Wall clock time and date at job start Mon Mar 30 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.50695 * 109.47443 * 90.00099 * 4 3 2 6 6 H 1.08001 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00480 * 179.97438 * 5 4 3 8 8 N 1.31505 * 120.00447 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99662 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46974 * 90.00094 * 9 7 5 11 11 H 1.48500 * 109.47191 * 210.00006 * 9 7 5 12 12 H 1.48501 * 109.47289 * 330.00624 * 9 7 5 13 13 C 1.38988 * 119.99641 * 89.99692 * 3 2 1 14 14 C 1.39009 * 119.66189 * 4.73458 * 13 3 2 15 15 C 1.38507 * 119.25592 * 179.74940 * 14 13 3 16 16 N 1.48013 * 120.70237 * 180.24046 * 15 14 13 17 17 O 1.21802 * 119.99928 * 180.27395 * 16 15 14 18 18 O 1.21799 * 120.00187 * 0.27383 * 16 15 14 19 19 C 1.38547 * 118.59214 * 0.50675 * 15 14 13 20 20 C 1.38963 * 119.26205 * 359.73275 * 19 15 14 21 21 N 1.38997 * 119.65777 * 179.97438 * 20 19 15 22 22 N 1.32467 * 119.65652 * 184.99706 * 13 3 2 23 23 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 25 25 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 27 27 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 28 28 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 29 29 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 30 30 H 0.97003 * 120.00287 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.36830 * 359.97438 * 14 13 3 32 32 H 1.07999 * 120.37148 * 179.70585 * 19 15 14 33 33 H 0.97005 * 119.99442 * 180.02562 * 21 20 19 34 34 H 0.97000 * 119.99911 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1157 2.7248 -1.0961 7 6 0.9952 3.5057 -2.8774 8 7 -0.1005 4.1261 -3.2568 9 14 2.5366 3.6058 -3.9280 10 1 2.5416 2.4892 -4.9070 11 1 2.5575 4.9009 -4.6542 12 1 3.7360 3.5066 -3.0580 13 6 2.2499 2.0364 1.2037 14 6 2.1110 1.3445 2.4013 15 6 2.3489 2.0042 3.5957 16 7 2.2156 1.2971 4.8892 17 8 2.4230 1.8911 5.9322 18 8 1.8984 0.1213 4.9107 19 6 2.7088 3.3415 3.5543 20 6 2.8253 3.9757 2.3234 21 7 3.1854 5.3173 2.2723 22 7 2.5957 3.3151 1.1980 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.0644 2.7985 -1.1383 29 1 2.5506 1.3452 -2.0283 30 1 -0.1085 4.6354 -4.0823 31 1 1.8243 0.3033 2.4003 32 1 2.8964 3.8850 4.4685 33 1 3.2677 5.7650 1.4157 34 1 3.3543 5.8057 3.0931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233445933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:17 Heat of formation + Delta-G solvation = 31.244675 kcal Electronic energy + Delta-G solvation = -20248.294020 eV Core-core repulsion = 16991.290435 eV Total energy + Delta-G solvation = -3257.003585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.32855 -41.46377 -38.46406 -37.71041 -35.62358 -34.67058 -33.97174 -31.78153 -30.70856 -28.66318 -28.04336 -24.90629 -24.50492 -23.26300 -22.11816 -20.14154 -19.99832 -19.01409 -18.69564 -18.40420 -17.59460 -17.22611 -16.72629 -16.44387 -15.96387 -15.67986 -15.28723 -14.65905 -14.37998 -14.22016 -13.67298 -13.45761 -12.95533 -12.80045 -12.73208 -12.49657 -12.37917 -12.32509 -12.31634 -12.01735 -11.84519 -11.63934 -11.43435 -10.76873 -10.64933 -9.50620 -8.47646 -8.26054 -6.29258 -1.22017 0.20477 0.26157 0.48795 1.36608 1.38967 1.48918 1.94071 2.35327 2.54257 2.69513 3.08313 3.61645 3.70693 3.83735 3.92556 4.12089 4.30476 4.37176 4.50367 4.73926 4.74679 4.78882 4.90502 4.99518 5.04193 5.28702 5.42818 5.51945 5.84935 6.11720 6.26249 6.46207 6.50860 6.62358 6.73183 7.28055 7.34406 8.90450 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.006106 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.796669 B = 4584.540077 C = 5379.666391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.581 5.581 4 C 0.234 3.766 5 C -0.514 4.514 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.950 5.950 9 Si 0.944 3.056 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.248 1.248 13 C 0.458 3.542 14 C -0.254 4.254 15 C 0.075 3.925 16 N 0.029 4.971 17 O -0.152 6.152 18 O -0.167 6.167 19 C -0.251 4.251 20 C 0.456 3.544 21 N -0.823 5.823 22 N -0.584 5.584 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.166 0.834 32 H 0.175 0.825 33 H 0.412 0.588 34 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.501 -3.478 10.541 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.289 5.289 4 C 0.112 3.888 5 C -0.553 4.553 6 H 0.047 0.953 7 C -0.185 4.185 8 N -0.591 5.591 9 Si 0.768 3.232 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.171 1.171 13 C 0.218 3.782 14 C -0.282 4.282 15 C -0.014 4.014 16 N 0.550 4.450 17 O -0.371 6.371 18 O -0.381 6.381 19 C -0.280 4.280 20 C 0.212 3.788 21 N -0.368 5.368 22 N -0.313 5.313 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.192 0.808 33 H 0.243 0.757 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 8.536 -2.776 8.805 12.574 hybrid contribution -0.127 0.287 0.273 0.416 sum 8.409 -2.489 9.078 12.622 Atomic orbital electron populations 1.22144 0.96338 1.02610 1.01077 1.21783 0.94375 0.80126 1.04409 1.46954 1.65741 1.13565 1.02606 1.19421 0.95637 0.92604 0.81120 1.21476 0.97328 1.30375 1.06111 0.95296 1.25751 0.99212 0.94617 0.98956 1.70060 1.29887 1.34698 1.24410 0.85774 0.80345 0.77965 0.79166 1.18831 1.21358 1.17140 1.17769 0.87779 0.86558 0.86141 1.20878 1.14803 1.03704 0.88837 1.20697 1.05161 0.93194 0.82361 1.43660 0.97463 1.00875 1.02973 1.94492 1.52694 1.68410 1.21497 1.94523 1.49682 0.99744 1.94195 1.20833 1.14290 0.93074 0.99795 1.17852 0.87190 0.87293 0.86475 1.42171 1.75301 1.05890 1.13440 1.66773 1.25162 1.08932 1.30439 0.94383 0.94268 0.88992 0.88526 0.88304 0.94526 0.94042 0.92644 0.81649 0.80775 0.75700 0.73926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 10.24 71.98 0.74 -4.36 16 2 C 0.11 3.36 6.01 86.38 0.52 3.88 16 3 N -0.58 -21.91 2.57 -708.33 -1.82 -23.73 16 4 C 0.23 10.31 4.25 85.63 0.36 10.67 16 5 C -0.51 -27.85 9.48 25.60 0.24 -27.61 16 6 H 0.03 1.80 7.67 -2.91 -0.02 1.78 16 7 C 0.01 0.66 5.47 84.66 0.46 1.12 16 8 N -0.95 -57.61 13.96 21.45 0.30 -57.31 16 9 Si 0.94 41.59 27.47 68.60 1.88 43.48 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.25 -10.14 6.54 99.48 0.65 -9.49 16 13 C 0.46 16.91 7.36 133.02 0.98 17.89 16 14 C -0.25 -8.10 8.79 22.52 0.20 -7.90 16 15 C 0.08 2.30 6.89 36.51 0.25 2.55 16 16 N 0.03 0.90 4.45 -46.14 -0.21 0.70 16 17 O -0.15 -4.54 18.54 18.88 0.35 -4.19 16 18 O -0.17 -5.23 18.54 18.89 0.35 -4.88 16 19 C -0.25 -6.86 9.45 22.52 0.21 -6.65 16 20 C 0.46 13.63 7.74 132.99 1.03 14.66 16 21 N -0.82 -17.65 9.07 -55.49 -0.50 -18.15 16 22 N -0.58 -22.09 9.19 -190.68 -1.75 -23.84 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.04 1.53 7.26 -2.39 -0.02 1.51 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.10 2.51 7.89 -2.39 -0.02 2.49 16 27 H 0.10 2.31 5.98 -2.39 -0.01 2.29 16 28 H 0.04 1.68 6.51 -2.38 -0.02 1.66 16 29 H 0.04 1.70 7.32 -2.39 -0.02 1.68 16 30 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.17 4.69 5.65 -2.91 -0.02 4.67 16 32 H 0.17 3.70 7.69 -2.91 -0.02 3.68 16 33 H 0.41 9.07 8.95 -92.70 -0.83 8.24 16 34 H 0.43 5.74 8.82 -92.71 -0.82 4.92 16 Total: -1.00 -67.95 298.55 3.06 -64.89 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.54 Total: 18.79 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.00 Total: 4.25 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -3.98 Total: -122.34 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.70 Total: -9.07 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.88 Total: 43.48 kcal Total: -67.95 3.06 -64.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233445933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.133 kcal (2) G-P(sol) polarization free energy of solvation -67.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds