Wall clock time and date at job start Mon Mar 30 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46881 * 2 1 4 4 H 1.08999 * 109.47041 * 304.99459 * 3 2 1 5 5 C 1.50695 * 109.47093 * 184.99737 * 3 2 1 6 6 H 1.08003 * 120.00070 * 239.99915 * 5 3 2 7 7 C 1.37880 * 120.00080 * 59.99556 * 5 3 2 8 8 N 1.31513 * 119.99792 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00001 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47058 * 60.00598 * 9 7 5 11 11 H 1.48501 * 109.47124 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47565 * 300.00456 * 9 7 5 13 13 N 1.46500 * 109.47318 * 64.99503 * 3 2 1 14 14 C 1.34776 * 120.00299 * 275.00109 * 13 3 2 15 15 O 1.21610 * 119.99674 * 0.02562 * 14 13 3 16 16 C 1.47368 * 120.00339 * 179.97438 * 14 13 3 17 17 C 1.39858 * 120.09038 * 359.97438 * 16 14 13 18 18 C 1.36525 * 120.07871 * 180.02562 * 17 16 14 19 19 C 1.39304 * 120.27009 * 359.97438 * 18 17 16 20 20 N 1.39048 * 119.90820 * 180.02562 * 19 18 17 21 21 C 1.39072 * 120.18276 * 359.77340 * 19 18 17 22 22 C 1.38011 * 119.91529 * 0.48345 * 21 19 18 23 23 F 1.35104 * 120.13032 * 179.76674 * 22 21 19 24 24 H 1.08995 * 109.47241 * 300.00037 * 1 2 3 25 25 H 1.08998 * 109.47090 * 60.00850 * 1 2 3 26 26 H 1.09009 * 109.46856 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47681 * 239.99762 * 2 1 3 28 28 H 1.09004 * 109.46776 * 119.99469 * 2 1 3 29 29 H 0.97006 * 119.99800 * 179.97438 * 8 7 5 30 30 H 0.97006 * 120.00087 * 94.99945 * 13 3 2 31 31 H 1.08005 * 119.96150 * 0.02562 * 17 16 14 32 32 H 1.08004 * 119.86528 * 180.02562 * 18 17 16 33 33 H 0.97008 * 120.00197 * 0.02562 * 20 19 18 34 34 H 0.97007 * 120.00132 * 180.02562 * 20 19 18 35 35 H 1.07993 * 120.04205 * 180.27212 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4062 0.3374 -2.1731 9 14 6.0049 0.8813 -1.3816 10 1 6.5975 0.1474 -0.2346 11 1 6.3979 0.2178 -2.6506 12 1 6.4995 2.2816 -1.3819 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3668 15 8 -0.3418 2.6318 0.4317 16 6 0.0448 3.3229 2.6262 17 6 0.9360 3.3602 3.7034 18 6 0.5741 3.9698 4.8701 19 6 -0.6826 4.5578 4.9947 20 7 -1.0432 5.1771 6.1863 21 6 -1.5755 4.5318 3.9288 22 6 -1.2196 3.9130 2.7477 23 9 -2.0854 3.8810 1.7111 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8294 -0.0605 -2.9501 30 1 2.2718 2.1233 1.9978 31 1 1.9118 2.9062 3.6121 32 1 1.2652 3.9969 5.6996 33 1 -0.4198 5.1996 6.9293 34 1 -1.9181 5.5868 6.2747 35 1 -2.5475 4.9922 4.0264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234036873.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:04 Heat of formation + Delta-G solvation = -62.746952 kcal Electronic energy + Delta-G solvation = -20056.989503 eV Core-core repulsion = 16775.990174 eV Total energy + Delta-G solvation = -3280.999329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.55431 -39.65599 -38.32514 -35.01068 -34.49243 -32.32452 -31.05438 -30.50358 -28.90208 -26.77777 -23.47658 -23.01433 -22.40498 -20.39581 -19.28435 -18.04966 -17.41362 -17.36120 -15.93917 -15.43267 -15.36513 -15.19059 -14.94993 -14.53155 -14.22824 -14.00124 -13.25894 -13.02795 -12.80040 -12.62023 -12.25316 -11.92787 -11.46163 -11.33693 -11.18378 -10.94719 -10.78498 -10.49207 -10.27682 -10.09687 -9.55113 -9.00376 -8.92084 -8.87513 -8.44204 -7.86434 -7.61512 -6.07328 -4.16718 1.09983 1.27452 3.28351 3.31805 3.33832 3.34908 3.47567 4.14317 4.21396 4.41916 4.47334 4.68765 4.95973 5.23655 5.28803 5.44619 5.49075 5.86199 6.04611 6.24713 6.30709 6.47639 6.55534 6.69571 6.75629 7.12669 7.15820 7.29050 7.39910 7.45474 7.54358 7.67981 7.80934 7.97208 8.24407 8.74639 8.83947 9.23196 9.50754 10.97989 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.005010 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.931644 B = 5587.485970 C = 6266.525210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.704 5.704 14 C 0.546 3.454 15 O -0.540 6.540 16 C -0.221 4.221 17 C -0.011 4.011 18 C -0.217 4.217 19 C 0.259 3.741 20 N -0.868 5.868 21 C -0.254 4.254 22 C 0.204 3.796 23 F -0.114 7.114 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.099 0.901 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.385 0.615 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.401 0.599 34 H 0.400 0.600 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 7.366 16.696 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.332 3.668 15 O -0.419 6.419 16 C -0.227 4.227 17 C -0.030 4.030 18 C -0.240 4.240 19 C 0.151 3.849 20 N -0.406 5.406 21 C -0.278 4.278 22 C 0.183 3.817 23 F -0.092 7.092 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.230 0.770 34 H 0.228 0.772 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.620 7.203 15.724 18.519 hybrid contribution 1.042 0.161 0.490 1.163 sum -5.578 7.364 16.214 18.661 Atomic orbital electron populations 1.21843 0.98316 0.97960 1.01376 1.21930 0.92650 0.99781 1.02189 1.18784 0.94105 0.89183 0.80995 0.93216 1.21195 0.90725 1.39032 1.06300 0.92179 1.24879 0.98517 0.94848 0.95393 1.69892 1.35163 1.37564 1.09299 0.86525 0.84970 0.78267 0.77410 1.20197 1.21169 1.20220 1.46384 1.14346 1.56027 1.18484 1.17813 0.83118 0.79384 0.86503 1.90797 1.51333 1.59957 1.39842 1.20186 0.95293 1.09405 0.97810 1.20747 0.98182 0.93371 0.90742 1.20283 0.96271 1.07447 0.99968 1.17534 0.92279 0.89231 0.85808 1.42389 1.20711 1.63925 1.13536 1.20359 1.02302 1.11976 0.93136 1.17361 0.86502 0.94050 0.83803 1.91587 1.67757 1.93603 1.56256 0.94212 0.93120 0.95938 0.88321 0.95083 0.92541 0.78142 0.84553 0.85317 0.76984 0.77165 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.51 37.16 0.32 -2.91 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.97 2.24 -69.08 -0.15 6.82 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.95 11.29 55.43 0.63 -24.32 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.70 -15.13 4.97 -56.03 -0.28 -15.41 16 14 C 0.55 11.73 6.33 -12.55 -0.08 11.65 16 15 O -0.54 -13.58 12.46 5.27 0.07 -13.51 16 16 C -0.22 -3.78 5.88 -104.89 -0.62 -4.39 16 17 C -0.01 -0.14 9.48 -39.59 -0.38 -0.52 16 18 C -0.22 -2.30 9.81 -39.80 -0.39 -2.69 16 19 C 0.26 2.65 6.75 -83.88 -0.57 2.08 16 20 N -0.87 -5.40 9.05 32.40 0.29 -5.11 16 21 C -0.25 -3.12 9.86 -39.36 -0.39 -3.51 16 22 C 0.20 3.34 7.28 -38.98 -0.28 3.05 16 23 F -0.11 -2.15 15.54 2.25 0.04 -2.12 16 24 H 0.04 0.92 5.64 -51.93 -0.29 0.63 16 25 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 26 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.39 7.08 6.55 -40.82 -0.27 6.81 16 31 H 0.14 1.58 6.39 -52.48 -0.34 1.25 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.40 1.67 8.83 -40.82 -0.36 1.31 16 34 H 0.40 1.81 8.83 -40.82 -0.36 1.45 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -32.36 295.86 -6.86 -39.22 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.96 Total: 7.66 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -3.08 Total: -6.51 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.64 Total: -44.84 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.51 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.36 -6.86 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234036873.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.528 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds