5.568 4 C 0.222 3.778 5 C -0.523 4.523 6 H 0.076 0.924 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.475 3.525 14 C -0.252 4.252 15 C 0.085 3.915 16 N 0.029 4.971 17 O -0.161 6.161 18 O -0.157 6.157 19 C -0.268 4.268 20 C 0.464 3.536 21 N -0.841 5.841 22 N -0.546 5.546 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.411 0.589 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -2.989 9.572 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.004 4.004 3 N -0.274 5.274 4 C 0.102 3.898 5 C -0.561 4.561 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.233 3.767 14 C -0.281 4.281 15 C -0.005 4.005 16 N 0.550 4.450 17 O -0.377 6.377 18 O -0.374 6.374 19 C -0.297 4.297 20 C 0.221 3.779 21 N -0.385 5.385 22 N -0.274 5.274 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.241 0.759 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.543 -2.275 7.785 10.421 hybrid contribution 0.544 0.047 0.399 0.676 sum 7.087 -2.229 8.184 11.053 Atomic orbital electron populations 1.22236 0.95553 1.01345 1.03886 1.21532 0.95101 0.81508 1.02237 1.47000 1.64477 1.12437 1.03486 1.19780 0.98376 0.92504 0.79145 1.21300 0.97180 1.30605 1.07033 0.90547 1.24836 0.95843 0.94915 0.97319 1.69887 1.27154 1.32926 1.23513 0.86917 0.84284 0.77927 0.80950 1.20180 1.21040 1.18963 1.17570 0.87097 0.86327 0.85674 1.20913 1.14566 1.03152 0.89432 1.20569 1.04793 0.92652 0.82466 1.43661 0.97506 1.00882 1.02972 1.94501 1.53176 1.68499 1.21517 1.94518 1.49133 0.99619 1.94162 1.20551 1.16533 0.93508 0.99139 1.17596 0.87284 0.86167 0.86871 1.42169 1.76838 1.07268 1.12258 1.66815 1.23926 1.08153 1.28472 0.93014 0.90162 0.92368 0.90031 0.91242 0.93755 0.95637 0.92565 0.82889 0.83522 0.75869 0.76118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.12 1.82 6.01 -4.04 -0.02 1.80 16 3 N -0.57 -10.83 2.57 -175.24 -0.45 -11.28 16 4 C 0.22 4.93 4.25 -5.20 -0.02 4.91 16 5 C -0.52 -13.77 9.48 -34.44 -0.33 -14.09 16 6 H 0.08 2.25 7.67 -52.49 -0.40 1.85 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -26.27 13.96 55.43 0.77 -25.50 16 9 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 13 C 0.48 8.91 7.36 -155.02 -1.14 7.77 16 14 C -0.25 -4.19 8.79 -39.20 -0.34 -4.53 16 15 C 0.08 1.37 6.89 -79.74 -0.55 0.82 16 16 N 0.03 0.47 4.45 34.07 0.15 0.63 16 17 O -0.16 -2.60 18.54 -29.46 -0.55 -3.15 16 18 O -0.16 -2.61 18.54 -29.46 -0.55 -3.16 16 19 C -0.27 -3.99 9.45 -39.20 -0.37 -4.36 16 20 C 0.46 7.31 7.74 -155.01 -1.20 6.11 16 21 N -0.84 -9.89 9.07 31.11 0.28 -9.60 16 22 N -0.55 -10.47 9.19 -11.62 -0.11 -10.58 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.08 1.51 7.26 -51.93 -0.38 1.13 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.14 7.89 -51.93 -0.41 0.73 16 27 H 0.07 0.89 5.98 -51.93 -0.31 0.58 16 28 H 0.04 1.03 6.51 -51.93 -0.34 0.70 16 29 H 0.03 0.54 7.32 -51.93 -0.38 0.16 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.15 2.30 5.65 -52.49 -0.30 2.00 16 32 H 0.15 1.83 7.69 -52.49 -0.40 1.42 16 33 H 0.41 4.84 8.95 -40.82 -0.37 4.48 16 34 H 0.41 3.32 8.82 -40.82 -0.36 2.96 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -30.56 298.55 -7.96 -38.52 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -3.66 Total: 6.10 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.70 Total: -1.97 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.65 Total: -56.33 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -1.09 Total: -6.31 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.56 -7.96 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233445933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.752 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds