Wall clock time and date at job start Mon Mar 30 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38990 * 119.99846 * 2 1 4 4 C 1.39002 * 119.66162 * 359.97438 * 3 2 1 5 5 C 1.38509 * 119.26321 * 179.97438 * 4 3 2 6 6 N 1.48004 * 120.71159 * 180.02562 * 5 4 3 7 7 O 1.21791 * 120.00617 * 179.97438 * 6 5 4 8 8 O 1.21801 * 119.99311 * 359.97438 * 6 5 4 9 9 C 1.38557 * 118.58675 * 0.02562 * 5 4 3 10 10 C 1.38963 * 119.26218 * 0.02562 * 9 5 4 11 11 N 1.38991 * 119.65832 * 180.02562 * 10 9 5 12 12 C 1.46502 * 120.00019 * 184.99418 * 11 10 9 13 13 C 1.46499 * 120.00323 * 4.99502 * 11 10 9 14 14 C 1.50701 * 109.46992 * 270.00038 * 13 11 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 N 1.32473 * 119.65869 * 180.26832 * 3 2 1 23 23 H 1.09002 * 109.47334 * 300.00384 * 1 2 3 24 24 H 1.09003 * 109.46869 * 60.00225 * 1 2 3 25 25 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 26 26 H 0.96994 * 119.99890 * 179.97438 * 2 1 3 27 27 H 1.08004 * 120.36704 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.37037 * 179.97438 * 9 5 4 29 29 H 1.08996 * 109.47461 * 270.00094 * 12 11 10 30 30 H 1.08998 * 109.46888 * 29.99863 * 12 11 10 31 31 H 1.08994 * 109.47490 * 149.99926 * 12 11 10 32 32 H 1.09002 * 109.47391 * 150.00028 * 13 11 10 33 33 H 1.09001 * 109.46813 * 30.00084 * 13 11 10 34 34 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2037 0.0000 4 6 1.4578 2.4034 -0.0005 5 6 2.1586 3.5980 0.0000 6 7 1.4436 4.8939 0.0000 7 8 2.0727 5.9367 0.0010 8 8 0.2258 4.9173 -0.0009 9 6 3.5435 3.5543 0.0005 10 6 4.1842 2.3211 0.0000 11 7 5.5730 2.2676 0.0010 12 6 6.2564 0.9765 -0.1100 13 6 6.3536 3.5022 0.1132 14 6 6.6271 4.0504 -1.2637 15 1 6.2563 3.5314 -2.1351 16 6 7.3500 5.2153 -1.4108 17 7 7.8012 5.8476 -0.3497 18 14 7.6884 5.8951 -3.1175 19 1 7.0765 5.0040 -4.1357 20 1 7.1024 7.2547 -3.2338 21 1 9.1550 5.9675 -3.3396 22 7 3.4847 1.1959 -0.0054 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.9500 -0.8400 0.0004 27 1 0.3778 2.4039 -0.0014 28 1 4.1187 4.4684 0.0005 29 1 6.4217 0.5660 0.8860 30 1 5.6408 0.2882 -0.6891 31 1 7.2152 1.1147 -0.6096 32 1 7.2982 3.2907 0.6143 33 1 5.7919 4.2359 0.6914 34 1 8.3101 6.6669 -0.4532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234480430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:13 Heat of formation + Delta-G solvation = 35.805014 kcal Electronic energy + Delta-G solvation = -20122.034372 eV Core-core repulsion = 16865.228538 eV Total energy + Delta-G solvation = -3256.805834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -43.35400 -41.49319 -38.40212 -37.71559 -36.27474 -34.88687 -33.84831 -30.80794 -29.96331 -28.24438 -27.22342 -26.71595 -24.96509 -23.38648 -22.09388 -20.37034 -19.91457 -18.76108 -18.67033 -18.36557 -17.44142 -16.94170 -16.69176 -16.31593 -16.11109 -15.72795 -15.17498 -14.86549 -14.24675 -13.87733 -13.64320 -13.34186 -13.13635 -12.92905 -12.78895 -12.75665 -12.54646 -12.46156 -12.34707 -12.13643 -11.95683 -11.76135 -11.34177 -10.88905 -10.65961 -9.33670 -8.54554 -8.17728 -6.41365 -1.25667 0.22056 0.25332 0.43597 1.36283 1.39916 1.49407 1.79482 2.29302 2.40145 2.62756 3.04790 3.61148 3.67256 3.85642 3.94706 4.21033 4.45642 4.48367 4.67234 4.70104 4.71389 4.81925 4.91912 4.98867 5.00395 5.11348 5.23057 5.56702 5.73634 5.95988 6.05171 6.38141 6.48624 6.54955 6.70485 7.05837 7.30879 8.79939 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.006503 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.573015 B = 4304.880408 C = 5382.610533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.707 5.707 3 C 0.456 3.544 4 C -0.252 4.252 5 C 0.074 3.926 6 N 0.027 4.973 7 O -0.210 6.210 8 O -0.115 6.115 9 C -0.250 4.250 10 C 0.459 3.541 11 N -0.587 5.587 12 C 0.104 3.896 13 C 0.262 3.738 14 C -0.547 4.547 15 H 0.052 0.948 16 C 0.021 3.979 17 N -0.919 5.919 18 Si 0.958 3.042 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.271 1.271 22 N -0.579 5.579 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.114 0.886 26 H 0.417 0.583 27 H 0.177 0.823 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.017 0.983 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 -13.632 0.944 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.340 5.340 3 C 0.214 3.786 4 C -0.281 4.281 5 C -0.015 4.015 6 N 0.547 4.453 7 O -0.413 6.413 8 O -0.345 6.345 9 C -0.279 4.279 10 C 0.218 3.782 11 N -0.294 5.294 12 C -0.038 4.038 13 C 0.141 3.859 14 C -0.586 4.586 15 H 0.070 0.930 16 C -0.180 4.180 17 N -0.558 5.558 18 Si 0.783 3.217 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.196 1.196 22 N -0.309 5.309 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.132 0.868 26 H 0.254 0.746 27 H 0.194 0.806 28 H 0.153 0.847 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.718 -14.805 1.004 18.908 hybrid contribution 0.187 1.775 -0.699 1.916 sum -11.531 -13.031 0.305 17.403 Atomic orbital electron populations 1.21989 0.76192 1.05424 1.02280 1.44372 1.07201 1.03577 1.78852 1.17807 0.86174 0.87090 0.87531 1.20855 1.02814 0.88155 1.16240 1.20801 0.91663 0.82860 1.06184 1.43773 1.01001 1.03359 0.97183 1.94629 1.68695 1.21785 1.56161 1.94401 0.95871 1.94200 1.50071 1.20954 0.92355 1.00275 1.14277 1.17612 0.85880 0.86643 0.88019 1.47065 1.00457 1.09449 1.72462 1.21616 0.97258 0.83254 1.01664 1.19088 0.90159 0.80346 0.96266 1.21674 1.34896 1.08965 0.93068 0.92961 1.25683 0.95058 0.96619 1.00651 1.70008 1.36907 1.18376 1.30550 0.85504 0.78229 0.78191 0.79755 1.19583 1.20638 1.19613 1.66653 1.07113 1.28891 1.28274 0.91748 0.91904 0.86791 0.74558 0.80572 0.84732 0.92190 0.90351 0.91365 0.94974 0.96490 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.92 127.77 1.27 2.11 16 2 N -0.71 -12.43 5.89 -366.60 -2.16 -14.59 16 3 C 0.46 12.62 7.65 133.01 1.02 13.64 16 4 C -0.25 -7.36 8.84 22.52 0.20 -7.16 16 5 C 0.07 2.77 6.89 36.52 0.25 3.03 16 6 N 0.03 1.04 4.45 -46.14 -0.21 0.83 16 7 O -0.21 -9.27 18.54 18.90 0.35 -8.92 16 8 O -0.12 -3.98 18.54 18.88 0.35 -3.63 16 9 C -0.25 -10.69 8.70 22.52 0.20 -10.49 16 10 C 0.46 18.44 7.36 133.00 0.98 19.42 16 11 N -0.59 -24.50 2.97 -733.32 -2.18 -26.68 16 12 C 0.10 3.46 10.42 127.77 1.33 4.79 16 13 C 0.26 13.06 4.79 85.63 0.41 13.47 16 14 C -0.55 -29.63 9.33 25.60 0.24 -29.39 16 15 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 16 C 0.02 1.12 5.46 84.66 0.46 1.59 16 17 N -0.92 -52.78 13.29 21.45 0.28 -52.50 16 18 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 N -0.58 -19.40 9.19 -190.69 -1.75 -21.15 16 23 H 0.06 0.63 7.92 -2.39 -0.02 0.61 16 24 H 0.06 0.64 7.92 -2.39 -0.02 0.62 16 25 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.42 6.13 8.95 -92.71 -0.83 5.30 16 27 H 0.18 4.02 6.32 -2.91 -0.02 4.00 16 28 H 0.13 6.69 5.84 -2.91 -0.02 6.67 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 2.38 7.45 -2.39 -0.02 2.36 16 31 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 32 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 33 H 0.02 0.93 6.38 -2.39 -0.02 0.91 16 34 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -64.78 302.41 3.38 -61.40 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.31 Total: 8.50 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 6.35 Total: 10.99 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -6.01 Total: -114.09 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.70 Total: -12.55 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -64.78 3.38 -61.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234480430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.203 kcal (2) G-P(sol) polarization free energy of solvation -64.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds