Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38990 * 119.99846 * 2 1 4 4 C 1.39002 * 119.66162 * 359.97438 * 3 2 1 5 5 C 1.38509 * 119.26321 * 179.97438 * 4 3 2 6 6 N 1.48004 * 120.71159 * 180.02562 * 5 4 3 7 7 O 1.21791 * 120.00617 * 179.97438 * 6 5 4 8 8 O 1.21801 * 119.99311 * 359.97438 * 6 5 4 9 9 C 1.38557 * 118.58675 * 0.02562 * 5 4 3 10 10 C 1.38963 * 119.26218 * 0.02562 * 9 5 4 11 11 N 1.38991 * 119.65832 * 180.02562 * 10 9 5 12 12 C 1.46502 * 120.00019 * 184.99418 * 11 10 9 13 13 C 1.46499 * 120.00323 * 4.99502 * 11 10 9 14 14 C 1.50701 * 109.46992 * 270.00038 * 13 11 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 N 1.32473 * 119.65869 * 180.26832 * 3 2 1 23 23 H 1.09002 * 109.47334 * 300.00384 * 1 2 3 24 24 H 1.09003 * 109.46869 * 60.00225 * 1 2 3 25 25 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 26 26 H 0.96994 * 119.99890 * 179.97438 * 2 1 3 27 27 H 1.08004 * 120.36704 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.37037 * 179.97438 * 9 5 4 29 29 H 1.08996 * 109.47461 * 270.00094 * 12 11 10 30 30 H 1.08998 * 109.46888 * 29.99863 * 12 11 10 31 31 H 1.08994 * 109.47490 * 149.99926 * 12 11 10 32 32 H 1.09002 * 109.47391 * 150.00028 * 13 11 10 33 33 H 1.09001 * 109.46813 * 30.00084 * 13 11 10 34 34 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2037 0.0000 4 6 1.4578 2.4034 -0.0005 5 6 2.1586 3.5980 0.0000 6 7 1.4436 4.8939 0.0000 7 8 2.0727 5.9367 0.0010 8 8 0.2258 4.9173 -0.0009 9 6 3.5435 3.5543 0.0005 10 6 4.1842 2.3211 0.0000 11 7 5.5730 2.2676 0.0010 12 6 6.2564 0.9765 -0.1100 13 6 6.3536 3.5022 0.1132 14 6 6.6271 4.0504 -1.2637 15 1 6.2563 3.5314 -2.1351 16 6 7.3500 5.2153 -1.4108 17 7 7.8012 5.8476 -0.3497 18 14 7.6884 5.8951 -3.1175 19 1 7.0765 5.0040 -4.1357 20 1 7.1024 7.2547 -3.2338 21 1 9.1550 5.9675 -3.3396 22 7 3.4847 1.1959 -0.0054 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.9500 -0.8400 0.0004 27 1 0.3778 2.4039 -0.0014 28 1 4.1187 4.4684 0.0005 29 1 6.4217 0.5660 0.8860 30 1 5.6408 0.2882 -0.6891 31 1 7.2152 1.1147 -0.6096 32 1 7.2982 3.2907 0.6143 33 1 5.7919 4.2359 0.6914 34 1 8.3101 6.6669 -0.4532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234480430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = 52.523087 kcal Electronic energy + Delta-G solvation = -20121.309422 eV Core-core repulsion = 16865.228538 eV Total energy + Delta-G solvation = -3256.080884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 4.07 seconds Orbital eigenvalues (eV) -41.81505 -40.09954 -37.02738 -36.16335 -35.01136 -33.05872 -32.30194 -29.49977 -28.21098 -26.78111 -26.21350 -25.17676 -23.22878 -21.98423 -20.62284 -18.93216 -18.41459 -17.17630 -17.06261 -16.67952 -15.96705 -15.49456 -15.25397 -14.86831 -14.79535 -14.43957 -13.96255 -13.31029 -12.87673 -12.47178 -12.27304 -12.04398 -11.71666 -11.33704 -11.19834 -11.03584 -10.93176 -10.77601 -10.73864 -10.57245 -10.29656 -10.19819 -9.61210 -9.47084 -8.61651 -8.12388 -7.02107 -6.20767 -4.31136 0.24904 1.63284 1.71587 1.92126 2.99878 3.22239 3.31318 3.34177 3.65671 4.02652 4.31782 4.87937 5.01665 5.09614 5.14503 5.17545 5.27011 5.38196 5.51256 5.58985 5.85981 5.97685 6.06224 6.25797 6.38198 6.67723 6.76471 6.88431 7.06374 7.36321 7.58944 7.76258 7.95465 7.98203 8.03339 8.39393 8.76681 9.37276 10.84198 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.006503 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.573015 B = 4304.880408 C = 5382.610533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.727 5.727 3 C 0.453 3.547 4 C -0.274 4.274 5 C 0.079 3.921 6 N 0.027 4.973 7 O -0.143 6.143 8 O -0.169 6.169 9 C -0.210 4.210 10 C 0.467 3.533 11 N -0.573 5.573 12 C 0.102 3.898 13 C 0.245 3.755 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.068 3.932 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.282 1.282 22 N -0.582 5.582 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.407 0.593 27 H 0.146 0.854 28 H 0.171 0.829 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 -11.106 1.583 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.361 5.361 3 C 0.215 3.785 4 C -0.303 4.303 5 C -0.011 4.011 6 N 0.548 4.452 7 O -0.363 6.363 8 O -0.383 6.383 9 C -0.238 4.238 10 C 0.224 3.776 11 N -0.280 5.280 12 C -0.042 4.042 13 C 0.125 3.875 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.208 1.208 22 N -0.312 5.312 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.242 0.758 27 H 0.164 0.836 28 H 0.188 0.812 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.461 -12.302 1.643 15.606 hybrid contribution -0.174 1.231 -0.934 1.554 sum -9.635 -11.072 0.710 14.694 Atomic orbital electron populations 1.21614 0.78801 1.02706 1.01763 1.44102 1.05700 1.04858 1.81428 1.17459 0.86712 0.85580 0.88773 1.20478 1.01460 0.89261 1.19132 1.20672 0.92005 0.82606 1.05784 1.43632 1.00957 1.03119 0.97451 1.94593 1.68378 1.21150 1.52174 1.94463 0.96000 1.94225 1.53611 1.21279 0.91526 1.01162 1.09843 1.17645 0.86039 0.86260 0.87612 1.47251 1.00017 1.09574 1.71114 1.21508 0.97527 0.84654 1.00466 1.19592 0.90739 0.79222 0.97904 1.21479 1.35460 1.08871 0.92360 0.91986 1.24932 0.95071 0.96258 0.97344 1.69916 1.36007 1.17880 1.28759 0.86422 0.77969 0.79198 0.83810 1.19758 1.20497 1.20797 1.66584 1.06132 1.30291 1.28161 0.92452 0.92436 0.90335 0.75753 0.83636 0.81162 0.93887 0.91532 0.91011 0.93791 0.94140 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 9.92 59.85 0.59 1.33 16 2 N -0.73 -8.04 5.89 -67.22 -0.40 -8.43 16 3 C 0.45 6.97 7.65 -155.02 -1.19 5.79 16 4 C -0.27 -4.40 8.84 -39.20 -0.35 -4.75 16 5 C 0.08 1.48 6.89 -79.74 -0.55 0.93 16 6 N 0.03 0.53 4.45 34.07 0.15 0.68 16 7 O -0.14 -2.99 18.54 -29.46 -0.55 -3.53 16 8 O -0.17 -3.12 18.54 -29.46 -0.55 -3.67 16 9 C -0.21 -4.30 8.70 -39.20 -0.34 -4.64 16 10 C 0.47 9.24 7.36 -155.01 -1.14 8.10 16 11 N -0.57 -11.64 2.97 -183.14 -0.54 -12.19 16 12 C 0.10 1.71 10.42 59.85 0.62 2.33 16 13 C 0.24 5.76 4.79 -5.19 -0.02 5.74 16 14 C -0.54 -14.13 9.33 -34.44 -0.32 -14.45 16 15 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -24.58 13.29 55.43 0.74 -23.85 16 18 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 N -0.58 -10.22 9.19 -11.62 -0.11 -10.32 16 23 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 24 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.41 3.92 8.95 -40.82 -0.37 3.56 16 27 H 0.15 2.02 6.32 -52.48 -0.33 1.69 16 28 H 0.17 3.84 5.84 -52.49 -0.31 3.54 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.05 7.45 -51.93 -0.39 0.67 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 33 H 0.04 1.01 6.38 -51.93 -0.33 0.68 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -28.90 302.41 -8.28 -37.17 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -3.77 Total: 1.65 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.79 Total: 2.09 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.16 Total: -54.11 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -1.09 Total: -7.20 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.90 -8.28 -37.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234480430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.696 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds