Wall clock time and date at job start Mon Mar 30 2020 05:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46881 * 2 1 4 4 H 1.08999 * 109.47041 * 304.99459 * 3 2 1 5 5 C 1.50695 * 109.47093 * 184.99737 * 3 2 1 6 6 H 1.08003 * 120.00070 * 239.99915 * 5 3 2 7 7 C 1.37880 * 120.00080 * 59.99556 * 5 3 2 8 8 N 1.31513 * 119.99792 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00001 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47058 * 60.00598 * 9 7 5 11 11 H 1.48501 * 109.47124 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47565 * 300.00456 * 9 7 5 13 13 N 1.46500 * 109.47318 * 64.99503 * 3 2 1 14 14 C 1.34776 * 120.00299 * 275.00109 * 13 3 2 15 15 O 1.21610 * 119.99674 * 0.02562 * 14 13 3 16 16 C 1.47368 * 120.00339 * 179.97438 * 14 13 3 17 17 C 1.39858 * 120.09038 * 359.97438 * 16 14 13 18 18 C 1.36525 * 120.07871 * 180.02562 * 17 16 14 19 19 C 1.39304 * 120.27009 * 359.97438 * 18 17 16 20 20 N 1.39048 * 119.90820 * 180.02562 * 19 18 17 21 21 C 1.39072 * 120.18276 * 359.77340 * 19 18 17 22 22 C 1.38011 * 119.91529 * 0.48345 * 21 19 18 23 23 F 1.35104 * 120.13032 * 179.76674 * 22 21 19 24 24 H 1.08995 * 109.47241 * 300.00037 * 1 2 3 25 25 H 1.08998 * 109.47090 * 60.00850 * 1 2 3 26 26 H 1.09009 * 109.46856 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47681 * 239.99762 * 2 1 3 28 28 H 1.09004 * 109.46776 * 119.99469 * 2 1 3 29 29 H 0.97006 * 119.99800 * 179.97438 * 8 7 5 30 30 H 0.97006 * 120.00087 * 94.99945 * 13 3 2 31 31 H 1.08005 * 119.96150 * 0.02562 * 17 16 14 32 32 H 1.08004 * 119.86528 * 180.02562 * 18 17 16 33 33 H 0.97008 * 120.00197 * 0.02562 * 20 19 18 34 34 H 0.97007 * 120.00132 * 180.02562 * 20 19 18 35 35 H 1.07993 * 120.04205 * 180.27212 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4062 0.3374 -2.1731 9 14 6.0049 0.8813 -1.3816 10 1 6.5975 0.1474 -0.2346 11 1 6.3979 0.2178 -2.6506 12 1 6.4995 2.2816 -1.3819 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3668 15 8 -0.3418 2.6318 0.4317 16 6 0.0448 3.3229 2.6262 17 6 0.9360 3.3602 3.7034 18 6 0.5741 3.9698 4.8701 19 6 -0.6826 4.5578 4.9947 20 7 -1.0432 5.1771 6.1863 21 6 -1.5755 4.5318 3.9288 22 6 -1.2196 3.9130 2.7477 23 9 -2.0854 3.8810 1.7111 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8294 -0.0605 -2.9501 30 1 2.2718 2.1233 1.9978 31 1 1.9118 2.9062 3.6121 32 1 1.2652 3.9969 5.6996 33 1 -0.4198 5.1996 6.9293 34 1 -1.9181 5.5868 6.2747 35 1 -2.5475 4.9922 4.0264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234036873.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:01 Heat of formation + Delta-G solvation = -86.256012 kcal Electronic energy + Delta-G solvation = -20058.008932 eV Core-core repulsion = 16775.990174 eV Total energy + Delta-G solvation = -3282.018759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -49.84368 -40.98350 -39.66282 -36.88596 -35.48667 -34.23402 -32.83417 -31.60738 -30.09991 -28.66301 -25.20077 -24.23224 -23.68519 -22.03195 -21.12013 -19.45126 -18.64681 -18.29377 -17.64021 -17.08472 -16.73660 -16.28937 -16.17762 -16.06789 -15.93570 -15.44873 -14.59322 -14.56004 -14.02806 -14.01326 -13.72174 -13.46972 -13.36574 -13.13563 -12.88555 -12.63128 -12.32635 -12.16264 -12.04518 -11.61175 -11.45528 -11.04198 -10.66929 -10.48642 -9.89580 -9.62307 -8.59809 -8.13052 -6.31063 -0.01766 0.30078 1.46809 1.49440 1.57068 2.06233 2.38468 2.67242 2.78198 2.88574 3.16266 3.43353 3.74994 4.03332 4.10898 4.36037 4.48995 4.57058 4.58279 4.75977 4.90808 5.07098 5.13201 5.17910 5.28167 5.33333 5.45505 5.57737 5.65404 5.72162 5.81732 5.97062 6.18479 6.42602 6.76508 6.93013 7.03050 7.35996 7.62877 8.92470 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.005010 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.931644 B = 5587.485970 C = 6266.525210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.278 3.722 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.262 1.262 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.541 3.459 15 O -0.590 6.590 16 C -0.259 4.259 17 C -0.007 4.007 18 C -0.206 4.206 19 C 0.279 3.721 20 N -0.842 5.842 21 C -0.253 4.253 22 C 0.176 3.824 23 F -0.141 7.141 24 H 0.039 0.961 25 H 0.022 0.978 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.265 0.735 30 H 0.402 0.598 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.418 0.582 34 H 0.413 0.587 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 8.318 20.655 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.186 1.186 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.349 5.349 14 C 0.330 3.670 15 O -0.473 6.473 16 C -0.265 4.265 17 C -0.027 4.027 18 C -0.228 4.228 19 C 0.168 3.832 20 N -0.379 5.379 21 C -0.277 4.277 22 C 0.155 3.845 23 F -0.120 7.120 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.167 0.833 32 H 0.187 0.813 33 H 0.249 0.751 34 H 0.243 0.757 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.422 8.192 19.787 22.091 hybrid contribution 0.583 -0.017 -0.558 0.807 sum -4.839 8.174 19.228 21.447 Atomic orbital electron populations 1.21672 0.97350 0.98990 1.00020 1.21777 0.93405 0.99207 1.01396 1.18378 0.93831 0.89098 0.81205 0.98801 1.21545 0.91150 1.39059 1.06900 0.90787 1.25810 1.03517 0.94299 0.94916 1.70062 1.37238 1.38332 1.09843 0.85383 0.78814 0.78437 0.77590 1.18637 1.21310 1.19673 1.46098 1.15109 1.56097 1.17618 1.18530 0.82194 0.78566 0.87698 1.90756 1.52604 1.61829 1.42112 1.19877 0.97116 1.12487 0.97030 1.20892 0.97926 0.93422 0.90450 1.20656 0.96821 1.05509 0.99822 1.17614 0.91596 0.87741 0.86251 1.42422 1.21637 1.61571 1.12307 1.20523 1.03700 1.11370 0.92115 1.17798 0.86291 0.95782 0.84633 1.91510 1.68552 1.94065 1.57840 0.94226 0.95837 0.93472 0.90837 0.93824 0.92624 0.76210 0.83276 0.81321 0.75077 0.75679 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.51 71.98 0.61 -5.40 16 2 C -0.12 -6.15 5.45 30.60 0.17 -5.99 16 3 C 0.28 14.98 2.24 44.24 0.10 15.08 16 4 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 5 C -0.55 -29.61 8.73 25.60 0.22 -29.39 16 6 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 7 C 0.01 0.80 5.29 84.66 0.45 1.24 16 8 N -0.92 -53.60 11.29 21.45 0.24 -53.36 16 9 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 N -0.70 -31.03 4.97 -449.44 -2.23 -33.26 16 14 C 0.54 24.38 6.33 86.65 0.55 24.93 16 15 O -0.59 -31.91 12.46 -4.06 -0.05 -31.96 16 16 C -0.26 -8.94 5.88 -20.04 -0.12 -9.06 16 17 C -0.01 -0.18 9.48 22.26 0.21 0.04 16 18 C -0.21 -3.45 9.81 22.13 0.22 -3.24 16 19 C 0.28 4.53 6.75 38.45 0.26 4.79 16 20 N -0.84 -5.91 9.05 -51.42 -0.47 -6.38 16 21 C -0.25 -5.67 9.86 22.42 0.22 -5.45 16 22 C 0.18 5.82 7.28 22.66 0.16 5.99 16 23 F -0.14 -5.65 15.54 44.97 0.70 -4.95 16 24 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 25 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 26 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.07 4.20 5.95 -2.39 -0.01 4.18 16 28 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 30 H 0.40 14.73 6.55 -92.70 -0.61 14.12 16 31 H 0.15 3.11 6.39 -2.91 -0.02 3.09 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.42 0.93 8.83 -92.70 -0.82 0.11 16 34 H 0.41 1.56 8.83 -92.70 -0.82 0.74 16 35 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -75.97 295.86 2.19 -73.79 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -1.09 Total: 18.17 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 3.05 Total: -6.45 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -2.46 Total: -93.00 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.05 Total: -31.96 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.70 Total: -4.95 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -75.97 2.19 -73.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234036873.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.471 kcal (2) G-P(sol) polarization free energy of solvation -75.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds