Wall clock time and date at job start Mon Mar 30 2020 04:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00009 * 2 1 4 4 C 1.50697 * 109.47138 * 269.99941 * 3 2 1 5 5 H 1.08007 * 119.99986 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00070 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00464 * 359.97438 * 6 4 3 8 8 Si 1.86808 * 119.99894 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47193 * 60.00141 * 8 6 4 10 10 H 1.48508 * 109.46762 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47177 * 299.99850 * 8 6 4 12 12 C 1.39668 * 120.00097 * 179.97438 * 2 1 3 13 13 C 1.38933 * 120.07536 * 179.97438 * 12 2 1 14 14 C 1.38086 * 119.92470 * 180.02562 * 13 12 2 15 15 C 1.38302 * 120.07691 * 359.72583 * 14 13 12 16 16 N 1.48007 * 119.92937 * 180.27301 * 15 14 13 17 17 O 1.21803 * 119.99599 * 0.27861 * 16 15 14 18 18 O 1.21796 * 119.99994 * 180.27327 * 16 15 14 19 19 C 1.38266 * 120.14736 * 0.54894 * 15 14 13 20 20 C 1.50696 * 119.96153 * 179.72138 * 19 15 14 21 21 O 1.42903 * 109.47131 * 179.72491 * 20 19 15 22 22 C 1.38129 * 120.07294 * 359.45247 * 19 15 14 23 23 H 1.08996 * 109.47102 * 270.00210 * 1 2 3 24 24 H 1.09002 * 109.47176 * 30.00598 * 1 2 3 25 25 H 1.09002 * 109.47178 * 150.00255 * 1 2 3 26 26 H 1.09006 * 109.46822 * 29.99479 * 3 2 1 27 27 H 1.08997 * 109.47301 * 149.99802 * 3 2 1 28 28 H 0.96996 * 119.99925 * 180.02562 * 7 6 4 29 29 H 1.08001 * 120.03952 * 0.04632 * 13 12 2 30 30 H 1.08005 * 119.95585 * 180.02562 * 14 13 12 31 31 H 1.09008 * 109.47144 * 59.73262 * 20 19 15 32 32 H 1.08999 * 109.47358 * 299.72851 * 20 19 15 33 33 H 0.96700 * 114.00311 * 300.00591 * 21 20 19 34 34 H 1.08004 * 120.03576 * 180.24565 * 22 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5525 3.6187 -0.6732 8 14 3.4380 3.4168 -3.4340 9 1 2.1407 3.5935 -4.1347 10 1 4.1793 4.7036 -3.4339 11 1 4.2414 2.3821 -4.1333 12 6 2.1634 -1.2096 0.0005 13 6 3.5527 -1.2114 0.0000 14 6 4.2400 -2.4090 0.0000 15 6 3.5470 -3.6059 0.0063 16 7 4.2870 -4.8876 0.0124 17 8 5.5050 -4.8876 0.0170 18 8 3.6780 -5.9424 0.0129 19 6 2.1643 -3.6077 0.0011 20 6 1.4135 -4.9143 0.0016 21 8 0.0080 -4.6560 0.0021 22 6 1.4706 -2.4133 0.0011 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0284 0.5138 27 1 3.1499 1.1385 0.5138 28 1 4.0286 4.4449 -0.8505 29 1 4.0945 -0.2771 -0.0001 30 1 5.3200 -2.4110 0.0000 31 1 1.6782 -5.4852 0.8917 32 1 1.6776 -5.4855 -0.8884 33 1 -0.2987 -4.1503 0.7672 34 1 0.3905 -2.4154 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234265869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:28 Heat of formation + Delta-G solvation = -41.773303 kcal Electronic energy + Delta-G solvation = -20064.953641 eV Core-core repulsion = 16772.491008 eV Total energy + Delta-G solvation = -3292.462633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.13749 -40.95516 -38.42112 -37.53000 -37.05311 -34.88689 -32.68976 -31.98764 -29.98198 -28.01846 -27.54869 -25.69623 -24.46364 -22.99275 -21.85440 -20.05336 -19.58998 -18.73175 -18.57186 -18.28381 -17.73363 -17.07859 -16.44672 -15.87804 -15.71884 -15.33740 -15.27147 -14.59625 -14.33386 -14.09541 -13.79256 -13.42896 -13.19322 -12.94805 -12.75290 -12.60853 -12.48284 -12.33586 -12.15223 -12.06994 -11.94444 -11.86416 -11.31613 -11.05366 -10.68688 -10.10847 -8.64415 -8.18594 -6.44125 -0.92829 0.11308 0.57568 0.63108 1.37147 1.39294 1.46076 2.12967 2.36484 2.45920 3.02163 3.31126 3.35862 3.61972 3.96999 4.02997 4.21186 4.29604 4.42898 4.48540 4.58562 4.66093 4.77147 4.87973 4.96377 5.06310 5.10612 5.18135 5.30324 5.56795 5.61322 5.94361 6.13520 6.43805 6.69497 6.69748 6.77924 7.27875 8.76184 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.005349 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.121488 B = 5233.356371 C = 5978.209240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.592 5.592 3 C 0.253 3.747 4 C -0.549 4.549 5 H 0.054 0.946 6 C 0.022 3.978 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.277 3.723 13 C -0.205 4.205 14 C -0.004 4.004 15 C -0.139 4.139 16 N 0.054 4.946 17 O -0.230 6.230 18 O -0.181 6.181 19 C -0.008 4.008 20 C 0.125 3.875 21 O -0.567 6.567 22 C -0.203 4.203 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.269 0.731 29 H 0.134 0.866 30 H 0.151 0.849 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.394 0.606 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 -10.374 3.199 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.292 5.292 3 C 0.132 3.868 4 C -0.587 4.587 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.162 3.838 13 C -0.228 4.228 14 C -0.025 4.025 15 C -0.228 4.228 16 N 0.559 4.441 17 O -0.430 6.430 18 O -0.394 6.394 19 C -0.011 4.011 20 C 0.048 3.952 21 O -0.375 6.375 22 C -0.226 4.226 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.169 0.831 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.244 0.756 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.958 -9.686 2.700 12.228 hybrid contribution 0.961 0.882 -0.387 1.361 sum -5.997 -8.804 2.313 10.901 Atomic orbital electron populations 1.21982 0.77666 1.03903 1.02708 1.47480 1.06965 1.03716 1.71021 1.19113 0.91920 0.79698 0.96051 1.21668 1.37130 1.06827 0.93093 0.92806 1.25644 0.94974 0.96318 1.00961 1.69988 1.38498 1.14747 1.32699 0.85652 0.78567 0.77563 0.80202 1.19397 1.20667 1.20079 1.18459 0.91587 0.87015 0.86710 1.20821 0.93217 0.98054 1.10708 1.20687 1.01453 0.89050 0.91262 1.20531 0.91871 0.82468 1.27920 1.43628 1.00926 1.03053 0.96513 1.94498 0.96541 1.94568 1.57385 1.94389 1.69475 1.21283 1.54205 1.20459 0.90307 0.98777 0.91603 1.21472 0.79473 0.89872 1.04426 1.86556 1.21609 1.78040 1.51301 1.20565 1.01733 0.87797 1.12542 0.90761 0.91337 0.89272 0.95547 0.95701 0.92213 0.84807 0.83125 0.89315 0.86924 0.75589 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.01 10.19 127.77 1.30 3.31 16 2 N -0.59 -20.47 2.99 -726.56 -2.17 -22.64 16 3 C 0.25 11.18 4.91 85.63 0.42 11.60 16 4 C -0.55 -27.19 9.39 25.60 0.24 -26.95 16 5 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 6 C 0.02 1.11 5.46 84.65 0.46 1.57 16 7 N -0.92 -49.51 13.29 21.45 0.28 -49.22 16 8 Si 0.95 40.86 29.54 68.60 2.03 42.89 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 C 0.28 9.00 6.55 38.21 0.25 9.25 16 13 C -0.20 -7.14 9.21 22.40 0.21 -6.93 16 14 C 0.00 -0.13 9.55 22.25 0.21 0.09 16 15 C -0.14 -4.34 6.85 36.40 0.25 -4.09 16 16 N 0.05 1.79 4.45 -46.42 -0.21 1.59 16 17 O -0.23 -8.21 18.44 18.88 0.35 -7.87 16 18 O -0.18 -5.65 15.40 18.89 0.29 -5.36 16 19 C -0.01 -0.22 5.87 -19.89 -0.12 -0.33 16 20 C 0.13 2.77 5.68 71.23 0.40 3.18 16 21 O -0.57 -10.86 12.69 -148.98 -1.89 -12.75 16 22 C -0.20 -5.28 8.37 22.40 0.19 -5.09 16 23 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 25 H 0.09 1.80 6.20 -2.39 -0.01 1.79 16 26 H 0.03 1.24 8.07 -2.38 -0.02 1.22 16 27 H 0.03 1.18 6.20 -2.39 -0.01 1.17 16 28 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.13 5.23 6.14 -2.91 -0.02 5.21 16 30 H 0.15 4.53 7.60 -2.91 -0.02 4.50 16 31 H 0.09 1.83 7.28 -2.38 -0.02 1.81 16 32 H 0.11 2.67 7.32 -2.39 -0.02 2.65 16 33 H 0.39 4.37 8.12 -74.06 -0.60 3.77 16 34 H 0.17 3.39 4.68 -2.91 -0.01 3.38 16 Total: -1.00 -58.86 294.10 3.05 -55.81 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.55 Total: 11.94 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 3.82 Total: -14.39 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -2.09 Total: -70.28 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -1.25 Total: -25.97 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -58.86 3.05 -55.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234265869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.037 kcal (2) G-P(sol) polarization free energy of solvation -58.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds