Wall clock time and date at job start Mon Mar 30 2020 05:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38162 * 119.90263 * 2 1 4 4 C 1.39023 * 120.26429 * 179.76121 * 3 2 1 5 5 N 1.39851 * 119.96599 * 180.27624 * 4 3 2 6 6 C 1.38558 * 120.06578 * 0.51937 * 4 3 2 7 7 C 1.39564 * 119.79660 * 359.73564 * 6 4 3 8 8 C 1.47708 * 120.12626 * 180.02562 * 7 6 4 9 9 O 1.21574 * 119.99954 * 131.03181 * 8 7 6 10 10 N 1.34770 * 120.00246 * 311.02303 * 8 7 6 11 11 C 1.46504 * 120.00092 * 4.41331 * 10 8 7 12 12 C 1.46500 * 120.00334 * 184.41310 * 10 8 7 13 13 C 1.50703 * 109.47302 * 89.99991 * 12 10 8 14 14 H 1.08000 * 119.99887 * 0.02562 * 13 12 10 15 15 C 1.37875 * 120.00137 * 180.02562 * 13 12 10 16 16 N 1.31510 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99923 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46848 * 60.00027 * 17 15 13 19 19 H 1.48502 * 109.47052 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47086 * 300.00034 * 17 15 13 21 21 C 1.38289 * 119.89488 * 180.27658 * 2 1 3 22 22 F 1.35095 * 120.03411 * 0.02562 * 21 2 1 23 23 H 1.08999 * 109.47458 * 269.72741 * 1 2 3 24 24 H 1.08994 * 109.47328 * 149.72009 * 1 2 3 25 25 H 1.09004 * 109.46636 * 29.72223 * 1 2 3 26 26 H 1.07995 * 119.86915 * 0.02562 * 3 2 1 27 27 H 0.97006 * 119.99898 * 180.23406 * 5 4 3 28 28 H 0.96996 * 120.00026 * 0.23845 * 5 4 3 29 29 H 1.08000 * 120.10057 * 179.72074 * 6 4 3 30 30 H 1.08999 * 109.46712 * 93.00568 * 11 10 8 31 31 H 1.08998 * 109.47362 * 213.00471 * 11 10 8 32 32 H 1.08995 * 109.46793 * 333.00835 * 11 10 8 33 33 H 1.08998 * 109.47630 * 210.00271 * 12 10 8 34 34 H 1.09003 * 109.46643 * 330.00229 * 12 10 8 35 35 H 0.97001 * 120.00479 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1977 0.0000 4 6 3.5859 1.2065 0.0050 5 7 4.2768 2.4224 0.0108 6 6 4.2877 0.0118 -0.0008 7 6 3.5946 -1.1996 -0.0062 8 6 4.3354 -2.4775 -0.0119 9 8 4.0423 -3.3536 0.7785 10 7 5.3361 -2.6725 -0.8933 11 6 5.7535 -1.5837 -1.7803 12 6 6.0065 -3.9731 -0.9646 13 6 5.2953 -4.8509 -1.9620 14 1 4.4306 -4.4772 -2.4903 15 6 5.7484 -6.1311 -2.2001 16 7 6.8010 -6.5865 -1.5565 17 14 4.8672 -7.2189 -3.4369 18 1 4.8974 -6.5731 -4.7739 19 1 5.5468 -8.5373 -3.5091 20 1 3.4575 -7.4106 -3.0115 21 6 2.1962 -1.1989 -0.0058 22 9 1.5193 -2.3680 -0.0120 23 1 -0.3634 -0.0049 1.0276 24 1 -0.3633 -0.8874 -0.5181 25 1 -0.3633 0.8925 -0.5095 26 1 1.6521 2.1308 0.0004 27 1 5.2468 2.4291 0.0109 28 1 3.7860 3.2590 0.0148 29 1 5.3677 0.0179 -0.0015 30 1 6.5741 -1.0340 -1.3193 31 1 6.0834 -1.9975 -2.7331 32 1 4.9136 -0.9096 -1.9481 33 1 7.0410 -3.8321 -1.2775 34 1 5.9851 -4.4471 0.0168 35 1 7.1201 -7.4870 -1.7242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234293903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:04 Heat of formation + Delta-G solvation = -53.547732 kcal Electronic energy + Delta-G solvation = -20156.006378 eV Core-core repulsion = 16875.405957 eV Total energy + Delta-G solvation = -3280.600421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -48.40033 -39.81104 -38.26007 -34.87385 -34.61956 -32.95396 -32.11596 -28.75028 -27.82310 -26.82182 -25.92458 -24.03313 -22.10435 -21.39586 -18.88710 -17.50605 -17.19706 -16.70582 -16.46796 -15.73860 -15.46581 -15.20085 -14.91545 -14.22757 -14.15248 -13.71304 -13.42254 -12.98768 -12.92564 -12.66803 -12.65743 -12.19290 -12.08537 -11.98222 -11.75740 -11.17323 -11.10124 -10.87175 -10.55701 -10.16784 -10.12530 -9.62552 -9.07443 -8.75548 -8.39750 -7.66041 -7.48561 -6.01158 -4.05908 1.03381 1.38544 3.28461 3.35723 3.39554 3.44071 3.64142 3.69173 4.06217 4.46628 4.52162 4.65997 4.85458 5.07034 5.24907 5.28998 5.33937 5.53894 5.62283 5.73892 5.81280 5.92142 5.94782 6.06118 6.23138 6.25198 6.30606 6.77190 7.06058 7.29918 7.45692 7.54120 7.57620 7.95133 8.25660 8.37599 8.90357 9.06337 9.59004 11.06974 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024826 B = 0.005524 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.600090 B = 5067.929364 C = 5695.872463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.080 4.080 3 C -0.161 4.161 4 C 0.201 3.799 5 N -0.878 5.878 6 C -0.148 4.148 7 C -0.095 4.095 8 C 0.547 3.453 9 O -0.525 6.525 10 N -0.592 5.592 11 C 0.079 3.921 12 C 0.245 3.755 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.086 3.914 22 F -0.127 7.127 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.399 0.601 28 H 0.397 0.603 29 H 0.136 0.864 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 20.366 1.133 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 C -0.184 4.184 4 C 0.097 3.903 5 N -0.418 5.418 6 C -0.171 4.171 7 C -0.100 4.100 8 C 0.332 3.668 9 O -0.402 6.402 10 N -0.323 5.323 11 C -0.065 4.065 12 C 0.126 3.874 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.064 3.936 22 F -0.105 7.105 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.228 0.772 28 H 0.226 0.774 29 H 0.154 0.846 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.538 19.608 1.555 20.728 hybrid contribution -0.233 -0.460 -0.776 0.932 sum -6.770 19.148 0.779 20.325 Atomic orbital electron populations 1.20724 0.90049 1.03300 1.02860 1.19563 0.96715 0.91072 1.00806 1.20316 0.91784 0.97356 1.08952 1.17560 0.91183 0.86381 0.95157 1.42385 1.08966 1.04599 1.85881 1.20647 1.00015 0.89292 1.07180 1.20059 0.92490 0.95134 1.02333 1.17966 0.80793 0.85839 0.82164 1.90788 1.66151 1.43937 1.39351 1.48064 1.34318 1.14907 1.35050 1.21837 0.99214 0.90330 0.95121 1.19345 0.91948 0.77318 0.98800 1.21404 1.13714 0.98448 1.23125 0.92444 1.24921 0.95070 0.97585 0.96415 1.69921 1.23992 1.17666 1.41830 0.86548 0.80012 0.79501 0.81330 1.20237 1.21142 1.20083 1.17229 0.88371 0.81459 1.06535 1.91522 1.79461 1.45716 1.93805 0.90696 0.90900 0.91083 0.85296 0.77248 0.77449 0.84616 0.93684 0.90867 0.91741 0.94724 0.93557 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.83 36.00 0.35 -0.82 16 2 C -0.08 -1.06 5.88 -104.63 -0.62 -1.68 16 3 C -0.16 -1.75 9.53 -39.32 -0.37 -2.13 16 4 C 0.20 2.22 6.75 -83.79 -0.57 1.65 16 5 N -0.88 -6.24 9.10 32.40 0.29 -5.95 16 6 C -0.15 -2.05 7.45 -38.97 -0.29 -2.34 16 7 C -0.10 -1.74 4.90 -104.93 -0.51 -2.25 16 8 C 0.55 12.66 7.00 -12.39 -0.09 12.58 16 9 O -0.53 -14.54 16.20 5.30 0.09 -14.45 16 10 N -0.59 -13.35 2.86 -184.13 -0.53 -13.88 16 11 C 0.08 1.32 9.09 59.85 0.54 1.87 16 12 C 0.24 6.63 5.21 -5.19 -0.03 6.61 16 13 C -0.53 -15.49 9.39 -34.44 -0.32 -15.82 16 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 17 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 21 C 0.09 1.52 7.19 -38.96 -0.28 1.24 16 22 F -0.13 -2.59 15.70 2.25 0.04 -2.55 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.82 7.63 -51.93 -0.40 0.42 16 25 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 26 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.40 2.30 8.84 -40.82 -0.36 1.94 16 28 H 0.40 1.94 8.84 -40.82 -0.36 1.58 16 29 H 0.14 1.68 6.55 -52.49 -0.34 1.34 16 30 H 0.04 0.62 7.55 -51.93 -0.39 0.23 16 31 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 32 H 0.06 0.96 5.67 -51.93 -0.29 0.67 16 33 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.05 1.41 7.36 -51.93 -0.38 1.02 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -35.65 304.69 -6.26 -41.91 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.18 Total: -1.35 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.28 Total: 0.63 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.51 Total: -46.17 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.09 Total: -14.45 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.65 -6.26 -41.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234293903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.642 kcal (2) G-P(sol) polarization free energy of solvation -35.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds