Wall clock time and date at job start Mon Mar 30 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38162 * 119.90263 * 2 1 4 4 C 1.39023 * 120.26429 * 179.76121 * 3 2 1 5 5 N 1.39851 * 119.96599 * 180.27624 * 4 3 2 6 6 C 1.38558 * 120.06578 * 0.51937 * 4 3 2 7 7 C 1.39564 * 119.79660 * 359.73564 * 6 4 3 8 8 C 1.47708 * 120.12626 * 180.02562 * 7 6 4 9 9 O 1.21574 * 119.99954 * 131.03181 * 8 7 6 10 10 N 1.34770 * 120.00246 * 311.02303 * 8 7 6 11 11 C 1.46504 * 120.00092 * 4.41331 * 10 8 7 12 12 C 1.46500 * 120.00334 * 184.41310 * 10 8 7 13 13 C 1.50703 * 109.47302 * 89.99991 * 12 10 8 14 14 H 1.08000 * 119.99887 * 0.02562 * 13 12 10 15 15 C 1.37875 * 120.00137 * 180.02562 * 13 12 10 16 16 N 1.31510 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99923 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46848 * 60.00027 * 17 15 13 19 19 H 1.48502 * 109.47052 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47086 * 300.00034 * 17 15 13 21 21 C 1.38289 * 119.89488 * 180.27658 * 2 1 3 22 22 F 1.35095 * 120.03411 * 0.02562 * 21 2 1 23 23 H 1.08999 * 109.47458 * 269.72741 * 1 2 3 24 24 H 1.08994 * 109.47328 * 149.72009 * 1 2 3 25 25 H 1.09004 * 109.46636 * 29.72223 * 1 2 3 26 26 H 1.07995 * 119.86915 * 0.02562 * 3 2 1 27 27 H 0.97006 * 119.99898 * 180.23406 * 5 4 3 28 28 H 0.96996 * 120.00026 * 0.23845 * 5 4 3 29 29 H 1.08000 * 120.10057 * 179.72074 * 6 4 3 30 30 H 1.08999 * 109.46712 * 93.00568 * 11 10 8 31 31 H 1.08998 * 109.47362 * 213.00471 * 11 10 8 32 32 H 1.08995 * 109.46793 * 333.00835 * 11 10 8 33 33 H 1.08998 * 109.47630 * 210.00271 * 12 10 8 34 34 H 1.09003 * 109.46643 * 330.00229 * 12 10 8 35 35 H 0.97001 * 120.00479 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1977 0.0000 4 6 3.5859 1.2065 0.0050 5 7 4.2768 2.4224 0.0108 6 6 4.2877 0.0118 -0.0008 7 6 3.5946 -1.1996 -0.0062 8 6 4.3354 -2.4775 -0.0119 9 8 4.0423 -3.3536 0.7785 10 7 5.3361 -2.6725 -0.8933 11 6 5.7535 -1.5837 -1.7803 12 6 6.0065 -3.9731 -0.9646 13 6 5.2953 -4.8509 -1.9620 14 1 4.4306 -4.4772 -2.4903 15 6 5.7484 -6.1311 -2.2001 16 7 6.8010 -6.5865 -1.5565 17 14 4.8672 -7.2189 -3.4369 18 1 4.8974 -6.5731 -4.7739 19 1 5.5468 -8.5373 -3.5091 20 1 3.4575 -7.4106 -3.0115 21 6 2.1962 -1.1989 -0.0058 22 9 1.5193 -2.3680 -0.0120 23 1 -0.3634 -0.0049 1.0276 24 1 -0.3633 -0.8874 -0.5181 25 1 -0.3633 0.8925 -0.5095 26 1 1.6521 2.1308 0.0004 27 1 5.2468 2.4291 0.0109 28 1 3.7860 3.2590 0.0148 29 1 5.3677 0.0179 -0.0015 30 1 6.5741 -1.0340 -1.3193 31 1 6.0834 -1.9975 -2.7331 32 1 4.9136 -0.9096 -1.9481 33 1 7.0410 -3.8321 -1.2775 34 1 5.9851 -4.4471 0.0168 35 1 7.1201 -7.4870 -1.7242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234293903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:03 Heat of formation + Delta-G solvation = -79.793853 kcal Electronic energy + Delta-G solvation = -20157.144495 eV Core-core repulsion = 16875.405957 eV Total energy + Delta-G solvation = -3281.738538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.76970 -41.19708 -39.67521 -36.71844 -35.52797 -34.89341 -33.53609 -30.03653 -29.40267 -27.92043 -27.45492 -25.80221 -23.75514 -22.37878 -20.47057 -18.75703 -18.51189 -18.38629 -18.08371 -17.32458 -16.73439 -16.57498 -16.30306 -15.94440 -15.79042 -14.94922 -14.52967 -14.39244 -14.21738 -14.01661 -13.83712 -13.68681 -13.54276 -13.44116 -13.08900 -12.83854 -12.82329 -12.57908 -12.24310 -12.23784 -11.78456 -11.21364 -10.81969 -10.67591 -9.85004 -9.53394 -8.40827 -8.26152 -6.41536 -0.09677 0.31624 1.33646 1.38995 1.46134 1.71166 2.21734 2.38562 2.64567 2.95555 3.03185 3.39268 3.48997 3.73767 4.11711 4.21165 4.34954 4.41803 4.59952 4.68165 4.78606 4.86691 4.88391 4.94846 5.08606 5.12785 5.16849 5.19690 5.35087 5.49224 5.74134 5.77454 6.00767 6.54010 6.58474 6.66734 7.06573 7.18354 7.33742 8.81059 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024826 B = 0.005524 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.600090 B = 5067.929364 C = 5695.872463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.146 4.146 4 C 0.222 3.778 5 N -0.855 5.855 6 C -0.152 4.152 7 C -0.119 4.119 8 C 0.538 3.462 9 O -0.591 6.591 10 N -0.597 5.597 11 C 0.076 3.924 12 C 0.258 3.742 13 C -0.550 4.550 14 H 0.048 0.952 15 C 0.011 3.989 16 N -0.925 5.925 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.281 1.281 21 C 0.036 3.964 22 F -0.158 7.158 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.175 0.825 27 H 0.410 0.590 28 H 0.415 0.585 29 H 0.148 0.852 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.034 0.966 34 H -0.001 1.001 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 24.142 -0.172 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.168 4.168 4 C 0.115 3.885 5 N -0.396 5.396 6 C -0.175 4.175 7 C -0.124 4.124 8 C 0.327 3.673 9 O -0.473 6.473 10 N -0.327 5.327 11 C -0.066 4.066 12 C 0.137 3.863 13 C -0.588 4.588 14 H 0.066 0.934 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.792 3.208 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.207 1.207 21 C 0.014 3.986 22 F -0.137 7.137 23 H 0.103 0.897 24 H 0.074 0.926 25 H 0.125 0.875 26 H 0.193 0.807 27 H 0.240 0.760 28 H 0.246 0.754 29 H 0.166 0.834 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.018 0.982 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.241 23.486 0.218 24.578 hybrid contribution 0.040 -1.445 -0.322 1.481 sum -7.202 22.041 -0.105 23.188 Atomic orbital electron populations 1.20825 0.88084 1.04238 1.03800 1.19893 0.98181 0.90072 0.99182 1.20796 0.91811 0.98000 1.06220 1.17558 0.91484 0.86693 0.92797 1.42376 1.09740 1.03800 1.83640 1.20681 1.00602 0.88739 1.07486 1.19702 0.92578 0.93837 1.06236 1.18839 0.80348 0.87247 0.80904 1.90722 1.67871 1.46816 1.41902 1.48075 1.34100 1.14653 1.35900 1.22135 1.01278 0.89085 0.94099 1.18845 0.92219 0.79484 0.95723 1.21636 1.13783 0.99634 1.23791 0.93383 1.25845 0.95763 0.98883 0.98348 1.70031 1.25158 1.18283 1.42979 0.85470 0.78149 0.77915 0.79302 1.18246 1.19714 1.20678 1.17773 0.88518 0.82037 1.10240 1.91426 1.80009 1.47809 1.94467 0.89655 0.92587 0.87518 0.80747 0.76014 0.75424 0.83390 0.90091 0.91327 0.89419 0.94835 0.98245 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.83 71.24 0.70 -1.38 16 2 C -0.07 -1.76 5.88 -19.87 -0.12 -1.87 16 3 C -0.15 -2.48 9.53 22.44 0.21 -2.27 16 4 C 0.22 3.94 6.75 38.13 0.26 4.19 16 5 N -0.85 -7.41 9.10 -51.41 -0.47 -7.87 16 6 C -0.15 -3.88 7.45 22.67 0.17 -3.71 16 7 C -0.12 -4.42 4.90 -20.07 -0.10 -4.52 16 8 C 0.54 26.46 7.00 86.75 0.61 27.06 16 9 O -0.59 -35.61 16.20 -3.95 -0.06 -35.67 16 10 N -0.60 -28.15 2.86 -854.73 -2.44 -30.59 16 11 C 0.08 2.50 9.09 127.77 1.16 3.66 16 12 C 0.26 14.85 5.21 85.63 0.45 15.29 16 13 C -0.55 -33.69 9.39 25.60 0.24 -33.45 16 14 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 15 C 0.01 0.66 5.46 84.65 0.46 1.12 16 16 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 17 Si 0.97 46.77 29.54 68.60 2.03 48.79 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 21 C 0.04 1.31 7.19 22.67 0.16 1.47 16 22 F -0.16 -6.97 15.70 44.97 0.71 -6.26 16 23 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.23 7.63 -2.39 -0.02 1.21 16 25 H 0.11 1.19 8.08 -2.38 -0.02 1.17 16 26 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 27 H 0.41 2.55 8.84 -92.70 -0.82 1.73 16 28 H 0.41 1.40 8.84 -92.71 -0.82 0.58 16 29 H 0.15 3.30 6.55 -2.91 -0.02 3.28 16 30 H 0.08 2.08 7.55 -2.39 -0.02 2.06 16 31 H 0.07 2.31 8.09 -2.39 -0.02 2.30 16 32 H 0.09 2.49 5.67 -2.39 -0.01 2.47 16 33 H 0.03 1.90 8.07 -2.39 -0.02 1.88 16 34 H 0.00 -0.04 7.36 -2.39 -0.02 -0.06 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -85.60 304.69 3.75 -81.85 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -0.50 Total: 1.45 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 4.21 Total: 5.61 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -2.62 Total: -95.76 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.06 Total: -35.67 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.71 Total: -6.26 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -85.60 3.75 -81.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234293903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.057 kcal (2) G-P(sol) polarization free energy of solvation -85.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds