Wall clock time and date at job start Mon Mar 30 2020 05:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46910 * 2 1 4 4 H 1.09007 * 109.46848 * 55.00220 * 3 2 1 5 5 C 1.50698 * 109.47236 * 174.99822 * 3 2 1 6 6 H 1.07997 * 120.00326 * 119.99922 * 5 3 2 7 7 C 1.37880 * 120.00163 * 300.00498 * 5 3 2 8 8 N 1.31513 * 119.99917 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00001 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47362 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47119 * 120.00133 * 9 7 5 12 12 H 1.48503 * 109.47352 * 239.99782 * 9 7 5 13 13 N 1.46496 * 109.47303 * 295.00114 * 3 2 1 14 14 C 1.34783 * 120.00260 * 85.00362 * 13 3 2 15 15 O 1.21611 * 119.99543 * 359.97438 * 14 13 3 16 16 C 1.47365 * 120.00067 * 179.97438 * 14 13 3 17 17 C 1.39854 * 120.09307 * 359.97438 * 16 14 13 18 18 C 1.36536 * 120.07821 * 179.72154 * 17 16 14 19 19 C 1.39297 * 120.26894 * 0.25435 * 18 17 16 20 20 N 1.39054 * 119.90677 * 180.02562 * 19 18 17 21 21 C 1.39073 * 120.18390 * 0.02562 * 19 18 17 22 22 C 1.38008 * 119.91948 * 0.02562 * 21 19 18 23 23 F 1.35099 * 120.13447 * 180.02562 * 22 21 19 24 24 H 1.08994 * 109.47265 * 299.99932 * 1 2 3 25 25 H 1.09007 * 109.47136 * 60.00064 * 1 2 3 26 26 H 1.08997 * 109.46790 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47261 * 240.00459 * 2 1 3 28 28 H 1.08993 * 109.47020 * 119.99890 * 2 1 3 29 29 H 0.96999 * 120.00376 * 180.02562 * 8 7 5 30 30 H 0.96999 * 119.99972 * 264.99300 * 13 3 2 31 31 H 1.08002 * 119.96345 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.86408 * 180.27367 * 18 17 16 33 33 H 0.96993 * 119.99979 * 0.02562 * 20 19 18 34 34 H 0.97003 * 119.99768 * 179.97438 * 20 19 18 35 35 H 1.08003 * 120.04391 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8802 1.3811 10 1 6.5987 1.5455 0.1937 11 1 6.3999 1.6158 2.6093 12 1 6.4962 -0.5188 1.4626 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3669 15 8 -0.3417 2.6319 -0.4318 16 6 0.0454 3.3239 -2.6259 17 6 0.9375 3.3629 -3.7023 18 6 0.5740 3.9689 -4.8706 19 6 -0.6831 4.5557 -4.9957 20 7 -1.0456 5.1704 -6.1892 21 6 -1.5767 4.5284 -3.9304 22 6 -1.2169 3.9188 -2.7457 23 9 -2.0818 3.8893 -1.7082 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8292 -0.0604 2.9502 30 1 2.2719 2.1233 -1.9977 31 1 1.9132 2.9089 -3.6110 32 1 1.2640 3.9932 -5.7011 33 1 -0.4236 5.1898 -6.9331 34 1 -1.9209 5.5790 -6.2779 35 1 -2.5507 4.9843 -4.0298 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233868583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:58 Heat of formation + Delta-G solvation = -86.367378 kcal Electronic energy + Delta-G solvation = -20058.054557 eV Core-core repulsion = 16776.030969 eV Total energy + Delta-G solvation = -3282.023588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.84464 -40.98320 -39.66265 -36.88744 -35.48652 -34.23574 -32.83479 -31.60676 -30.10039 -28.66598 -25.20465 -24.23275 -23.68522 -22.03244 -21.12021 -19.45267 -18.64807 -18.29387 -17.64732 -17.08672 -16.73519 -16.28614 -16.17974 -16.06728 -15.93484 -15.44618 -14.59993 -14.56513 -14.02718 -14.01340 -13.72140 -13.47649 -13.36636 -13.14920 -12.85094 -12.68765 -12.32648 -12.12612 -12.03964 -11.61565 -11.45654 -11.02094 -10.67473 -10.49990 -9.89534 -9.62272 -8.59808 -8.13602 -6.31362 -0.01760 0.30078 1.46274 1.47066 1.59348 2.06224 2.38242 2.67113 2.78234 2.88575 3.15983 3.43374 3.75009 4.03332 4.10916 4.36052 4.49025 4.56974 4.58297 4.75927 4.90835 5.07092 5.13231 5.17914 5.28154 5.33337 5.45494 5.57803 5.65588 5.72181 5.81640 5.96857 6.18392 6.42625 6.76794 6.93111 7.02981 7.35829 7.62827 8.92378 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027423 B = 0.005009 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.812312 B = 5588.283054 C = 6265.929462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.278 3.722 4 H -0.006 1.006 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.258 1.258 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.700 5.700 14 C 0.541 3.459 15 O -0.590 6.590 16 C -0.259 4.259 17 C -0.007 4.007 18 C -0.206 4.206 19 C 0.279 3.721 20 N -0.842 5.842 21 C -0.253 4.253 22 C 0.176 3.824 23 F -0.141 7.141 24 H 0.022 0.978 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.418 0.582 34 H 0.413 0.587 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 8.335 -20.686 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.349 5.349 14 C 0.330 3.670 15 O -0.473 6.473 16 C -0.265 4.265 17 C -0.027 4.027 18 C -0.228 4.228 19 C 0.168 3.832 20 N -0.379 5.379 21 C -0.277 4.277 22 C 0.155 3.845 23 F -0.120 7.120 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.167 0.833 32 H 0.187 0.813 33 H 0.249 0.751 34 H 0.243 0.757 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.443 8.213 -19.826 22.140 hybrid contribution 0.580 -0.033 0.583 0.823 sum -4.863 8.180 -19.243 21.468 Atomic orbital electron populations 1.21671 0.97347 0.98991 1.00025 1.21776 0.93412 0.99202 1.01399 1.18388 0.93860 0.89108 0.81215 0.98782 1.21604 0.91141 1.38866 1.06833 0.90774 1.25811 1.03508 0.94330 0.94941 1.70071 1.37098 1.38455 1.09884 0.85278 0.78862 0.77825 0.78230 1.18174 1.21183 1.20394 1.46097 1.15098 1.56110 1.17617 1.18531 0.82189 0.78577 0.87685 1.90756 1.52597 1.61846 1.42098 1.19878 0.97207 1.12347 0.97074 1.20894 0.97907 0.93419 0.90468 1.20656 0.96821 1.05570 0.99764 1.17613 0.91590 0.87741 0.86259 1.42419 1.21640 1.61782 1.12099 1.20524 1.03587 1.11600 0.91989 1.17798 0.86332 0.95779 0.84596 1.91509 1.68615 1.94059 1.57782 0.95829 0.94228 0.93473 0.93806 0.90849 0.92636 0.76212 0.83283 0.81324 0.75082 0.75680 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.51 71.98 0.61 -5.40 16 2 C -0.12 -6.15 5.45 30.59 0.17 -5.99 16 3 C 0.28 14.94 2.24 44.25 0.10 15.04 16 4 H -0.01 -0.37 7.58 -2.38 -0.02 -0.39 16 5 C -0.55 -29.49 8.73 25.60 0.22 -29.26 16 6 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -53.58 11.29 21.45 0.24 -53.34 16 9 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 13 N -0.70 -31.01 4.97 -449.43 -2.23 -33.25 16 14 C 0.54 24.37 6.32 86.64 0.55 24.92 16 15 O -0.59 -31.89 12.46 -4.06 -0.05 -31.94 16 16 C -0.26 -8.93 5.88 -20.04 -0.12 -9.05 16 17 C -0.01 -0.18 9.48 22.26 0.21 0.04 16 18 C -0.21 -3.45 9.81 22.13 0.22 -3.24 16 19 C 0.28 4.53 6.75 38.45 0.26 4.79 16 20 N -0.84 -5.91 9.06 -51.42 -0.47 -6.38 16 21 C -0.25 -5.67 9.86 22.42 0.22 -5.44 16 22 C 0.18 5.82 7.28 22.66 0.17 5.98 16 23 F -0.14 -5.65 15.54 44.97 0.70 -4.95 16 24 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 25 H 0.04 1.91 5.64 -2.38 -0.01 1.89 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 4.19 5.95 -2.39 -0.01 4.18 16 29 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.40 14.73 6.55 -92.71 -0.61 14.12 16 31 H 0.15 3.11 6.39 -2.91 -0.02 3.09 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.42 0.93 8.83 -92.71 -0.82 0.11 16 34 H 0.41 1.56 8.83 -92.71 -0.82 0.74 16 35 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -76.00 295.86 2.19 -73.82 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -1.09 Total: 17.98 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 3.05 Total: -6.40 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -2.46 Total: -92.96 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.05 Total: -31.94 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.70 Total: -4.95 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -76.00 2.19 -73.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233868583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.551 kcal (2) G-P(sol) polarization free energy of solvation -76.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds