Wall clock time and date at job start Mon Mar 30 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46910 * 2 1 4 4 H 1.09007 * 109.46848 * 55.00220 * 3 2 1 5 5 C 1.50698 * 109.47236 * 174.99822 * 3 2 1 6 6 H 1.07997 * 120.00326 * 119.99922 * 5 3 2 7 7 C 1.37880 * 120.00163 * 300.00498 * 5 3 2 8 8 N 1.31513 * 119.99917 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00001 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47362 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47119 * 120.00133 * 9 7 5 12 12 H 1.48503 * 109.47352 * 239.99782 * 9 7 5 13 13 N 1.46496 * 109.47303 * 295.00114 * 3 2 1 14 14 C 1.34783 * 120.00260 * 85.00362 * 13 3 2 15 15 O 1.21611 * 119.99543 * 359.97438 * 14 13 3 16 16 C 1.47365 * 120.00067 * 179.97438 * 14 13 3 17 17 C 1.39854 * 120.09307 * 359.97438 * 16 14 13 18 18 C 1.36536 * 120.07821 * 179.72154 * 17 16 14 19 19 C 1.39297 * 120.26894 * 0.25435 * 18 17 16 20 20 N 1.39054 * 119.90677 * 180.02562 * 19 18 17 21 21 C 1.39073 * 120.18390 * 0.02562 * 19 18 17 22 22 C 1.38008 * 119.91948 * 0.02562 * 21 19 18 23 23 F 1.35099 * 120.13447 * 180.02562 * 22 21 19 24 24 H 1.08994 * 109.47265 * 299.99932 * 1 2 3 25 25 H 1.09007 * 109.47136 * 60.00064 * 1 2 3 26 26 H 1.08997 * 109.46790 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47261 * 240.00459 * 2 1 3 28 28 H 1.08993 * 109.47020 * 119.99890 * 2 1 3 29 29 H 0.96999 * 120.00376 * 180.02562 * 8 7 5 30 30 H 0.96999 * 119.99972 * 264.99300 * 13 3 2 31 31 H 1.08002 * 119.96345 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.86408 * 180.27367 * 18 17 16 33 33 H 0.96993 * 119.99979 * 0.02562 * 20 19 18 34 34 H 0.97003 * 119.99768 * 179.97438 * 20 19 18 35 35 H 1.08003 * 120.04391 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8802 1.3811 10 1 6.5987 1.5455 0.1937 11 1 6.3999 1.6158 2.6093 12 1 6.4962 -0.5188 1.4626 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3669 15 8 -0.3417 2.6319 -0.4318 16 6 0.0454 3.3239 -2.6259 17 6 0.9375 3.3629 -3.7023 18 6 0.5740 3.9689 -4.8706 19 6 -0.6831 4.5557 -4.9957 20 7 -1.0456 5.1704 -6.1892 21 6 -1.5767 4.5284 -3.9304 22 6 -1.2169 3.9188 -2.7457 23 9 -2.0818 3.8893 -1.7082 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8292 -0.0604 2.9502 30 1 2.2719 2.1233 -1.9977 31 1 1.9132 2.9089 -3.6110 32 1 1.2640 3.9932 -5.7011 33 1 -0.4236 5.1898 -6.9331 34 1 -1.9209 5.5790 -6.2779 35 1 -2.5507 4.9843 -4.0298 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233868583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:59 Heat of formation + Delta-G solvation = -62.833838 kcal Electronic energy + Delta-G solvation = -20057.034066 eV Core-core repulsion = 16776.030969 eV Total energy + Delta-G solvation = -3281.003097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.55586 -39.65599 -38.32552 -35.01235 -34.49276 -32.32634 -31.05563 -30.50348 -28.90271 -26.78058 -23.47895 -23.01554 -22.40649 -20.39652 -19.28541 -18.05015 -17.41458 -17.36173 -15.94462 -15.43351 -15.36732 -15.19170 -14.95007 -14.53307 -14.22654 -13.99797 -13.25771 -13.02818 -12.80125 -12.63010 -12.25309 -11.92923 -11.46600 -11.33932 -11.19777 -10.91528 -10.80910 -10.49154 -10.26030 -10.10274 -9.55209 -8.99086 -8.92154 -8.87507 -8.44991 -7.86454 -7.61564 -6.07881 -4.17049 1.09951 1.27422 3.26263 3.31764 3.34185 3.36623 3.47591 4.14331 4.21317 4.41680 4.47282 4.68761 4.95971 5.23360 5.28784 5.44591 5.49072 5.86224 6.04603 6.24689 6.30687 6.47619 6.55352 6.69555 6.75511 7.12585 7.15789 7.28980 7.39980 7.45416 7.54270 7.68169 7.80745 7.97043 8.24150 8.74655 8.84021 9.23154 9.50569 10.97549 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027423 B = 0.005009 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.812312 B = 5588.283054 C = 6265.929462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.546 3.454 15 O -0.540 6.540 16 C -0.221 4.221 17 C -0.011 4.011 18 C -0.217 4.217 19 C 0.259 3.741 20 N -0.868 5.868 21 C -0.254 4.254 22 C 0.204 3.796 23 F -0.114 7.114 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.099 0.901 29 H 0.263 0.737 30 H 0.385 0.615 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.401 0.599 34 H 0.400 0.600 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 7.374 -16.725 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.332 3.668 15 O -0.419 6.419 16 C -0.227 4.227 17 C -0.030 4.030 18 C -0.240 4.240 19 C 0.151 3.849 20 N -0.406 5.406 21 C -0.278 4.278 22 C 0.183 3.817 23 F -0.092 7.092 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.219 0.781 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.230 0.770 34 H 0.228 0.772 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.627 7.215 -15.763 18.559 hybrid contribution 1.035 0.151 -0.468 1.145 sum -5.592 7.366 -16.230 18.680 Atomic orbital electron populations 1.21842 0.98313 0.97961 1.01378 1.21928 0.92657 0.99775 1.02190 1.18796 0.94148 0.89193 0.81003 0.93208 1.21271 0.90730 1.38840 1.06268 0.92068 1.24884 0.98531 0.94864 0.95408 1.69909 1.34981 1.37709 1.09310 0.86413 0.84980 0.77714 0.78086 1.19772 1.20926 1.20918 1.46383 1.14336 1.56037 1.18485 1.17815 0.83115 0.79393 0.86495 1.90797 1.51326 1.59976 1.39828 1.20186 0.95376 1.09277 0.97854 1.20749 0.98165 0.93371 0.90755 1.20283 0.96275 1.07504 0.99908 1.17533 0.92266 0.89245 0.85808 1.42387 1.20716 1.64136 1.13323 1.20360 1.02189 1.12196 0.93025 1.17362 0.86537 0.94052 0.83767 1.91585 1.67821 1.93597 1.56197 0.93113 0.94218 0.95936 0.95079 0.88321 0.92656 0.78138 0.84552 0.85317 0.76986 0.77166 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.51 37.16 0.32 -2.91 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.95 2.24 -69.09 -0.15 6.80 16 4 H 0.05 1.49 7.58 -51.92 -0.39 1.10 16 5 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.94 11.29 55.43 0.63 -24.31 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 N -0.70 -15.13 4.97 -56.03 -0.28 -15.41 16 14 C 0.55 11.73 6.32 -12.54 -0.08 11.65 16 15 O -0.54 -13.57 12.46 5.27 0.07 -13.51 16 16 C -0.22 -3.78 5.88 -104.89 -0.62 -4.39 16 17 C -0.01 -0.14 9.48 -39.59 -0.38 -0.52 16 18 C -0.22 -2.30 9.81 -39.80 -0.39 -2.69 16 19 C 0.26 2.65 6.75 -83.88 -0.57 2.08 16 20 N -0.87 -5.40 9.06 32.40 0.29 -5.11 16 21 C -0.25 -3.12 9.86 -39.36 -0.39 -3.51 16 22 C 0.20 3.33 7.28 -38.98 -0.28 3.05 16 23 F -0.11 -2.15 15.54 2.25 0.04 -2.11 16 24 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 25 H 0.04 0.92 5.64 -51.93 -0.29 0.62 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 7.08 6.55 -40.82 -0.27 6.81 16 31 H 0.14 1.58 6.39 -52.49 -0.34 1.25 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.40 1.67 8.83 -40.82 -0.36 1.31 16 34 H 0.40 1.81 8.83 -40.82 -0.36 1.45 16 35 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -32.39 295.86 -6.86 -39.25 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.96 Total: 7.60 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -3.08 Total: -6.52 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.64 Total: -44.83 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.07 Total: -13.51 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.39 -6.86 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233868583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.582 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds